CV885249

Overview
NameCV885249
Unique NameCV885249
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885249 vs. ExPASy Swiss-Prot
Match: CADH1_ARATH (Probable cinnamyl alcohol dehydrogenase 1 OS=Arabidopsis thaliana GN=CAD1 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.309e-35
Identity = 65/83 (78.31%), Postives = 75/83 (90.36%), Query Frame = 3
Query:  594 PGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCKYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKI 842
            PGHEI GIV +VG NV RFKVGDHVGVGTYVNSCR+C+YCN+G EV+CA+ V+TFN ID DG++TKGGYSS+IVVHERYCYKI
Sbjct:   68 PGHEIAGIVTKVGPNVQRFKVGDHVGVGTYVNSCRECEYCNEGQEVNCAKGVFTFNGIDHDGSVTKGGYSSHIVVHERYCYKI 150          
BLAST of CV885249 vs. ExPASy Swiss-Prot
Match: CADH1_ORYSJ (Probable cinnamyl alcohol dehydrogenase 1 OS=Oryza sativa subsp. japonica GN=CAD1 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.075e-32
Identity = 59/83 (71.08%), Postives = 71/83 (85.54%), Query Frame = 3
Query:  594 PGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCKYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKI 842
            PGHEI G+V EVG +V  FKVGDHVGVGTYVNSCRDC+ CN  LE +C++ V+TFN +D DGT+TKGGYS++IVVHERYC+KI
Sbjct:   67 PGHEIAGVVTEVGADVKSFKVGDHVGVGTYVNSCRDCENCNSSLENYCSQHVFTFNGVDTDGTVTKGGYSTHIVVHERYCFKI 149          
BLAST of CV885249 vs. ExPASy Swiss-Prot
Match: CADH4_ORYSJ (Putative cinnamyl alcohol dehydrogenase 4 OS=Oryza sativa subsp. japonica GN=CAD4 PE=3 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 7.685e-31
Identity = 56/83 (67.47%), Postives = 71/83 (85.54%), Query Frame = 3
Query:  594 PGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCKYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKI 842
            PGHEI G+V EVG +V  FKVGDHVGVG YVNSC+DC+ CN  LE HC++ V T+N++D+DGT+TKGGYSS+I+VH+RYC+KI
Sbjct:   67 PGHEIAGVVTEVGADVKGFKVGDHVGVGVYVNSCQDCENCNSSLENHCSKCVVTYNSVDSDGTVTKGGYSSHILVHQRYCFKI 149          
BLAST of CV885249 vs. ExPASy Swiss-Prot
Match: CADH3_ORYSJ (Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza sativa subsp. japonica GN=CAD3 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.500e-26
Identity = 51/79 (64.56%), Postives = 62/79 (78.48%), Query Frame = 3
Query:  594 PGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCKYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERY 830
            PGHEI G+V EVG NV+RFK GD VGVG  VNSCR C+ CN+G E HC   V+T+N++D DGT+T GGYSS +VVHER+
Sbjct:   73 PGHEIAGVVTEVGKNVTRFKAGDRVGVGCMVNSCRSCESCNNGFENHCPEGVFTYNSVDKDGTVTYGGYSSMVVVHERF 151          
BLAST of CV885249 vs. ExPASy Swiss-Prot
Match: CADH5_ORYSJ (Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza sativa subsp. japonica GN=CAD5 PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 3.127e-24
Identity = 48/79 (60.76%), Postives = 59/79 (74.68%), Query Frame = 3
Query:  594 PGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCKYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERY 830
            PGHEI G+V E G NV++FK GD VGVG  VNSC  C  CN GLE HC   ++T+N++D DGT+T GGYSS +VVHER+
Sbjct:   63 PGHEIAGVVTEAGKNVTKFKGGDKVGVGCMVNSCHSCDSCNQGLENHCPGVIFTYNSVDKDGTVTYGGYSSMVVVHERF 141          
BLAST of CV885249 vs. ExPASy Swiss-Prot
Match: CADH6_ARATH (Probable cinnamyl alcohol dehydrogenase 6 OS=Arabidopsis thaliana GN=CAD6 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.416e-21
Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = 3
Query:  594 PGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCKYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKI 842
            PGHEI+G V E+G+ VS+F +GD VGVG  V+SCR C+ C +  E +C +++ T+N +  DGTI  GGYS +IVV ERY  KI
Sbjct:   71 PGHEIIGEVSEIGNKVSKFNLGDKVGVGCIVDSCRTCESCREDQENYCTKAIATYNGVHHDGTINYGGYSDHIVVDERYAVKI 153          
BLAST of CV885249 vs. ExPASy Swiss-Prot
Match: CADH_PINTA (Probable cinnamyl alcohol dehydrogenase OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.098e-20
Identity = 41/83 (49.40%), Postives = 61/83 (73.49%), Query Frame = 3
Query:  594 PGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCKYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKI 842
