CV885392

Overview
NameCV885392
Unique NameCV885392
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2639 contig Csv1_Contig2639:372..1049. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV885392 vs. ExPASy Swiss-Prot
Match: RS62_ARATH (40S ribosomal protein S6-2 OS=Arabidopsis thaliana GN=RPS6B PE=1 SV=3)

HSP 1 Score: 207.994 bits (528), Expect = 3.704e-53
Identity = 112/137 (81.75%), Postives = 115/137 (83.94%), Query Frame = -2
Query:  262 IVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXKLLATRLKEQRERRSESLAKKRSRL 672
            IVSPDLSVLNLVIVKKG  DLPGLTDTEKPRMRGPKRASKIRKLFNL KEDDVRKYVNTYRRTFT K GKKVSKAPKIQRLVTPLTLQRKRARI+                 KLLA+RLKEQR+RRSESLAKKRSRL
Sbjct:  103 IVSPDLSVLNLVIVKKGVSDLPGLTDTEKPRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTFTNKKGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKANSDAADYQKLLASRLKEQRDRRSESLAKKRSRL 239          
BLAST of CV885392 vs. ExPASy Swiss-Prot
Match: RS6_ASPOF (40S ribosomal protein S6 OS=Asparagus officinalis GN=rps6 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 8.251e-53
Identity = 111/137 (81.02%), Postives = 115/137 (83.94%), Query Frame = -2
Query:  262 IVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXKLLATRLKEQRERRSESLAKKRSRL 672
            IVSPDLSVLNLVIVKKGE+DLPGLTD EKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFT K GK  SKAPKIQRLVTPLTLQRKRARI+                 KLLA+RLKEQR+RRSESLAKKRSRL
Sbjct:  103 IVSPDLSVLNLVIVKKGENDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTNKKGKTCSKAPKIQRLVTPLTLQRKRARIAEKKKRVAKAKSEAAEYQKLLASRLKEQRDRRSESLAKKRSRL 239          
BLAST of CV885392 vs. ExPASy Swiss-Prot
Match: RS61_ARATH (40S ribosomal protein S6-1 OS=Arabidopsis thaliana GN=RPS6A PE=1 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 2.401e-52
Identity = 110/137 (80.29%), Postives = 115/137 (83.94%), Query Frame = -2
Query:  262 IVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXKLLATRLKEQRERRSESLAKKRSRL 672
            IVSPDLSVLNLVIVKKGE+DLPGLTDTEKPRMRGPKRASKIRKLFNL KEDDVR YVNTYRR FT K GK+VSKAPKIQRLVTPLTLQRKRARI+                 KLLA+RLKEQR+RRSESLAKKRSRL
Sbjct:  103 IVSPDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLKKEDDVRTYVNTYRRKFTNKKGKEVSKAPKIQRLVTPLTLQRKRARIADKKKKIAKANSDAADYQKLLASRLKEQRDRRSESLAKKRSRL 239          
BLAST of CV885392 vs. ExPASy Swiss-Prot
Match: RS6_TOBAC (40S ribosomal protein S6 (Fragment) OS=Nicotiana tabacum GN=RPS6 PE=2 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 5.192e-39
Identity = 96/137 (70.07%), Postives = 103/137 (75.18%), Query Frame = -2
Query:  262 IVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXKLLATRLKEQRERRSESLAKKRSRL 672
            IVSPDLSVLNLVIVKKGE+DLPGLTDTEKPRMRGP+   +   L+   KEDDVRKYVNT    FTTK   K SKAPKIQRLVTPLTLQRKRARI+                 KLLA+RLKEQRE+RSESLAKKRSRL
Sbjct:   58 IVSPDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPREPQRSEALY--FKEDDVRKYVNT-TAEFTTK--WKGSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQREKRSESLAKKRSRL 189          
BLAST of CV885392 vs. ExPASy Swiss-Prot
Match: RS6_ICTPU (40S ribosomal protein S6 OS=Ictalurus punctatus GN=rps6 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.760e-32
Identity = 78/134 (58.21%), Postives = 92/134 (68.66%), Query Frame = -2
Query:  271 IVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXKLLATRLKEQRERRSESLAKKR 672
            IV  +LSVLNLVI++KGE D+PGLTD+  PR  GPKRAS+IRKLFNLSKEDDVR+YV   RR  T +  K  +KAPKIQRLVTP  LQ KR RI+                 KLLA RLKE +E+R E +AK+R
Sbjct:  101 IVDANLSVLNLVIIRKGEKDIPGLTDSTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRRPLTKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKRQRTQKNKDEAAEYAKLLAKRLKEAKEKRQEKIAKRR 232          
BLAST of CV885392 vs. ExPASy Swiss-Prot
Match: RS6_RAT (40S ribosomal protein S6 OS=Rattus norvegicus GN=Rps6 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.707e-32
Identity = 78/134 (58.21%), Postives = 91/134 (67.91%), Query Frame = -2
Query:  271 IVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXKLLATRLKEQRERRSESLAKKR 672
            IV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  LQ KR RI+                 KLLA R+KE +E+R E +AK+R
