EY665393

Overview
NameEY665393
Unique NameEY665393
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1208
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665393 vs. ExPASy Swiss-Prot
Match: LS14A_XENTR (Protein LSM14 homolog A OS=Xenopus tropicalis GN=lsm14a PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.345e-11
Identity = 59/180 (32.78%), Postives = 88/180 (48.89%), Query Frame = 1
Query:  118 YICRLISLTSMSDIRYQGVLFNIFAE*SSICLRSV*SFATQGRKRDGPHFLSYDYIYEYLLFQGSDITDLQD*SSPQIQTTTSIRNDRAIIQSHYSQAAISCTSLPSGTRS*RDTNFPNVTAPTFETSGSRDSSALTSGWKFGCMGSSPCPEQWGLAAMPKTGKDTLVTNWLPGTQNFGS 657
            YI   ISL S ++IRY+G+L+ I  E S++ L  V SF T+ R  D P     D ++EY++F+GSDI DL     P+ Q   S+  D AI+QS    ++ S     S       +  P    PT+    S+ S++   G +FG +GSS          +   G +T  +  LP +   GS
Sbjct:    7 YIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRP-IPPRDEVFEYIIFRGSDIKDLTVCEPPKPQ--CSLPQDPAIVQSSLGSSSASSFQSVS-------SYGPFGRMPTY----SQFSTSPLVGQQFGAVGSS----------LTSFGAETTSSTSLPPSSTVGS 162          
BLAST of EY665393 vs. ExPASy Swiss-Prot
Match: LS14A_PONAB (Protein LSM14 homolog A OS=Pongo abelii GN=LSM14A PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.674e-11
Identity = 58/180 (32.22%), Postives = 88/180 (48.89%), Query Frame = 1
Query:  118 YICRLISLTSMSDIRYQGVLFNIFAE*SSICLRSV*SFATQGRKRDGPHFLSYDYIYEYLLFQGSDITDLQD*SSPQIQTTTSIRNDRAIIQSHYSQAAISCTSLPSGTRS*RDTNFPNVTAPTFETSGSRDSSALTSGWKFGCMGSSPCPEQWGLAAMPKTGKDTLVTNWLPGTQNFGS 657
            YI   ISL S ++IRY+G+L+ I  E S++ L  V SF T+ R  D P     D ++EY++F+GSDI DL     P+ Q   S+  D AI+QS    +  S  S+ S          P    PT+    S+ S +   G +FG +G +        +++   G +T  +  LP +   GS
Sbjct:    7 YIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRP-IPPRDEVFEYIIFRGSDIKDLTVCEPPKPQ--CSLPQDPAIVQSSLGSSTSSFQSMGS--------YGPFGRMPTY----SQFSPSSLVGQQFGAVGVAG-------SSLTSFGTETSNSGTLPQSSAVGS 164          
BLAST of EY665393 vs. ExPASy Swiss-Prot
Match: LS14A_HUMAN (Protein LSM14 homolog A OS=Homo sapiens GN=LSM14A PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 6.674e-11
Identity = 58/180 (32.22%), Postives = 88/180 (48.89%), Query Frame = 1
Query:  118 YICRLISLTSMSDIRYQGVLFNIFAE*SSICLRSV*SFATQGRKRDGPHFLSYDYIYEYLLFQGSDITDLQD*SSPQIQTTTSIRNDRAIIQSHYSQAAISCTSLPSGTRS*RDTNFPNVTAPTFETSGSRDSSALTSGWKFGCMGSSPCPEQWGLAAMPKTGKDTLVTNWLPGTQNFGS 657
            YI   ISL S ++IRY+G+L+ I  E S++ L  V SF T+ R  D P     D ++EY++F+GSDI DL     P+ Q   S+  D AI+QS    +  S  S+ S          P    PT+    S+ S +   G +FG +G +        +++   G +T  +  LP +   GS
Sbjct:    7 YIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRP-IPPRDEVFEYIIFRGSDIKDLTVCEPPKPQ--CSLPQDPAIVQSSLGSSTSSFQSMGS--------YGPFGRMPTY----SQFSPSSLVGQQFGAVGVAG-------SSLTSFGTETSNSGTLPQSSAVGS 164          
The following BLAST results are available for this feature:
BLAST of EY665393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LS14A_XENTR1.345e-1132.78Protein LSM14 homolog A OS=Xenopus tropicalis GN=l... [more]
LS14A_PONAB6.674e-1132.22Protein LSM14 homolog A OS=Pongo abelii GN=LSM14A ... [more]
LS14A_HUMAN6.674e-1132.22Protein LSM14 homolog A OS=Homo sapiens GN=LSM14A ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-007-D06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665393 ID=EY665393; Name=EY665393; organism=Citrus sinensis; type=EST; length=1208bp
ATTGTCTCGAGGAGATTGATAATAGAAGGTGAGAAAAAGACACTCTACTC
TTAGGCTAATGTGCTCATGCGATGACATCAGACGCCCATATCTTCTTCAA
CTGGGTCTGCTGATTCATACATCTGTAGATTGATCAGCTTGACTTCCATG
TCTGACATTCGATACCAGGGTGTTCTCTTTAACATCTTCGCTGAATAATC
TAGCATCTGTTTGAGAAGTGTATGATCTTTTGCAACACAAGGGCGCAAAA
GAGATGGTCCCCACTTTCTTTCATATGACTATATTTACGAGTACCTACTC
TTTCAAGGAAGTGATATCACGGATTTGCAAGACTGATCATCGCCACAGAT
TCAGACTACAACATCTATACGCAATGATCGTGCTATTATACAGTCGCACT
ATTCTCAGGCAGCAATTAGCTGCACAAGCCTGCCTTCTGGCACTAGATCG
TGACGTGATACCAACTTCCCCAACGTCACAGCTCCGACTTTCGAGACGTC
CGGTTCTCGCGATTCCTCCGCTTTGACATCCGGCTGGAAGTTTGGCTGCA
TGGGTTCGTCACCATGCCCAGAACAATGGGGCTTGGCTGCCATGCCAAAG
ACTGGGAAGGATACATTGGTCACAAATTGGCTTCCAGGCACCCAAAACTT
TGGTTCCCCCCCCCCGGATGAAATGGGCCTCCATAGATAAACCGGCAAAA
TTTGGTGAAATTTCCTATCTTCGGGTTTCCATTAAAATTTCCTTGGGGAA
AACCCCCCCTTTTTGGCCCCTTTTTAGAACTTGATTGGGTCTCTTTTCTC
GCCTTTTCCCGATTTAAACCAAATACGTTTCCTGGGGTCACCCAACCGCA
CTGATCATTAATTTCTTTGGCCTCTATTGGTAAAAATGGGGCACTTTGGC
AACTTCGGCCTTGGTTTAACATTTTATCTCTTTGGGAATTTGTATAAGAA
ACTTTACCCCCCCCCCCCGCCCCTTCCTCCCCCCCAAAAGGGGAATTCCC
CCCCCCCCCCCAACCCCCCTCCCCTGTCCCTTACGGTGAGGAACTCGCTT
CTAATGGATGTACATAATCGATCGCCTGTACGGAGGACAAACGGAGATAT
AGGGGCGGTAGCGTACGGCGCGCGGAGAANNNACTTTCAGCAATTATATG
CATAGTGCTAAGTTTAGTNGAGGNATAGTCTTTACTGGTGGGAGGGATTT
ATGACTAC
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