EH406526

Overview
NameEH406526
Unique NameEH406526
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH406526 vs. ExPASy Swiss-Prot
Match: Y5620_ARATH (Putative RNA methyltransferase At5g10620 OS=Arabidopsis thaliana GN=At5g10620 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.880e-49
Identity = 99/158 (62.66%), Postives = 118/158 (74.68%), Query Frame = 1
Query:    1 VRALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDW--------------------------GASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 396
            VRALPIRVITVGKKRS GV+L+VDEY  KLK YC  ED  +RSNP+N  DV+AQ++DE++A+M +I SDDW                          GASRISFCIGG YGHG ++R+RAN++I+LSSMVLNHQIAL+VL+EQLYRSWTILKGQNYHH
Sbjct:   36 VRALPIRVITVGKKRSEGVRLLVDEYKIKLKPYCSFEDSLVRSNPRNAQDVRAQVEDEEVAMMKLIGSDDWVVVLDERGRDIDSEQMAELLGDAGNSGASRISFCIGGAYGHGTQVRKRANVTIRLSSMVLNHQIALVVLMEQLYRSWTILKGQNYHH 193          
BLAST of EH406526 vs. ExPASy Swiss-Prot
Match: RLMH_MYXXD (Ribosomal RNA large subunit methyltransferase H OS=Myxococcus xanthus (strain DK 1622) GN=rlmH PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.404e-13
Identity = 50/156 (32.05%), Postives = 78/156 (50.00%), Query Frame = 1
Query:   10 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCK---VEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDW-------------------------GASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 393
            + +R++++GK RS   +  V EY  +L +Y +   VE  +        GD KA    E  A+++     DW                         GA  + F IGG  G   ++R+ AN+++ LS M L H++A +VL+EQLYR++TILKG+ YH
Sbjct:    1 MKVRLLSIGKDRSGLYEPAVQEYAKRLGHYTRFELVEMAEASGKRLKPGDAKAA---EAEAILSKRKPQDWLVALDERGSLLDSVELSRYVGKAQTGAKDLLFIIGGDEGLDARVRDAANLTLSLSKMTLPHRLARVVLIEQLYRAFTILKGEPYH 153          
BLAST of EH406526 vs. ExPASy Swiss-Prot
Match: RLMH_THET8 (Ribosomal RNA large subunit methyltransferase H OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=rlmH PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.833e-13
Identity = 43/137 (31.39%), Postives = 75/137 (54.74%), Query Frame = 1
Query:   16 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN----PKNTGDVKAQIKDEDMAVMNIISSDD-------WGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 393
            +RV+ VG+ R    +L V+EY  +++ Y  ++ + +R      PK  G  K  + +       ++++++       W   R++F +GG  GH   +RE A++ + LS + L H++ALLVL+EQLYR  T+  G  YH
Sbjct:    3 LRVVAVGRPRLAYARLGVEEYARRMRRYAPLDLVFVRKGEELLPKAEGHRKVVLDERG----RLLTTEELYRRLLAWEGERVAFLVGGAEGHPEAVREEADLLLSLSPLTLQHELALLVLMEQLYRVLTLRAGHPYH 135          
BLAST of EH406526 vs. ExPASy Swiss-Prot
Match: RLMH_THET2 (Ribosomal RNA large subunit methyltransferase H OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=rlmH PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.833e-13
Identity = 43/137 (31.39%), Postives = 75/137 (54.74%), Query Frame = 1
Query:   16 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN----PKNTGDVKAQIKDEDMAVMNIISSDD-------WGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 393
            +RV+ VG+ R    +L V+EY  +++ Y  ++ + +R      PK  G  K  + +       ++++++       W   R++F +GG  GH   +RE A++ + LS + L H++ALLVL+EQLYR  T+  G  YH
Sbjct:    3 LRVVAVGRPRLAYARLGVEEYARRMRRYAPLDLVFVRKGEELLPKAEGHRKVVLDERG----RLLTTEELYRRLLVWEGERVAFLVGGAEGHPEAVREEADLLLSLSPLTLQHELALLVLMEQLYRVLTLRAGHPYH 135          
BLAST of EH406526 vs. ExPASy Swiss-Prot