Sbjct:  101 IVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRR 232          
BLAST of CV885392 vs. ExPASy Swiss-Prot
Match: RS6_MOUSE (40S ribosomal protein S6 OS=Mus musculus GN=Rps6 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.707e-32
Identity = 78/134 (58.21%), Postives = 91/134 (67.91%), Query Frame = -2
Query:  271 IVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXKLLATRLKEQRERRSESLAKKR 672
            IV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  LQ KR RI+                 KLLA R+KE +E+R E +AK+R
Sbjct:  101 IVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRR 232          
BLAST of CV885392 vs. ExPASy Swiss-Prot
Match: RS6_MACFA (40S ribosomal protein S6 OS=Macaca fascicularis GN=RPS6 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.707e-32
Identity = 78/134 (58.21%), Postives = 91/134 (67.91%), Query Frame = -2
Query:  271 IVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXKLLATRLKEQRERRSESLAKKR 672
            IV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  LQ KR RI+                 KLLA R+KE +E+R E +AK+R
Sbjct:  101 IVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRR 232          
BLAST of CV885392 vs. ExPASy Swiss-Prot
Match: RS6_HUMAN (40S ribosomal protein S6 OS=Homo sapiens GN=RPS6 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.707e-32
Identity = 78/134 (58.21%), Postives = 91/134 (67.91%), Query Frame = -2
Query:  271 IVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXKLLATRLKEQRERRSESLAKKR 672
            IV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  LQ KR RI+                 KLLA R+KE +E+R E +AK+R
Sbjct:  101 IVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRR 232          
BLAST of CV885392 vs. ExPASy Swiss-Prot
Match: RS6_CHICK (40S ribosomal protein S6 OS=Gallus gallus GN=RPS6 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.707e-32
Identity = 78/134 (58.21%), Postives = 91/134 (67.91%), Query Frame = -2
Query:  271 IVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXKLLATRLKEQRERRSESLAKKR 672
            IV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  LQ KR RI+                 KLLA R+KE +E+R E +AK+R
Sbjct:  101 IVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTQKNKEEAADYAKLLAKRMKEAKEKRQEQIAKRR 232          
The following BLAST results are available for this feature:
BLAST of CV885392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
RS62_ARATH3.704e-5381.7540S ribosomal protein S6-2 OS=Arabidopsis thaliana... [more]
RS6_ASPOF8.251e-5381.0240S ribosomal protein S6 OS=Asparagus officinalis ... [more]
RS61_ARATH2.401e-5280.2940S ribosomal protein S6-1 OS=Arabidopsis thaliana... [more]
RS6_TOBAC5.192e-3970.0740S ribosomal protein S6 (Fragment) OS=Nicotiana t... [more]
RS6_ICTPU2.760e-3258.2140S ribosomal protein S6 OS=Ictalurus punctatus GN... [more]
RS6_RAT4.707e-3258.2140S ribosomal protein S6 OS=Rattus norvegicus GN=R... [more]
RS6_MOUSE4.707e-3258.2140S ribosomal protein S6 OS=Mus musculus GN=Rps6 P... [more]
RS6_MACFA4.707e-3258.2140S ribosomal protein S6 OS=Macaca fascicularis GN... [more]
RS6_HUMAN4.707e-3258.2140S ribosomal protein S6 OS=Homo sapiens GN=RPS6 P... [more]
RS6_CHICK4.707e-3258.2140S ribosomal protein S6 OS=Gallus gallus GN=RPS6 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_015D09_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_015_T3_D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885392 ID=CV885392; Name=CV885392; organism=Citrus sinensis; type=EST; length=673bp
ATCAATAATTGATAAAGGTAACCACATTATGACATTTAACACCAAACTAA
AGAAAATAGCTGAGCATCAACCAATTTAAGTAAACAAAATCGGAAAAGTG
TCTATGAAGGTTATTGTATCACATTCCATGGGATATTAAGTCAAAAACAC
TCGAAATTTCCTCAACCTATTAGAAAGTATTCAGCAGGACAATACATAAC
CGACCAAAGAACAACTATAGCAAAGAATCTAAGCTGCAATAGATGGCTTT
GAGGCAGCAGAGAGCCTAGACCTCTTCTTTGCCAAACTCTCACTGCGGCG
TTCACGCTGCTCCTTCAACCTGGTAGCAAGGAGCTTCTGGTATTCCGCTG
CTTCAGCCTTGGCCTTGGCAATTCTCTGCTTCTTTTCTGAAATTCTTGCA
CGCTTCCTTTGCAGAGTCAAAGGAGTTACCAACCTCTGAATTTTCGGTGC
CTTGCTAACCTTCTTACCAGATTTTGTTGTGAAGGTCCGACGATAGGTGT
TAACGTACTTCCTAACATCATCCTCCTTGGAAAGGTTGAACAACTTCCTG
ATCTTCGATGCTCTCTTGGGACCTCTCATTCTGGGCTTTTCTGTATCGGT
AAGTCCAGGAAGGTCATGTTCTCCCTTTTTCACAATGACCAAATTCAACA
CGGAGAGATCTGGACTAACTATG
back to top