CV885149

Overview
NameCV885149
Unique NameCV885149
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV885149_ssr124 microsatellite CV885149_ssr124:124..135. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CV885149 vs. ExPASy Swiss-Prot
Match: RL6_MESCR (60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 9.432e-30
Identity = 67/107 (62.62%), Postives = 74/107 (69.16%), Query Frame = 2
Query:    2 NGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 322
            NGVPLRRVNQ+YVI TSTKVDISGVNV+KFDDKYF K+                            DDQK+VD  L+KAIE VP+LKAYLGARFSL+AGMKPHELVF
Sbjct:  128 NGVPLRRVNQAYVIATSTKVDISGVNVEKFDDKYFGKKAEKKNKKGEGEFFEAEKKEVNVLPQEKKDDQKAVDVALLKAIEGVPELKAYLGARFSLKAGMKPHELVF 234          
BLAST of CV885149 vs. ExPASy Swiss-Prot
Match: RL63_ARATH (60S ribosomal protein L6-3 OS=Arabidopsis thaliana GN=RPL6C PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.232e-29
Identity = 68/107 (63.55%), Postives = 73/107 (68.22%), Query Frame = 2
Query:    2 NGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 322
            NGVPLRRVNQ+YVIGTSTKVDISGV +DKFDDKYF K                             DDQK+VDA LIKAIEAVP+LK YLGARFSL+ GMKPHELVF
Sbjct:  127 NGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQVKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233          
BLAST of CV885149 vs. ExPASy Swiss-Prot
Match: RL62_ARATH (60S ribosomal protein L6-2 OS=Arabidopsis thaliana GN=RPL6B PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.232e-29
Identity = 68/107 (63.55%), Postives = 73/107 (68.22%), Query Frame = 2
Query:    2 NGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 322
            NGVPLRRVNQ+YVIGTSTKVDISGV +DKFDDKYF K                             DDQK+VDA LIKAIEAVP+LK YLGARFSL+ GMKPHELVF
Sbjct:  127 NGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQGKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233          
BLAST of CV885149 vs. ExPASy Swiss-Prot
Match: RL61_ARATH (60S ribosomal protein L6-1 OS=Arabidopsis thaliana GN=RPL6A PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.779e-28
Identity = 65/107 (60.75%), Postives = 72/107 (67.29%), Query Frame = 2
Query:    2 NGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 322
            NGVPLRRVNQ+YVIGTSTK+DISGVN +KFDDKYF K                             +DQK+VDA LIK+IEAVP+LK YLGARFSL  GMKPHELVF
Sbjct:  127 NGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQEKKEDQKTVDAALIKSIEAVPELKVYLGARFSLSQGMKPHELVF 233          
BLAST of CV885149 vs. ExPASy Swiss-Prot
Match: RL6A_YEAST (60S ribosomal protein L6-A OS=Saccharomyces cerevisiae GN=RPL6A PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 3.480e-16
Identity = 51/107 (47.66%), Postives = 58/107 (54.21%), Query Frame = 2
Query:    2 NGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 322
            NGVPLRRVN  YVI TSTKV + GVNV+KF+ +YFAKE                            +DQK VD  LI  I+  P LK YL A FSL+ G KPH L F
Sbjct:   72 NGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKE--KLTKKEKKEANLFPEQQNKEIKAERVEDQKVVDKALIAEIKKTPLLKQYLSASFSLKNGDKPHMLKF 176          
BLAST of CV885149 vs. ExPASy Swiss-Prot
Match: RL6B_YEAST (60S ribosomal protein L6-B OS=Saccharomyces cerevisiae GN=RPL6B PE=1 SV=4)

HSP 1 Score: 83.5741 bits (205), Expect = 7.752e-16
Identity = 50/107 (46.73%), Postives = 58/107 (54.21%), Query Frame = 2
Query:    2 NGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 322
            NGVPLRRVN  YVI TSTKV + GVNV+KF+ +YFAKE                            +DQK VD  L+  I+  P LK YL A FSL+ G KPH L F
Sbjct:   72 NGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKE--KLTKKEKKEANLFPEQQTKEIKTERVEDQKVVDKALLAEIKKTPLLKQYLSASFSLKNGDKPHLLKF 176          
BLAST of CV885149 vs. ExPASy Swiss-Prot
Match: RL6_SCHPO (60S ribosomal protein L6 OS=Schizosaccharomyces pombe GN=rpl6 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.119e-14
Identity = 46/108 (42.59%), Postives = 61/108 (56.48%), Query Frame = 2
Query:    2 NGVPLRRVNQSYVIGTST-KVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 322
            NGVP+RRVN  YVI TS  K+D+SGV+V+KF   YFAK+                             DQK+VDA L+ AI+A+P++K YL A F+L  G +PH + F
Sbjct:   89 NGVPIRRVNHRYVIATSAPKIDVSGVSVEKFTKAYFAKQ-KRSGPVKKDEAFFAENAPKNALPAERIADQKAVDAKLLPAIKAIPNMKEYLAASFALSNGDRPHLMKF 195          
BLAST of CV885149 vs. ExPASy Swiss-Prot
Match: RL6_RAT (60S ribosomal protein L6 OS=Rattus norvegicus GN=Rpl6 PE=1 SV=5)

