CV885145

Overview
NameCV885145
Unique NameCV885145
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885145 vs. ExPASy Swiss-Prot
Match: SRF6_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana GN=SRF6 PE=1 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 3.245e-53
Identity = 101/128 (78.91%), Postives = 114/128 (89.06%), Query Frame = 3
Query:  471 AQFADGKVLAVKKIDSSALPSEMCDDFIEMVSNISQLHHPNIMELVGYCSEYGQHLLVYEFRKNGSLHDFLHLLDEDNKPLIWNSRVKIALGTARALEYLHEVCSLSVVHKNIKSANILLDNELNPQL 854
            A+F DGKVLAVKKIDSSALP  M DDFIEMVS I+ L HPN+ +LVGYC+E+GQHL+VYEF KNGSLHDFLHL +E++K L+WNSRVKIALGTARALEYLHEVCS S+V KNIKSANILLD+ELNP L
Sbjct:  433 AEFDDGKVLAVKKIDSSALPHGMTDDFIEMVSKIANLDHPNVTKLVGYCAEHGQHLVVYEFHKNGSLHDFLHLSEEESKALVWNSRVKIALGTARALEYLHEVCSPSIVDKNIKSANILLDSELNPHL 560          
BLAST of CV885145 vs. ExPASy Swiss-Prot
Match: SRF7_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 7 OS=Arabidopsis thaliana GN=SRF7 PE=1 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.233e-52
Identity = 99/128 (77.34%), Postives = 113/128 (88.28%), Query Frame = 3
Query:  471 AQFADGKVLAVKKIDSSALPSEMCDDFIEMVSNISQLHHPNIMELVGYCSEYGQHLLVYEFRKNGSLHDFLHLLDEDNKPLIWNSRVKIALGTARALEYLHEVCSLSVVHKNIKSANILLDNELNPQL 854
            AQF DGKVLAVKKIDSSALP++  DDF E+VS I+ L H N+ +L GYCSE+GQHL+VYEF +NGSLHDFLHL +E++KPLIWN RVKIALGTARALEYLHEVCS S+VHKNIKSANILLD+ELNP L
Sbjct:  436 AQFEDGKVLAVKKIDSSALPTDTADDFTEIVSKIAHLDHENVTKLDGYCSEHGQHLVVYEFHRNGSLHDFLHLAEEESKPLIWNPRVKIALGTARALEYLHEVCSPSIVHKNIKSANILLDSELNPHL 563          
BLAST of CV885145 vs. ExPASy Swiss-Prot
Match: SRF4_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 4 OS=Arabidopsis thaliana GN=SRF4 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.849e-41
Identity = 80/128 (62.50%), Postives = 104/128 (81.25%), Query Frame = 3
Query:  471 AQFADGKVLAVKKIDSSALPSEMCDDFIEMVSNISQLHHPNIMELVGYCSEYGQHLLVYEFRKNGSLHDFLHLLDEDNKPLIWNSRVKIALGTARALEYLHEVCSLSVVHKNIKSANILLDNELNPQL 854
            A+F DG+  AVK+IDSS L     ++F  +VS+IS +HH N+ ELVGYCSE G+++LVYE+  +GSLH FLHL D+ +KPL WN+R++IALGTA+A+EYLHE CS  +VHKNIKS+NILLDNELNP+L
Sbjct:  432 AKFQDGRKFAVKEIDSSLLGKGNPEEFSHIVSSISSIHHKNMAELVGYCSEQGRNMLVYEYFTSGSLHRFLHLSDDFSKPLTWNTRIRIALGTAKAIEYLHETCSPPLVHKNIKSSNILLDNELNPRL 559          
BLAST of CV885145 vs. ExPASy Swiss-Prot
Match: SRF8_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsis thaliana GN=SRF8 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 8.291e-41
Identity = 79/128 (61.72%), Postives = 103/128 (80.47%), Query Frame = 3
Query:  471 AQFADGKVLAVKKIDSSALPSEMCDDFIEMVSNISQLHHPNIMELVGYCSEYGQHLLVYEFRKNGSLHDFLHLLDEDNKPLIWNSRVKIALGTARALEYLHEVCSLSVVHKNIKSANILLDNELNPQL 854
            A+F +GK++A+KKID++AL  +  D+F+E VSN+S+L HPNI+ L GYC+E+GQ LLVYE+  NG+L D LH  D+ +  L WN+RVK+ALGTA+ALEYLHEVC  S+VH+N KSANILLD ELNP L
Sbjct:  412 AEFPNGKIMAIKKIDNAALSLQEEDNFLEAVSNMSRLRHPNIVPLAGYCTEHGQRLLVYEYVGNGNLDDTLHTNDDRSMNLTWNARVKVALGTAKALEYLHEVCLPSIVHRNFKSANILLDEELNPHL 539          
BLAST of CV885145 vs. ExPASy Swiss-Prot
Match: SRF5_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsis thaliana GN=SRF5 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.412e-40
