CV885392
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CV885392 vs. ExPASy Swiss-Prot
Match: RS62_ARATH (40S ribosomal protein S6-2 OS=Arabidopsis thaliana GN=RPS6B PE=1 SV=3) HSP 1 Score: 207.994 bits (528), Expect = 3.704e-53 Identity = 112/137 (81.75%), Postives = 115/137 (83.94%), Query Frame = -2 Query: 262 IVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXKLLATRLKEQRERRSESLAKKRSRL 672 IVSPDLSVLNLVIVKKG DLPGLTDTEKPRMRGPKRASKIRKLFNL KEDDVRKYVNTYRRTFT K GKKVSKAPKIQRLVTPLTLQRKRARI+ KLLA+RLKEQR+RRSESLAKKRSRL Sbjct: 103 IVSPDLSVLNLVIVKKGVSDLPGLTDTEKPRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTFTNKKGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKANSDAADYQKLLASRLKEQRDRRSESLAKKRSRL 239
BLAST of CV885392 vs. ExPASy Swiss-Prot
Match: RS6_ASPOF (40S ribosomal protein S6 OS=Asparagus officinalis GN=rps6 PE=2 SV=1) HSP 1 Score: 206.838 bits (525), Expect = 8.251e-53 Identity = 111/137 (81.02%), Postives = 115/137 (83.94%), Query Frame = -2 Query: 262 IVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXKLLATRLKEQRERRSESLAKKRSRL 672 IVSPDLSVLNLVIVKKGE+DLPGLTD EKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFT K GK SKAPKIQRLVTPLTLQRKRARI+ KLLA+RLKEQR+RRSESLAKKRSRL Sbjct: 103 IVSPDLSVLNLVIVKKGENDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTNKKGKTCSKAPKIQRLVTPLTLQRKRARIAEKKKRVAKAKSEAAEYQKLLASRLKEQRDRRSESLAKKRSRL 239
BLAST of CV885392 vs. ExPASy Swiss-Prot
Match: RS61_ARATH (40S ribosomal protein S6-1 OS=Arabidopsis thaliana GN=RPS6A PE=1 SV=2) HSP 1 Score: 205.297 bits (521), Expect = 2.401e-52 Identity = 110/137 (80.29%), Postives = 115/137 (83.94%), Query Frame = -2 Query: 262 IVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXKLLATRLKEQRERRSESLAKKRSRL 672 IVSPDLSVLNLVIVKKGE+DLPGLTDTEKPRMRGPKRASKIRKLFNL KEDDVR YVNTYRR FT K GK+VSKAPKIQRLVTPLTLQRKRARI+ KLLA+RLKEQR+RRSESLAKKRSRL Sbjct: 103 IVSPDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLKKEDDVRTYVNTYRRKFTNKKGKEVSKAPKIQRLVTPLTLQRKRARIADKKKKIAKANSDAADYQKLLASRLKEQRDRRSESLAKKRSRL 239
BLAST of CV885392 vs. ExPASy Swiss-Prot
Match: RS6_TOBAC (40S ribosomal protein S6 (Fragment) OS=Nicotiana tabacum GN=RPS6 PE=2 SV=2) HSP 1 Score: 160.999 bits (406), Expect = 5.192e-39 Identity = 96/137 (70.07%), Postives = 103/137 (75.18%), Query Frame = -2 Query: 262 IVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXKLLATRLKEQRERRSESLAKKRSRL 672 IVSPDLSVLNLVIVKKGE+DLPGLTDTEKPRMRGP+ + L+ KEDDVRKYVNT FTTK K SKAPKIQRLVTPLTLQRKRARI+ KLLA+RLKEQRE+RSESLAKKRSRL Sbjct: 58 IVSPDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPREPQRSEALY--FKEDDVRKYVNT-TAEFTTK--WKGSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQREKRSESLAKKRSRL 189
BLAST of CV885392 vs. ExPASy Swiss-Prot
Match: RS6_ICTPU (40S ribosomal protein S6 OS=Ictalurus punctatus GN=rps6 PE=2 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 2.760e-32 Identity = 78/134 (58.21%), Postives = 92/134 (68.66%), Query Frame = -2 Query: 271 IVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXKLLATRLKEQRERRSESLAKKR 672 IV +LSVLNLVI++KGE D+PGLTD+ PR GPKRAS+IRKLFNLSKEDDVR+YV RR T + K +KAPKIQRLVTP LQ KR RI+ KLLA RLKE +E+R E +AK+R Sbjct: 101 IVDANLSVLNLVIIRKGEKDIPGLTDSTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRRPLTKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKRQRTQKNKDEAAEYAKLLAKRLKEAKEKRQEKIAKRR 232
