CV885176

Overview
NameCV885176
Unique NameCV885176
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length915
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885176 vs. ExPASy Swiss-Prot
Match: GLYM_PEA (Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 327.405 bits (838), Expect = 7.005e-89
Identity = 156/218 (71.56%), Postives = 181/218 (83.03%), Query Frame = 3
Query:  261 DPEVREIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKY 914
            DPE+ +II  EK RQ+K LELI SENFTS +VM+AVGS +TNKYSEG PG RYYGGNEYID  ETLCQKRAL AF LD  KWGVNVQPLSGSP+NF+VYTA+LKPHDRIM LDLPHGGHLSHG+ T  +++S  SI+FE+MPYRLDESTG +DYD LEK+A LFRPKLI+AGASAY R +DY R+R++ D   A+L+ DMAHISGLVAA V+  PF Y
Sbjct:   60 DPEIADIIELEKARQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYARIRKVCDKQKAVLLADMAHISGLVAAGVIPSPFDY 277          
BLAST of CV885176 vs. ExPASy Swiss-Prot
Match: GLYM_ARATH (Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1)

HSP 1 Score: 326.635 bits (836), Expect = 1.195e-88
Identity = 155/222 (69.82%), Postives = 183/222 (82.43%), Query Frame = 3
Query:  249 LGEADPEVREIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKY 914
            L E DPE+ +II  EK RQ+K LELI SENFTS +VM+AVGS +TNKYSEG PG RYYGGNEYID  ETLCQKRAL AF LD  KWGVNVQPLSGSPANF VYTA+LKPH+RIM LDLPHGGHLSHG+ T  +++S  SI+FE+MPYRLDESTG +DYD +EK+A LFRPKLI+AGASAY R +DY R+R++ +   A+++ DMAHISGLVAA+V+  PF Y
Sbjct:   55 LEEVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFHVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQMEKSATLFRPKLIVAGASAYARLYDYARIRKVCNKQKAVMLADMAHISGLVAANVIPSPFDY 276          
BLAST of CV885176 vs. ExPASy Swiss-Prot
Match: GLYM_SOLTU (Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 325.479 bits (833), Expect = 2.662e-88
Identity = 155/218 (71.10%), Postives = 181/218 (83.03%), Query Frame = 3
Query:  261 DPEVREIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKY 914
            DPE+ +II  EK RQ+K LELI SENFTS +VM+AVGS +TNKYSEG PG RYYGGNEYID  ETLCQKRAL AF LD  KWGVNVQPLSGSPANF+VYTA+LKPH+RIM LDLPHGGHLSHG+ T  +++S  SI+FE+MPYRLDESTG +DYD LEK+A LFRPKLI+AGASAY R +DY R+R++ +   A+L+ DMAHISGLVAA V+  PF Y
Sbjct:   60 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPANFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYDRIRKVCNKQKAILLADMAHISGLVAAGVIPSPFDY 277          
BLAST of CV885176 vs. ExPASy Swiss-Prot
Match: GLYC1_DICDI (Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum GN=shmt1 PE=1 SV=1)