Match: RLMH_FLAPJ (Ribosomal RNA large subunit methyltransferase H OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=rlmH PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.967e-13
Identity = 45/155 (29.03%), Postives = 75/155 (48.39%), Query Frame = 1
Query:   16 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRS---NPKNTGDVKAQIKDEDMAVMNIISSDDW-------------------------GASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 396
            I++I +GK  +  +Q ++D+Y  +L +Y K  DL++ +   N KN  + + + K+ ++ +  I  +D                           G   + F IGGPYG    + ++    I LS M  +HQ+  L  +EQLYR +TILK + YHH
Sbjct:    3 IKLIAIGKTDNKNLQTLIDDYTKRLSFYIKF-DLEIIADIKNVKNLSETQQKEKEGELILSKITPTDQLILLDENGKTFSSVAFSDQLQKKMNSGIKTLVFVIGGPYGFSDDVYKKTFGKISLSQMTFSHQMVRLFFIEQLYRGFTILKNEPYHH 156          
BLAST of EH406526 vs. ExPASy Swiss-Prot
Match: RLMH_FLAJ1 (Ribosomal RNA large subunit methyltransferase H OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=rlmH PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.188e-12
Identity = 43/155 (27.74%), Postives = 76/155 (49.03%), Query Frame = 1
Query:   16 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLR---SNPKNTGDVKAQIKDEDMAVMNIISSDDW-------------------------GASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 396
            I++I +GK  +  +Q ++D+Y  +L +Y K  DL++     N KN  + + + K+ ++ +  + ++D                           G   + F IGGPYG    + ++A   + LS M  +HQ+  L  +EQLYR +TIL+ + YHH
Sbjct:    3 IKLIAIGKTDNKSLQTLIDDYTKRLSFYIKF-DLEIIPDIKNVKNLSESQQKEKEGELILSKLSATDQLILLDENGKTFSSVGFSEELQKKMNSGVKTLVFVIGGPYGFSETIYKKAQGKVSLSLMTFSHQMVRLFFIEQLYRGFTILRNEPYHH 156          
BLAST of EH406526 vs. ExPASy Swiss-Prot
Match: RLMH_GEOSF (Ribosomal RNA large subunit methyltransferase H OS=Geobacter sp. (strain FRC-32) GN=rlmH PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.552e-12
Identity = 45/151 (29.80%), Postives = 71/151 (47.02%), Query Frame = 1
Query:   16 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--------------------PKNTGDVKAQIKDEDMAVMNII----SSDDWGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 396
            ++V+ VGK +   V+  +DEY G++  Y  ++  + R                      PKN   V    + E M+   +     ++ D G   + F IGG YG    +R +A  +I LS M   HQ+  + L+EQLYR +TI+ G+ YHH
Sbjct:    3 LKVLWVGKTQEEWVRRGIDEYAGRIGRYMSIDLAEARDEKGAAVEAMREREGERLLKLLPKNARLVLLDERGEQMSSPELARFLATNRDGGTQELVFVIGGAYGFSDSLRAKAFKTISLSRMTFTHQMVRIFLLEQLYRGFTIINGEPYHH 153          
BLAST of EH406526 vs. ExPASy Swiss-Prot
Match: RLMH_GRAFK (Ribosomal RNA large subunit methyltransferase H OS=Gramella forsetii (strain KT0803) GN=rlmH PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.648e-12
Identity = 45/159 (28.30%), Postives = 78/159 (49.06%), Query Frame = 1
Query:   10 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE-----DLQLRSNPKNTGDVKAQIKDEDMAVMNIISSD-------------------------DWGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 396
            + I+++ +GK     ++ ++  Y  +L++Y K E     DL+     KN  + + + K+ ++ +  + +SD                         + G  R+ F IGGPYG   ++ +RA+  I LS M  +HQ+  L   EQLYR++TILK + YHH
Sbjct:    1 MTIKLVCIGKTDKKELEALIKIYSDRLQHYIKFEFEIIPDLK---KTKNLDENQQKSKEGELILSGVQNSDFVVLLDENGKQFSSESFSEYIQKRMNTGLKRLIFVIGGPYGFSEEVYKRADSKISLSKMTFSHQMVRLFFTEQLYRAFTILKNEPYHH 156          
BLAST of EH406526 vs. ExPASy Swiss-Prot
Match: RLMH_GEOUR (Ribosomal RNA large subunit methyltransferase H OS=Geobacter uraniireducens (strain Rf4) GN=rlmH PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.648e-12