Identity = 79/128 (61.72%), Postives = 103/128 (80.47%), Query Frame = 3
Query:  471 AQFADGKVLAVKKIDSSALPSEMCDDFIEMVSNISQLHHPNIMELVGYCSEYGQHLLVYEFRKNGSLHDFLHLLDEDNKPLIWNSRVKIALGTARALEYLHEVCSLSVVHKNIKSANILLDNELNPQL 854
            A+++DG+ LAVKKIDS+   S   +    +V ++S++ H NI ELVGYCSE G ++LVYE+ +NGSLH+FLHL D  +KPL WN+RV+IALGTARA+EYLHE CS SV+HKNIKS+NILLD +LNP+L
Sbjct:  421 AKYSDGRTLAVKKIDSTLFDSGKSEGITPIVMSLSKIRHQNIAELVGYCSEQGHNMLVYEYFRNGSLHEFLHLSDCFSKPLTWNTRVRIALGTARAVEYLHEACSPSVMHKNIKSSNILLDADLNPRL 548          
BLAST of CV885145 vs. ExPASy Swiss-Prot
Match: SRF3_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsis thaliana GN=SRF3 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.514e-34
Identity = 69/125 (55.20%), Postives = 92/125 (73.60%), Query Frame = 3
Query:  471 AQFADGKVLAVKKIDSSALPSEMCDDFIEMVSNISQLHHPNIMELVGYCSEYGQHLLVYEFRKNGSLHDFLHLLDEDNKPLIWNSRVKIALGTARALEYLHEVCSLSVVHKNIKSANILLDNELN 845
            A+  +GK+ AVKK+D  A   +   +FIE+V+NI  + H NI+ELVGYC+E+ Q LLVYE+  NG+L D LH  DE  K L WN+RV +ALG ARALEYLHEVC   ++H+N KSAN+LLD++L+
Sbjct:  502 ARLPNGKLFAVKKLDKRASEQQQDHEFIELVNNIDMIRHSNIVELVGYCAEHDQRLLVYEYCSNGTLQDGLHSDDEFKKKLSWNTRVSMALGAARALEYLHEVCEPPIIHRNFKSANVLLDDDLS 626          
BLAST of CV885145 vs. ExPASy Swiss-Prot
Match: SRF1_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsis thaliana GN=SRF1 PE=2 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 2.263e-30
Identity = 61/124 (49.19%), Postives = 89/124 (71.77%), Query Frame = 3
Query:  471 AQFADGKVLAVKKIDSSALPSEMCDDFIEMVSNISQLHHPNIMELVGYCSEYGQHLLVYEFRKNGSLHDFLHLLDEDNKPLIWNSRVKIALGTARALEYLHEVCSLSVVHKNIKSANILLDNEL 842
            A+   GK+ AV+K+D  +   E    F+E+V+NI ++ H NI++LVG+CSE+ Q LL++E+ +NG+LHD LH+ D     L WN RV+IAL  A+ALEYLHE+C    +H+N KSANILLD+++
Sbjct:  495 AELPGGKLFAVRKLDKKSPNHEEEGKFLELVNNIDRIRHANIVQLVGFCSEHSQRLLIHEYCRNGTLHDLLHIDDRLKIELSWNVRVRIALEAAKALEYLHEICDPPSIHRNFKSANILLDDDI 618          
BLAST of CV885145 vs. ExPASy Swiss-Prot
Match: SUB_ARATH (Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.574e-29
Identity = 61/125 (48.80%), Postives = 90/125 (72.00%), Query Frame = 3
Query:  471 AQFADGKVLAVKKIDSSALPSEMCDDFIEMVSNISQLHHPNIMELVGYCSEYGQHLLVYEFRKNGSLHDFLHLLDEDNKPLIWNSRVKIALGTARALEYLHEVCSLSVVHKNIKSANILLDNELN 845
            A+   GK LAVKK+ ++   ++   +F+ +VSN+ +L   +I+EL+GYC+E+GQ LLVYE+  NGSL D LHL  + +K L WN R+ IALG ++AL++LHEVC   VVH+N KS+ +LLD +L+
Sbjct:  514 AELRHGKFLAVKKLSNTINRTQSDGEFLNLVSNVLKLKRGHILELLGYCNEFGQRLLVYEYCPNGSLQDALHLDRKLHKKLTWNVRINIALGASKALQFLHEVCQPPVVHQNFKSSKVLLDGKLS 638          
BLAST of CV885145 vs. ExPASy Swiss-Prot
Match: PBS1_ARATH (Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.883e-25
Identity = 57/123 (46.34%), Postives = 83/123 (67.48%), Query Frame = 3
Query:  486 GKVLAVKKIDSSALPSEMCDDFIEMVSNISQLHHPNIMELVGYCSEYGQHLLVYEFRKNGSLHDFLHLLDEDNKPLIWNSRVKIALGTARALEYLHEVCSLSVVHKNIKSANILLDNELNPQL 854
            G+V+AVK++D + L      +F+  V  +S LHHPN++ L+GYC++  Q LLVYEF   GSL D LH L  D + L WN R+KIA G A+ LE+LH+  +  V++++ KS+NILLD   +P+L