HSP 1 Score: 325.094 bits (832), Expect = 3.477e-88
Identity = 158/230 (68.70%), Postives = 189/230 (82.17%), Query Frame = 3
Query:  225 GSSFVDYSLGEADPEVREIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKY 914
            GS   +  L E D E+ E++ +EK+RQFK LELIASENFTSRAVMEA+GS  TNKY+EG PG RYYGG E +DELETLCQKRAL AF LDE+KWGVNVQP SGSPANF VYTA+L+PHDRIMGLDLP GGHL+HG+ T K+++S +SI+FESMPY++  + GL+DY  LE+ A+LF+PKLII+GASAYPR++DY RMR IAD VGA LM DMAH SGLVAA ++  PF Y
Sbjct:    2 GSVSGNTPLKEVDNEIFELMNREKDRQFKGLELIASENFTSRAVMEALGSHFTNKYAEGYPGSRYYGGTEVVDELETLCQKRALKAFRLDESKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGYQTDKKKISASSIFFESMPYQIG-ADGLIDYQRLEENALLFKPKLIISGASAYPREWDYKRMRAIADKVGAYLMCDMAHYSGLVAAQLLDSPFDY 230          
BLAST of CV885176 vs. ExPASy Swiss-Prot
Match: GLYN_FLAPR (Serine hydroxymethyltransferase 2, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 1.321e-87
Identity = 155/218 (71.10%), Postives = 179/218 (82.11%), Query Frame = 3
Query:  261 DPEVREIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKY 914
            DPE+ +II  EK RQ+K LELI SENFTS +VM+AVGS +TNKYSEG PG RYYGGNEYID  ETLCQKRAL AF LD  KWGVNVQPLSGSPANF VYTA+LK HDRIM LDLPHGGHLSHG+ T  +++S  SI+FE+MPYRL+ESTG +DYD LEK+A LFRPKLI+AGASAY R +DY R+R++ D   A+L+ DMAHISGLVAA V+  PF Y
Sbjct:   60 DPEIADIIELEKARQWKGLELILSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDAAKWGVNVQPLSGSPANFHVYTALLKAHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYARIRKVCDKQKAILLADMAHISGLVAAGVIPSPFDY 277          
BLAST of CV885176 vs. ExPASy Swiss-Prot
Match: GLYM_FLAPR (Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 322.398 bits (825), Expect = 2.254e-87
Identity = 154/218 (70.64%), Postives = 179/218 (82.11%), Query Frame = 3
Query:  261 DPEVREIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKY 914
            DPE+ +II  EK RQ+K LELI SENFTS +VM+AVGS +TNKYSEG PG RYYGGNEYID  ETLCQKRAL AF LD  KWGVNVQPLSGSPANF VYTA+LK HDRIM LDLPHGGHLSHG+ T  +++S  SI+FE+MPYRL+ESTG +DYD LEK+A LFRPKLI+AGASAY R +DY R+R++ D   A+++ DMAHISGLVAA V+  PF Y
Sbjct:   60 DPEIADIIELEKARQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPANFHVYTALLKAHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYARIRKVCDKQKAIMLADMAHISGLVAAGVIPSPFDY 277          
BLAST of CV885176 vs. ExPASy Swiss-Prot
Match: GLYC2_DICDI (Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum GN=shmt2 PE=3 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 6.137e-85
Identity = 148/223 (66.37%), Postives = 182/223 (81.61%), Query Frame = 3
Query:  246 SLGEADPEVREIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKY 914
            S+ E+DPE+ +++ KEK+RQF  LELIASENFTSRAVME++GSC TNKY+EGLPG RYYGGNE +D+LE LC KRAL  FNL+  +WGVNVQP SGS ANF  +T +LKPHDRIMGLDLP GGHL+HG+ T K+++S TSI+FESMPY+++E TG VDY+ +E  A LFRPKL+IAGASAYPR++DY RMR+IAD  GA L+ DMAHISG+VA      PF +
Sbjct:   33 SVSESDPEIYDLMMKEKQRQFTGLELIASENFTSRAVMESIGSCFTNKYAEGLPGARYYGGNEVVDQLENLCIKRALETFNLNPEEWGVNVQPYSGSTANFAAFTGLLKPHDRIMGLDLPSGGHLTHGYQTDKKKISATSIFFESMPYQVNE-TGYVDYNKMEANAALFRPKLLIAGASAYPREWDYERMRKIADKHGAYLLCDMAHISGMVAGKQAISPFLF 254          
BLAST of CV885176 vs. ExPASy Swiss-Prot
Match: GLYM_HUMAN (Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2 PE=1 SV=3)

HSP 1 Score: 313.153 bits (801), Expect = 1.367e-84
Identity = 149/223 (66.82%), Postives = 182/223 (81.61%), Query Frame = 3
Query:  246 SLGEADPEVREIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKY 914
            SL ++DPE+ E++ +EK+RQ + LELIASENF SRA +EA+GSCL NKYSEG PGKRYYGG E +DE+E LCQ+RAL AF+LD  +WGVNVQP SGSPAN  VYTA+L+PHDRIMGLDLP GGHL+HG+M+  +R+S TSI+FESMPY+L+  TGL+DY+ L  TA LFRP+LIIAG SAY R  DY RMR++ D V A L+ DMAHISGLVAA V+  PFK+
Sbjct:   48 SLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKH 270          
BLAST of CV885176 vs. ExPASy Swiss-Prot
Match: GLYM_BOVIN (Serine hydroxymethyltransferase, mitochondrial OS=Bos taurus GN=SHMT2 PE=2 SV=1)