            PGHE+VGIV E+G  V +FKVG+HVGVG  V SCR C  CN  +E +C++ ++T+N ++ DGT T+GG++S +VV + +  +I
Sbjct:   67 PGHEVVGIVTEIGSEVKKFKVGEHVGVGCIVGSCRSCGNCNQSMEQYCSKRIWTYNDVNHDGTPTQGGFASSMVVDQMFVVRI 149          
BLAST of CV885249 vs. ExPASy Swiss-Prot
Match: CADH_PINRA (Probable cinnamyl alcohol dehydrogenase OS=Pinus radiata GN=CAD PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.098e-20
Identity = 41/83 (49.40%), Postives = 61/83 (73.49%), Query Frame = 3
Query:  594 PGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCKYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKI 842
            PGHE+VGIV E+G  V +FKVG+HVGVG  V SCR C  CN  +E +C++ ++T+N ++ DGT T+GG++S +VV + +  +I
Sbjct:   67 PGHEVVGIVTEIGSEVKKFKVGEHVGVGCIVGSCRSCGNCNQSMEQYCSKRIWTYNDVNHDGTPTQGGFASSMVVDQMFVVRI 149          
BLAST of CV885249 vs. ExPASy Swiss-Prot
Match: CADH7_PICAB (Probable cinnamyl alcohol dehydrogenase 7/8 OS=Picea abies GN=CAD7 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.098e-20
Identity = 40/83 (48.19%), Postives = 61/83 (73.49%), Query Frame = 3
Query:  594 PGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCKYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKI 842
            PGHE+VG+V E+G  V +FKVG+HVGVG  V SCR C  CN  +E +C++ ++T+N ++ DGT T+GG++S +VV + +  +I
Sbjct:   67 PGHEVVGVVTEIGSEVKKFKVGEHVGVGCIVGSCRSCSNCNGSMEQYCSKRIWTYNDVNHDGTPTQGGFASSMVVDQMFVVRI 149          
BLAST of CV885249 vs. ExPASy Swiss-Prot
Match: CADH2_PICAB (Probable cinnamyl alcohol dehydrogenase 2 OS=Picea abies GN=CAD2 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.098e-20
Identity = 40/83 (48.19%), Postives = 61/83 (73.49%), Query Frame = 3
Query:  594 PGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCKYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKI 842
            PGHE+VG+V E+G  V +FKVG+HVGVG  V SCR C  CN  +E +C++ ++T+N ++ DGT T+GG++S +VV + +  +I
Sbjct:   67 PGHEVVGVVTEIGSEVKKFKVGEHVGVGCIVGSCRSCSNCNGSMEQYCSKRIWTYNDVNHDGTPTQGGFASSMVVDQMFVVRI 149          
The following BLAST results are available for this feature:
BLAST of CV885249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
CADH1_ARATH2.309e-3578.31Probable cinnamyl alcohol dehydrogenase 1 OS=Arabi... [more]
CADH1_ORYSJ4.075e-3271.08Probable cinnamyl alcohol dehydrogenase 1 OS=Oryza... [more]
CADH4_ORYSJ7.685e-3167.47Putative cinnamyl alcohol dehydrogenase 4 OS=Oryza... [more]
CADH3_ORYSJ1.500e-2664.56Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza... [more]
CADH5_ORYSJ3.127e-2460.76Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza... [more]
CADH6_ARATH9.416e-2153.01Probable cinnamyl alcohol dehydrogenase 6 OS=Arabi... [more]
CADH_PINTA2.098e-2049.40Probable cinnamyl alcohol dehydrogenase OS=Pinus t... [more]
CADH_PINRA2.098e-2049.40Probable cinnamyl alcohol dehydrogenase OS=Pinus r... [more]
CADH7_PICAB2.098e-2048.19Probable cinnamyl alcohol dehydrogenase 7/8 OS=Pic... [more]
CADH2_PICAB2.098e-2048.19Probable cinnamyl alcohol dehydrogenase 2 OS=Picea... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013E10_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T3_E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885249 ID=CV885249; Name=CV885249; organism=Citrus sinensis; type=EST; length=848bp
ATTTATAATTTAAAGAATTTCTAAAACGACTCTCTTGAGCTTTATTATTA
ATAAAGCCACTTATTTACAAAAGGATTAACATTGGAAGGAGCAAAAAAGT
ATACACTTTTCATCCGTTTCCATATGATAGAAACAAGAACAAGTAAAGGA
AAAATTATTAATTCAGCAAGGTAATATAGAGGAAATAAATTAAGATTATT
AGAGTTGATGGATATAAATAAATTAATTAAAAGAAACTGCTAGTTCTTGG
TGTTCATGCTTTTTGTAACTTGCTCAGCATTTTGTTTGACGGCTTCCTTA
GATTTATCAGCCTTTCCGAGCAAATTATCTTTGACAGTTTGAGCAGTGTC
TTTGGCCGAACCCCATGCATCTTGAACTGTTTGTTTTGCCTTATCACCAA
TGTCTTGTGCTGTTTCAGACACCTTTCCAGCCTTATCTTTTGTAATATGA
CTCATCTGAATGTATCTAGGTTTTGAGGCAAGAAATTGCTTAGAATTCCA
AATGCTTCTCCTAGCAATTGCAAGTTTTGAAAGAGTGGAACTTGCCATTA
TTATTTTTCTTTTGTTTTCTTTTTATTATCTTCTACTTTGGTGCCTGGAC
ATGAGATTGTTGGAATTGTGAAAGAGGTTGGTCACAATGTTAGCCGCTTC
AAAGTTGGTGACCATGTTGGCGTGGGAACTTATGTCAACTCATGCAGAGA
TTGTAAGTATTGTAATGATGGGCTAGAAGTTCATTGTGCTCGGTCAGTTT
ACACTTTTAATGCCATTGATGCGGATGGTACTATCACAAAAGGAGGGTAT
TCTAGTTACATTGTTGTCCATGAGAGATACTGTTATAAAATAGCCAAT
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