BLAST of CV885392 vs. ExPASy Swiss-Prot
Match: RS6_RAT (40S ribosomal protein S6 OS=Rattus norvegicus GN=Rps6 PE=1 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 4.707e-32 Identity = 78/134 (58.21%), Postives = 91/134 (67.91%), Query Frame = -2 Query: 271 IVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXKLLATRLKEQRERRSESLAKKR 672 IV +LSVLNLVIVKKGE D+PGLTDT PR GPKRAS+IRKLFNLSKEDDVR+YV R+ + K +KAPKIQRLVTP LQ KR RI+ KLLA R+KE +E+R E +AK+R Sbjct: 101 IVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRR 232
BLAST of CV885392 vs. ExPASy Swiss-Prot
Match: RS6_MOUSE (40S ribosomal protein S6 OS=Mus musculus GN=Rps6 PE=1 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 4.707e-32 Identity = 78/134 (58.21%), Postives = 91/134 (67.91%), Query Frame = -2 Query: 271 IVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXKLLATRLKEQRERRSESLAKKR 672 IV +LSVLNLVIVKKGE D+PGLTDT PR GPKRAS+IRKLFNLSKEDDVR+YV R+ + K +KAPKIQRLVTP LQ KR RI+ KLLA R+KE +E+R E +AK+R Sbjct: 101 IVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRR 232
BLAST of CV885392 vs. ExPASy Swiss-Prot
Match: RS6_MACFA (40S ribosomal protein S6 OS=Macaca fascicularis GN=RPS6 PE=2 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 4.707e-32 Identity = 78/134 (58.21%), Postives = 91/134 (67.91%), Query Frame = -2 Query: 271 IVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXKLLATRLKEQRERRSESLAKKR 672 IV +LSVLNLVIVKKGE D+PGLTDT PR GPKRAS+IRKLFNLSKEDDVR+YV R+ + K +KAPKIQRLVTP LQ KR RI+ KLLA R+KE +E+R E +AK+R Sbjct: 101 IVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRR 232
BLAST of CV885392 vs. ExPASy Swiss-Prot
Match: RS6_HUMAN (40S ribosomal protein S6 OS=Homo sapiens GN=RPS6 PE=1 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 4.707e-32 Identity = 78/134 (58.21%), Postives = 91/134 (67.91%), Query Frame = -2 Query: 271 IVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXKLLATRLKEQRERRSESLAKKR 672 IV +LSVLNLVIVKKGE D+PGLTDT PR GPKRAS+IRKLFNLSKEDDVR+YV R+ + K +KAPKIQRLVTP LQ KR RI+ KLLA R+KE +E+R E +AK+R Sbjct: 101 IVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRR 232
BLAST of CV885392 vs. ExPASy Swiss-Prot
Match: RS6_CHICK (40S ribosomal protein S6 OS=Gallus gallus GN=RPS6 PE=2 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 4.707e-32 Identity = 78/134 (58.21%), Postives = 91/134 (67.91%), Query Frame = -2 Query: 271 IVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXKLLATRLKEQRERRSESLAKKR 672 IV +LSVLNLVIVKKGE D+PGLTDT PR GPKRAS+IRKLFNLSKEDDVR+YV R+ + K +KAPKIQRLVTP LQ KR RI+ KLLA R+KE +E+R E +AK+R Sbjct: 101 IVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTQKNKEEAADYAKLLAKRMKEAKEKRQEQIAKRR 232 The following BLAST results are available for this feature:
BLAST of CV885392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 34
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CV885392 ID=CV885392; Name=CV885392; organism=Citrus sinensis; type=EST; length=673bpback to top |