HSP 1 Score: 312.383 bits (799), Expect = 2.332e-84
Identity = 148/223 (66.37%), Postives = 181/223 (81.17%), Query Frame = 3
Query:  246 SLGEADPEVREIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKY 914
            SL ++DPE+ E++ +EK+RQ + LELIASENF SRA +EA+GSCL NKYSEG PGKRYYGG E +DE+E LCQ+RAL AF+LD  +WGVNVQP SGSPAN   YTA+L+PHDRIMGLDLP GGHL+HG+M+  +R+S TSI+FESMPY+L+  TGL+DYD L  TA LF+P+LIIAG SAY R  DY RMR++ D V A L+ DMAHISGLVAA V+  PFK+
Sbjct:   48 SLSDSDPEMWELLRREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAAYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPQTGLIDYDQLALTARLFKPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKH 270          
BLAST of CV885176 vs. ExPASy Swiss-Prot
Match: GLYD_SCHPO (Probable serine hydroxymethyltransferase, cytosolic OS=Schizosaccharomyces pombe GN=SPAC24C9.12c PE=2 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 3.978e-84
Identity = 150/222 (67.57%), Postives = 181/222 (81.53%), Query Frame = 3
Query:  249 LGEADPEVREIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKY 914
            L E DP V EI+  E +RQ  S+ LIASENFTSRAVM+A+GS ++NKYSEG PG RYYGGN++ID++ETLCQ+RALAAFNLD  KWGVNVQ LSGSPAN +VY AI+ PH R+MGLDLP GGHLSHG+ T  +++S  S YFESMPYR+D +TGL+DYDMLE  A LFRPK+++AG SAY R  DY RMRQIAD+V A L++DMAHISGLV+A V+  PF+Y
Sbjct:   12 LKEQDPTVAEIMRHEADRQRSSVVLIASENFTSRAVMDALGSVMSNKYSEGYPGARYYGGNKFIDQIETLCQERALAAFNLDPAKWGVNVQCLSGSPANMQVYQAIMPPHGRLMGLDLPSGGHLSHGYQTDTKKISAVSTYFESMPYRVDPNTGLIDYDMLEHDAQLFRPKILVAGTSAYCRLIDYARMRQIADSVNAYLVVDMAHISGLVSAGVIPSPFEY 233          
The following BLAST results are available for this feature:
BLAST of CV885176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYM_PEA7.005e-8971.56Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_ARATH1.195e-8869.82Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_SOLTU2.662e-8871.10Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC1_DICDI3.477e-8868.70Serine hydroxymethyltransferase 1 OS=Dictyostelium... [more]
GLYN_FLAPR1.321e-8771.10Serine hydroxymethyltransferase 2, mitochondrial O... [more]
GLYM_FLAPR2.254e-8770.64Serine hydroxymethyltransferase 1, mitochondrial O... [more]
GLYC2_DICDI6.137e-8566.37Serine hydroxymethyltransferase 2 OS=Dictyostelium... [more]
GLYM_HUMAN1.367e-8466.82Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_BOVIN2.332e-8466.37Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYD_SCHPO3.978e-8467.57Probable serine hydroxymethyltransferase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013B02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885176 ID=CV885176; Name=CV885176; organism=Citrus sinensis; type=EST; length=915bp
CAAGATGCGGCTTGTAGTGGAGCTGCAGTTATGGGTTCTCTGCACAGCCC
ATTTGGGTTAAGGGCCCTCGTTTGCCTTCCGAAGGGTCTGTGATGGTTGG
ATTTCCAAATCAGATTAGGCTCAATATGGTGAAGCCTTGTAGATGTTCTT
CAATTGAAGGAAGTTTGGTTACTGGGAGACCACCATCTTCTGTATCTGTC
CCTATACCTGAAATTGGAGGTGATGGAAGCAGCTTTGTGGATTACAGCCT
GGGTGAGGCAGATCCAGAGGTCCGTGAAATTATCACTAAGGAGAAGGAGA
GGCAGTTTAAGAGCCTTGAGCTTATAGCATCAGAAAATTTTACATCCCGA
GCAGTGATGGAGGCAGTTGGTTCATGCCTCACAAACAAATATTCTGAAGG
ACTGCCTGGTAAAAGATACTATGGTGGTAACGAGTACATTGATGAGCTTG
AAACCCTTTGTCAGAAAAGGGCTTTGGCAGCATTTAACCTAGATGAAAAT
AAGTGGGGTGTTAATGTTCAACCGCTGTCTGGTTCTCCTGCTAACTTTGA
AGTTTATACTGCAATTCTTAAACCTCATGATCGAATAATGGGTTTGGATT
TACCACATGGTGGACATTTGTCTCATGGGTTCATGACTCCTAAAAGACGG
GTTTCTGGCACCTCAATTTATTTTGAGTCTATGCCTTATCGACTTGACGA
ATCTACAGGCCTTGTTGATTATGACATGCTTGAGAAAACTGCTATTCTCT
TTCGACCGAAACTCATAATTGCTGGTGCTAGTGCTTATCCTCGTGATTTT
GACTATCCTCGCATGAGGCAGATTGCAGATGCTGTTGGTGCTTTGCTCAT
GATGGATATGGCTCACATAAGTGGCCTTGTTGCTGCCTCTGTGGTTGCTG
ACCCCTTCAAGTACT
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