CV885385

Overview
NameCV885385
Unique NameCV885385
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length943
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2639 contig Csv1_Contig2639:15..962. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV885385 vs. ExPASy Swiss-Prot
Match: RS62_ARATH (40S ribosomal protein S6-2 OS=Arabidopsis thaliana GN=RPS6B PE=1 SV=3)

HSP 1 Score: 375.941 bits (964), Expect = 1.792e-103
Identity = 193/239 (80.75%), Postives = 199/239 (83.26%), Query Frame = 2
Query:   53 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXXLLATRLKEQRERRSESLAKKRSRL 769
            MKFN+ANPTTGCQKKLEIDDDQKLRAFFDKR+SQEV+GDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCF                 CIVSPDLSVLNLVIVKKG  DLPGLTDTEKPRMRGPKRASKIRKLFNL KEDDVRKYVNTYRRTFT K GKKVSKAPKIQRLVTPLTLQRKRARI+                  LLA+RLKEQR+RRSESLAKKRSRL
Sbjct:    1 MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGVSDLPGLTDTEKPRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTFTNKKGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKANSDAADYQKLLASRLKEQRDRRSESLAKKRSRL 239          
BLAST of CV885385 vs. ExPASy Swiss-Prot
Match: RS6_ASPOF (40S ribosomal protein S6 OS=Asparagus officinalis GN=rps6 PE=2 SV=1)

HSP 1 Score: 374.785 bits (961), Expect = 3.992e-103
Identity = 193/239 (80.75%), Postives = 199/239 (83.26%), Query Frame = 2
Query:   53 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXXLLATRLKEQRERRSESLAKKRSRL 769
            MKFNIANPTTGCQKKLEIDDDQKLRAF+DKRISQEV+GDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCF                 CIVSPDLSVLNLVIVKKGE+DLPGLTD EKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFT K GK  SKAPKIQRLVTPLTLQRKRARI+                  LLA+RLKEQR+RRSESLAKKRSRL
Sbjct:    1 MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTNKKGKTCSKAPKIQRLVTPLTLQRKRARIAEKKKRVAKAKSEAAEYQKLLASRLKEQRDRRSESLAKKRSRL 239          
BLAST of CV885385 vs. ExPASy Swiss-Prot
Match: RS61_ARATH (40S ribosomal protein S6-1 OS=Arabidopsis thaliana GN=RPS6A PE=1 SV=2)

HSP 1 Score: 370.548 bits (950), Expect = 7.529e-102
Identity = 190/239 (79.50%), Postives = 198/239 (82.85%), Query Frame = 2
Query:   53 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXXLLATRLKEQRERRSESLAKKRSRL 769
            MKFN+ANPTTGCQKKLEIDDDQKLRAF+DKRISQEV+GDALGEEFKGYVFKI GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCF                 CIVSPDLSVLNLVIVKKGE+DLPGLTDTEKPRMRGPKRASKIRKLFNL KEDDVR YVNTYRR FT K GK+VSKAPKIQRLVTPLTLQRKRARI+                  LLA+RLKEQR+RRSESLAKKRSRL
Sbjct:    1 MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLKKEDDVRTYVNTYRRKFTNKKGKEVSKAPKIQRLVTPLTLQRKRARIADKKKKIAKANSDAADYQKLLASRLKEQRDRRSESLAKKRSRL 239          
BLAST of CV885385 vs. ExPASy Swiss-Prot
Match: RS6_RAT (40S ribosomal protein S6 OS=Rattus norvegicus GN=Rps6 PE=1 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 1.256e-64
Identity = 134/236 (56.78%), Postives = 160/236 (67.80%), Query Frame = 2
Query:   53 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXXLLATRLKEQRERRSESLAKKR 760
            MK NI+ P TGCQK +E+DD++KLR F++KR++ EV  DALGEE+KGYV +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  LQ KR RI+                  LLA R+KE +E+R E +AK+R
Sbjct:    1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCY--RPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRR 232          