Identity = 45/154 (29.22%), Postives = 73/154 (47.40%), Query Frame = 1
Query:   10 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--------------------PKNT-----GDVKAQIKDEDMAVMNIISSDDWGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 396
            + +RV+ VGK +   V+  +DEY G+++ Y  +E  + +                      P+N       +   Q+   D+A   I ++ D G   ++F IGG YG     R  A  +I LS M   HQ+  + L+EQ+YR +TI+ G+ YHH
Sbjct:    1 MKMRVLWVGKTQEEWVRRGIDEYAGRIRRYTPLELAEAKEEKGAAAEAMREREGERLVKLLPRNARLILLDERGEQLSSPDLAGF-IAANRDGGVQELAFAIGGAYGFSDSFRSMAYKTIALSRMTFTHQMVRIFLLEQIYRGFTIINGEPYHH 153          
BLAST of EH406526 vs. ExPASy Swiss-Prot
Match: RLMH_CYTH3 (Ribosomal RNA large subunit methyltransferase H OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=rlmH PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.458e-12
Identity = 49/156 (31.41%), Postives = 78/156 (50.00%), Query Frame = 1
Query:   10 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNT---GDVKAQ---------IKDEDMAVM-----NIISSDDWG----------ASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 396
            + +++ T+GK     ++    +Y  +L +Y   E L++   PKNT    DV  +         ++D D  ++     N  +S ++G          A  + F IGGPYG    + +RAN  I LS M  +HQ+  L  +EQLYR+ TI+KG+ YHH
Sbjct:    1 MKLQLWTIGKTNDAYLKEGCAQYTKRLPHYLPFEYLEI-PEPKNTKLSSDVLKKEEEKLIFDRLQDSDQLILLDEKGNEFTSTEFGQYIQKKMNSVAGNLIFLIGGPYGFSDAVYKRANGKIALSKMTFSHQMVRLFALEQLYRACTIIKGEKYHH 155          
The following BLAST results are available for this feature:
BLAST of EH406526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
Y5620_ARATH7.880e-4962.66Putative RNA methyltransferase At5g10620 OS=Arabid... [more]
RLMH_MYXXD1.404e-1332.05Ribosomal RNA large subunit methyltransferase H OS... [more]
RLMH_THET81.833e-1331.39Ribosomal RNA large subunit methyltransferase H OS... [more]
RLMH_THET21.833e-1331.39Ribosomal RNA large subunit methyltransferase H OS... [more]
RLMH_FLAPJ6.967e-1329.03Ribosomal RNA large subunit methyltransferase H OS... [more]
RLMH_FLAJ11.188e-1227.74Ribosomal RNA large subunit methyltransferase H OS... [more]
RLMH_GEOSF1.552e-1229.80Ribosomal RNA large subunit methyltransferase H OS... [more]
RLMH_GRAFK2.648e-1228.30Ribosomal RNA large subunit methyltransferase H OS... [more]
RLMH_GEOUR2.648e-1229.22Ribosomal RNA large subunit methyltransferase H OS... [more]
RLMH_CYTH33.458e-1231.41Ribosomal RNA large subunit methyltransferase H OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3BC01FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406526 ID=EH406526; Name=EH406526; organism=Citrus sinensis; type=EST; length=702bp
GTGAGAGCATTGCCCATTCGTGTCATAACAGTTGGCAAAAAGAGGTCTCT
GGGTGTACAATTAGTTGTGGATGAGTACATTGGAAAGCTTAAATATTACT
GCAAAGTTGAGGATCTTCAACTCCGATCCAATCCCAAAAATACTGGTGAT
GTGAAGGCTCAGATTAAGGATGAAGACATGGCGGTGATGAACATTATCAG
CTCTGATGATTGGGGAGCTTCAAGGATATCATTTTGCATCGGTGGACCTT
ATGGCCATGGACCAAAAATGAGAGAACGCGCTAACATATCAATCAAGCTG
TCTTCAATGGTCTTAAATCATCAAATTGCATTACTTGTACTTGTGGAACA
ACTTTATAGGTCGTGGACAATTCTGAAGGGTCAAAATTACCATCATTAGG
ATGCCAATTTGGCTGTCTGCTTGAATAGTCCAATGGATGAGCGTTTCTTG
TTCGTGATGGTTAGTTGAAGAAGCACTCTGAATTTTGATTTGATGAAGTA
AACTACCAAATGGACTTGCTCCCAAACAAGCATTTGTCAACAGACTCAAT
TTGTTTCAATGGAGAGATTGAAATGATACGGTATGTTCAGTGTCCAGTAA
TTATTGCTTGTTGCAGTACTGCTTCAGTGTACTGTATAATTCTTGATCCA
ATGTACTGAGAGTCAGAGACCATTTTGAACGAAATTTGAATAGTTTGTTT
TA
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