CV885247

Overview
NameCV885247
Unique NameCV885247
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length849
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1828 contig Csv1_Contig1828:62..910. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CV885247 vs. ExPASy Swiss-Prot
Match: TSJT1_TOBAC (Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.854e-25
Identity = 60/150 (40.00%), Postives = 87/150 (58.00%), Query Frame = 1 
Query:   31 MLAIFHKAFANPPEELHSPASQKCSKRPKLPEDTLSDFLSRHPDNTFSMNFGHAAVLAYVPPHSPLTKDRRLFCGFEDIYCLFMGSLNNLCSLIRQYGLSKGTDEAMFVIEAYRTLRDRGPYPADQVVKDLDGSFAFVVYDSKAGTVFTA 480
            MLA+F ++   PP EL  P +    K  K  E+    F +   D+TF   F    +       +PL    R     +D++C+F G+L+N   L + YGLS+   EAM ++EAY+ LRDR PYP DQV+K+L+G FAF+++DSKA T+F A
Sbjct:    1 MLAVFEQSIGRPPPELSLPQAGIQKKEAKTREEIAESFKTWKQDSTFYHLFNGNFMAFSHGNENPLQP--RSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKFAFILFDSKASTLFLA 148
The following BLAST results are available for this feature:
BLAST of CV885247 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TSJT1_TOBAC4.854e-2540.00Stem-specific protein TSJT1 OS=Nicotiana tabacum G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013E09_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T3_E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885247 ID=CV885247; Name=CV885247; organism=Citrus sinensis; type=EST; length=849bp
CTCAAGAAAGGAAATTTTGTTATAAAGAATATGTTGGCGATATTTCACAA
GGCGTTTGCCAATCCGCCTGAGGAGCTTCATAGCCCTGCGTCTCAAAAAT
GTTCGAAGAGGCCTAAACTCCCTGAGGATACCCTCAGTGACTTCCTCTCC
CGTCACCCGGATAACACTTTCTCCATGAACTTTGGCCATGCTGCTGTTCT
TGCTTACGTCCCCCCTCACTCCCCTTTAACCAAGGACCGAAGGTTGTTTT
GCGGGTTTGAGGACATATACTGTCTGTTCATGGGGTCCTTGAACAACTTG
TGTTCGCTGATCAGGCAATATGGGTTGTCAAAGGGAACCGATGAGGCCAT
GTTTGTGATAGAGGCGTATCGTACGCTCAGAGACCGGGGTCCTTACCCAG
CTGACCAGGTTGTCAAGGATCTTGATGGGAGCTTTGCTTTTGTGGTCTAC
GATAGCAAGGCCGGCACGGTCTTCACTGCTCTGGGTTCTGATGGGGGAGT
GAAGCTGTACTGGGGAATTGCAGCCGATGGATCTGTGGTCATATCTGATG
ACTTGGAGGTCATCAAAGAGGGATGTGCCAAGTCATTTGCTCCCTTCCCA
CAGGGGTGCATGTTCCACAGTGAAGGAGGATTGATGAGCTTTGAGCATCC
AATGAACAAGATAAGGGCAATGCCAAGAGTAGATAGTGAAGGTGTCATGT
GTGGAGCCAATTTCAAGGTTGATAAATACACTAGGATCAACAGCATTCCA
CGTGTGGGAAGTGAAGCAGACTGGACTAATCAATGGGACTCACATTAATT
TATCAATTAAGGATCAATTTGATTGATCTTGCTGTGAATTTGCCTACTT
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