BLAST of CV885385 vs. ExPASy Swiss-Prot
Match: RS6_MOUSE (40S ribosomal protein S6 OS=Mus musculus GN=Rps6 PE=1 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 1.256e-64
Identity = 134/236 (56.78%), Postives = 160/236 (67.80%), Query Frame = 2
Query:   53 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXXLLATRLKEQRERRSESLAKKR 760
            MK NI+ P TGCQK +E+DD++KLR F++KR++ EV  DALGEE+KGYV +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  LQ KR RI+                  LLA R+KE +E+R E +AK+R
Sbjct:    1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCY--RPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRR 232          
BLAST of CV885385 vs. ExPASy Swiss-Prot
Match: RS6_MACFA (40S ribosomal protein S6 OS=Macaca fascicularis GN=RPS6 PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 1.256e-64
Identity = 134/236 (56.78%), Postives = 160/236 (67.80%), Query Frame = 2
Query:   53 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXXLLATRLKEQRERRSESLAKKR 760
            MK NI+ P TGCQK +E+DD++KLR F++KR++ EV  DALGEE+KGYV +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  LQ KR RI+                  LLA R+KE +E+R E +AK+R
Sbjct:    1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCY--RPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRR 232          
BLAST of CV885385 vs. ExPASy Swiss-Prot
Match: RS6_HUMAN (40S ribosomal protein S6 OS=Homo sapiens GN=RPS6 PE=1 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 1.256e-64
Identity = 134/236 (56.78%), Postives = 160/236 (67.80%), Query Frame = 2
Query:   53 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXXLLATRLKEQRERRSESLAKKR 760
            MK NI+ P TGCQK +E+DD++KLR F++KR++ EV  DALGEE+KGYV +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  LQ KR RI+                  LLA R+KE +E+R E +AK+R
Sbjct:    1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCY--RPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRR 232          
BLAST of CV885385 vs. ExPASy Swiss-Prot
Match: RS6_BOVIN (40S ribosomal protein S6 OS=Bos taurus GN=RPS6 PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 2.142e-64
Identity = 134/236 (56.78%), Postives = 159/236 (67.37%), Query Frame = 2
Query:   53 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXXLLATRLKEQRERRSESLAKKR 760
            MK NI+ P TGCQK +E+DD++KLR F++KR++ EV  DALGEE+KGYV +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+       K  +KAPKIQRLVTP  LQ KR RI+                  LLA R+KE +E+R E +AK+R
Sbjct:    1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCY--RPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKDGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRR 232          
BLAST of CV885385 vs. ExPASy Swiss-Prot
Match: RS6_ICTPU (40S ribosomal protein S6 OS=Ictalurus punctatus GN=rps6 PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 6.231e-64
Identity = 132/236 (55.93%), Postives = 160/236 (67.80%), Query Frame = 2
Query:   53 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXXLLATRLKEQRERRSESLAKKR 760
            MK NI+ P TGCQK +E+DD++KLR F++KR++ EV  D LG+E+KGYV +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVI++KGE D+PGLTD+  PR  GPKRAS+IRKLFNLSKEDDVR+YV   RR  T +  K  +KAPKIQRLVTP  LQ KR RI+                  LLA RLKE +E+R E +AK+R
