CV885327

Overview
NameCV885327
Unique NameCV885327
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig323 contig Csv1_Contig323:32..648. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CV885327 vs. ExPASy Swiss-Prot
Match: Y5486_ARATH (Uncharacterized protein At5g64816 OS=Arabidopsis thaliana GN=At5g64816 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.765e-56
Identity = 100/127 (78.74%), Postives = 116/127 (91.34%), Query Frame = 3 
Query:  126 MVDPWWSLLGAAIPAVIMGQALRMKKRRAEEQRLKSARGREKSSDDIFVCERVCTSKRMLKKVGSLSKEPTIDTCVTVCGVSQIDACADACARTVCVNQHQVPNWNDICLRKCQSECLRLSNSSVMS 506
            MV+ WWSL+GAA+PA+I GQA R+KKR  EE+R+KSARGREKSSD+IFVCERVCTSKRMLKKVG+ SK+P  DTCVTVCGVS++DAC+DACARTVCVNQHQV NWNDICLR+CQSECL+LS+SS  S
Sbjct:    1 MVEVWWSLIGAAVPALIAGQAWRIKKRHGEEERIKSARGREKSSDEIFVCERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVANWNDICLRRCQSECLKLSSSSSSS 127
The following BLAST results are available for this feature:
BLAST of CV885327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5486_ARATH1.765e-5678.74Uncharacterized protein At5g64816 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_015A09_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_015_T3_A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885327 ID=CV885327; Name=CV885327; organism=Citrus sinensis; type=EST; length=617bp
CTCAAAACCCCAATTTGCAAAACTCCTTTAGCTGTTCTTTCCGTGTCCTC
TCCGGTCGATAAGCTCCGTTCCGCCATCGCCATCGCCATCGCCGAGATCA
TTAAGCCCCGTCTCCCACTGAAGTCATGGTGGATCCATGGTGGTCACTAT
TAGGCGCAGCTATACCAGCTGTAATCATGGGACAAGCTCTGAGGATGAAG
AAAAGGAGAGCGGAAGAACAGAGGCTGAAGAGTGCAAGAGGGCGTGAGAA
GAGCTCTGATGATATCTTTGTATGCGAGAGGGTGTGCACTTCAAAGAGGA
TGCTAAAGAAGGTTGGTTCATTATCTAAAGAGCCGACCATTGACACTTGT
GTCACTGTTTGTGGTGTTTCTCAGATTGATGCTTGTGCTGATGCATGTGC
AAGAACTGTTTGTGTCAATCAACACCAAGTCCCCAATTGGAATGATATAT
GTCTTAGGAAGTGCCAAAGTGAGTGCCTTAGGTTATCAAATTCCTCTGTC
ATGTCATAATAGCATTGTCTTCATGTTGCCCTATCTACTATTTGGCTGGA
ATTTTTAAAACTAGTTTCTTGCAATATACATTTAATTTAGTGAATTGATA
TACCTATTCCATGAAAA
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