HSP 1 Score: 72.4034 bits (176), Expect = 1.787e-12
Identity = 45/108 (41.67%), Postives = 58/108 (53.70%), Query Frame = 2
Query:    2 NGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 322
            N VPLRR +Q +VI TSTKVDIS V + K   D YF K+                            D QK+VD+ ++  I+AVP L+ YL ++FSL  GM PH+LVF
Sbjct:  192 NRVPLRRTHQKFVIATSTKVDISKVKIPKHLTDAYFKKKPLRKPRHQEGEIFDTEKEKYEITEQRKAD-QKAVDSQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 298          
BLAST of CV885149 vs. ExPASy Swiss-Prot
Match: RL6_MOUSE (60S ribosomal protein L6 OS=Mus musculus GN=Rpl6 PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 2.334e-12
Identity = 45/108 (41.67%), Postives = 57/108 (52.78%), Query Frame = 2
Query:    2 NGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 322
            N VPLRR +Q +VI TSTKVDIS V + K   D YF K+                            D QK+VD  ++  I+AVP L+ YL ++FSL  GM PH+LVF
Sbjct:  190 NRVPLRRTHQKFVIATSTKVDISDVKIPKHLTDAYFKKKQLRKPRHQEGEIFDTEKEKYEITEQRKAD-QKAVDLQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 296          
BLAST of CV885149 vs. ExPASy Swiss-Prot
Match: RL6_PIG (60S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 5.200e-12
Identity = 42/108 (38.89%), Postives = 59/108 (54.63%), Query Frame = 2
Query:    2 NGVPLRRVNQSYVIGTSTKVDISGVNV-DKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 322
            N VPLRR +Q +VI TSTK+DISGV + +   D YF K+                            D QK+VD+ +++ I+AVP L+ YL + F+L  G+ PH+LVF
Sbjct:  178 NRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEISEQRKVD-QKAVDSQILRRIKAVPQLQGYLRSVFALTNGIYPHKLVF 284          
The following BLAST results are available for this feature:
BLAST of CV885149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RL6_MESCR9.432e-3062.6260S ribosomal protein L6 OS=Mesembryanthemum cryst... [more]
RL63_ARATH1.232e-2963.5560S ribosomal protein L6-3 OS=Arabidopsis thaliana... [more]
RL62_ARATH1.232e-2963.5560S ribosomal protein L6-2 OS=Arabidopsis thaliana... [more]
RL61_ARATH1.779e-2860.7560S ribosomal protein L6-1 OS=Arabidopsis thaliana... [more]
RL6A_YEAST3.480e-1647.6660S ribosomal protein L6-A OS=Saccharomyces cerevi... [more]
RL6B_YEAST7.752e-1646.7360S ribosomal protein L6-B OS=Saccharomyces cerevi... [more]
RL6_SCHPO1.119e-1442.5960S ribosomal protein L6 OS=Schizosaccharomyces po... [more]
RL6_RAT1.787e-1241.6760S ribosomal protein L6 OS=Rattus norvegicus GN=R... [more]
RL6_MOUSE2.334e-1241.6760S ribosomal protein L6 OS=Mus musculus GN=Rpl6 P... [more]
RL6_PIG5.200e-1238.8960S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012H12_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T3_H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885149 ID=CV885149; Name=CV885149; organism=Citrus sinensis; type=EST; length=577bp
CAATGGTGTTCCTTTACGACGTGTGAACCAGTCTTACGTGATTGGAACTT
CTACCAAAGTTGATATCTCCGGAGTGAATGTGGATAAGTTTGATGATAAG
TATTTTGCCAAGGAAGTCGAGAGGAAGAAGAAGAAAGGAGAGAATGAGTT
CTTTGAGTCAGAGAAAGAGGAGAAGAAGTCGCTTCCTCAGGAGAAGAAGG
ATGATCAGAAGTCTGTTGATGCACCATTGATCAAGGCCATTGAAGCTGTT
CCAGACTTGAAGGCTTACCTTGGTGCTAGGTTTTCCCTCAGGGCCGGCAT
GAAACCTCATGAACTTGTCTTCTGAAAACATGTTGAAACAATTTAGGATT
GCTTTGCTTTTTCCTACTTGTTATGTTTTGTTTGAAATTTATTTTAGCAG
TTGTAATCTTTGTTTCATGGGATCAGACATCTAAATTTTGGTATGATGTT
AGGCAAATGAAATGCTTTTCTTAAAGTACAATTGATTACTGATATATACT
CTGTGACCTTTCCTTTTTATGTGTTTCTGTTTAACTTCCTTTTGGTTACT
TAGATTATGGAGTGACATTTTGATAAA
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