Sbjct:    1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADPLGDEWKGYVVRISGGNDKQGFPMKQGVLTNGRVRLLLSKGHSCY--RPRRTGERKRKSVRGCIVDANLSVLNLVIIRKGEKDIPGLTDSTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRRPLTKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKRQRTQKNKDEAAEYAKLLAKRLKEAKEKRQEKIAKRR 232          
BLAST of CV885385 vs. ExPASy Swiss-Prot
Match: RS6_CHICK (40S ribosomal protein S6 OS=Gallus gallus GN=RPS6 PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 2.368e-63
Identity = 131/236 (55.51%), Postives = 159/236 (67.37%), Query Frame = 2
Query:   53 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXXLLATRLKEQRERRSESLAKKR 760
            MK NI+ P TGCQK +E+DD++ +R F++KR++ EV  D+LGEE+KGYV +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  LQ KR RI+                  LLA R+KE +E+R E +AK+R
Sbjct:    1 MKLNISFPATGCQKLIEVDDERNVRTFYEKRMATEVAADSLGEEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCY--RPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTQKNKEEAADYAKLLAKRMKEAKEKRQEQIAKRR 232          
The following BLAST results are available for this feature:
BLAST of CV885385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RS62_ARATH1.792e-10380.7540S ribosomal protein S6-2 OS=Arabidopsis thaliana... [more]
RS6_ASPOF3.992e-10380.7540S ribosomal protein S6 OS=Asparagus officinalis ... [more]
RS61_ARATH7.529e-10279.5040S ribosomal protein S6-1 OS=Arabidopsis thaliana... [more]
RS6_RAT1.256e-6456.7840S ribosomal protein S6 OS=Rattus norvegicus GN=R... [more]
RS6_MOUSE1.256e-6456.7840S ribosomal protein S6 OS=Mus musculus GN=Rps6 P... [more]
RS6_MACFA1.256e-6456.7840S ribosomal protein S6 OS=Macaca fascicularis GN... [more]
RS6_HUMAN1.256e-6456.7840S ribosomal protein S6 OS=Homo sapiens GN=RPS6 P... [more]
RS6_BOVIN2.142e-6456.7840S ribosomal protein S6 OS=Bos taurus GN=RPS6 PE=... [more]
RS6_ICTPU6.231e-6455.9340S ribosomal protein S6 OS=Ictalurus punctatus GN... [more]
RS6_CHICK2.368e-6355.5140S ribosomal protein S6 OS=Gallus gallus GN=RPS6 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_015D05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_015_T7_D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885385 ID=CV885385; Name=CV885385; organism=Citrus sinensis; type=EST; length=943bp
CTAGAGCCGAAGCGCTTCTCATCTCTTCAGCCACAGACTCCATCGAACAA
AGATGAAGTTCAATATCGCAAATCCCACCACTGGGTGCCAGAAGAAGCTC
GAAATTGACGATGACCAGAAACTTCGAGCATTTTTTGATAAGAGGATCTC
TCAAGAAGTCAATGGAGATGCTCTTGGCGAGGAGTTCAAGGGATATGTGT
TCAAGATTATGGGTGGCTGCGACAAGCAAGGTTTTCCCATGAAGCAAGGA
GTGCTGACTCCCGGCCGTGTTCGTCTTCTGCTCCACCGTGGTACCCCTTG
CTTCCGTGGCTATGGCAGGAGAGATGGAGAGCGCAGGAGGAAGTCTGTTC
GTGGATGCATAGTTAGTCCAGATCTCTCCGTGTTGAATTTGGTCATTGTG
AAAAAGGGAGAACATGACCTTCCTGGACTTACCGATACAGAAAAGCCCAG
AATGAGAGGTCCCAAGAGAGCATCGAAGATCAGGAAGTTGTTCAACCTTT
CCAAGGAGGATGATGTTAGGAAGTACGTTAACACCTATCGTCGGACCTTC
ACAACAAAATCTGGTAAGAAGGTTAGCAAGGCACCGAAAATTCAGAGGTT
GGTAACTCCTTTGACTCTGCAAAGGAAGCGTGCAAGAATTTCAGAAAAGA
AGCAGAGAATTGCCAAGGCCAAGGCTGAAGCAGCGGAATACCAGAAGCTC
CTTGCTACCAGGTTGAAGGAGCAGCGTGAACGCCGCAGTGAGAGTTTGGC
AAAGAAGAGGTCTAGGCTCTCTGCTGCCTCAAAGCCATCTATTGCAGCTT
AGATTCTTTGCTATAGTTGTTCTTTGGTCGGTTATGTATTGTCCTGCTGA
ATACTTTCTAATAGGTTGAGGAAATTTCGAGTGTTTTTGACTTANTATCC
CATGGAATGTGATACAATAACCTTCATAGACACTTTTCCGCCT
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