Sbjct:  109 GQVVAVKQLDRNGLQGNR--EFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEALDWNMRMKIAAGAAKGLEFLHDKANPPVIYRDFKSSNILLDEGFHPKL 229          
BLAST of CV885145 vs. ExPASy Swiss-Prot
Match: SRF2_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 2 OS=Arabidopsis thaliana GN=SRF2 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.165e-24
Identity = 56/128 (43.75%), Postives = 83/128 (64.84%), Query Frame = 3
Query:  471 AQFADGKVLAVKKIDSSALPSEMCDDFIEMVSNISQLHHPNIMELVGYCSEYGQHLLVYEFRKNGSLHDFLHLLDEDNKPLIWNSRVKIALGTARALEYLHEVCSLSVVHKNIKSANILLDNELNPQL 854
            A+  DG+   V+ I  S+L     + F E++   S+L HPNI+ L+G+C E G+HLLVYE+  + SL++ +H  DE  KPL W  R++IA+G ARAL+YLH      + H ++K+ NILLD EL P++
Sbjct:  432 AKLPDGQFAVVRNIPMSSLSLHEEEQFTEVLQTASKLRHPNIVTLLGFCIENGEHLLVYEYVGHLSLYNAMH--DEVYKPLSWGLRLRIAIGVARALDYLHSSFCPPIAHSDLKATNILLDEELTPRI 557          
The following BLAST results are available for this feature:
BLAST of CV885145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 245
Match NameE-valueIdentityDescription
SRF6_ARATH3.245e-5378.91Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsi... [more]
SRF7_ARATH1.233e-5277.34Protein STRUBBELIG-RECEPTOR FAMILY 7 OS=Arabidopsi... [more]
SRF4_ARATH2.849e-4162.50Protein STRUBBELIG-RECEPTOR FAMILY 4 OS=Arabidopsi... [more]
SRF8_ARATH8.291e-4161.72Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsi... [more]
SRF5_ARATH2.412e-4061.72Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsi... [more]
SRF3_ARATH1.514e-3455.20Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsi... [more]
SRF1_ARATH2.263e-3049.19Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsi... [more]
SUB_ARATH5.574e-2948.80Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB ... [more]
PBS1_ARATH4.883e-2546.34Serine/threonine-protein kinase PBS1 OS=Arabidopsi... [more]
SRF2_ARATH3.165e-2443.75Protein STRUBBELIG-RECEPTOR FAMILY 2 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012H10_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T3_H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885145 ID=CV885145; Name=CV885145; organism=Citrus sinensis; type=EST; length=855bp
CAATTCTTAAGATTCTTACATGTTCTATTCAGTATCTCAAATGATAGAGC
TACACAACGATCCCAGCATGGCAGGTTATACCACAGTATTCATAGAACTT
ATTTCTTATTTTCAGTTCCACACACAATCTCAATAGCAAGGTCCTTCAGA
GTTTTTGTACCAAACTCTTTAGTTATCCGAAATAAACTTATACTAGCCTT
GACCATGTTGAATTCTCAGGGAATCCAGCTGAGATTTTCCCCTAAGCTCA
CGAGCATACCGGCTCCTAAAGTATTCTTCAATTCTCACTCTTCTAAACAA
AGGAGGAGTTTTTTCAGAGATCAAACTGGAGGCAGGATATACTTCACCAT
CATATCTCACTGAGTAAACTGTGGCAACGGAAAGTCTTTCCTGTACAGAG
TTTACAACTGCACGATGCTCAATGCTGCGGTATGTCCCATTGGTTATAAT
CTCCAATGTGTCTCCAATGTGCACAATTTGCCGATGGAAAGGTTCTTGCA
GTGAAGAAAATAGATTCGTCTGCCCTTCCCAGTGAAATGTGTGATGATTT
TATCGAGATGGTTTCAAACATATCCCAGCTGCATCACCCGAACATAATGG
AGCTAGTGGGTTATTGTTCAGAGTATGGACAGCACCTGCTAGTGTATGAG
TTCCGTAAAAATGGTTCACTGCACGACTTCTTGCATCTGTTGGATGAAGA
CAACAAGCCTTTGATATGGAACTCCCGCGTCAAGATTGCTTTGGGGACCG
CACGAGCACTGGAGTACCTGCATGAAGTCTGCTCACTGTCAGTTGTTCAC
AAAAATATTAAGTCGGCCAACATATTACTGGACAACGAGCTCAATCCTCA
ACTTT
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