CV885143

Overview
NameCV885143
Unique NameCV885143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RK15_ARATH (50S ribosomal protein L15, chloroplastic OS=Arabidopsis thaliana GN=RPL15 PE=1 SV=2)

HSP 1 Score: 232.646 bits (592), Expect = 1.347e-60
Identity = 115/132 (87.12%), Postives = 122/132 (92.42%), Query Frame = -1
Query:  261 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVLPGRKKWVKPSVAKNLARAEEYFAKKR 656
            EGGQ  LYRR+PKLRGIAGGM +GLPKY+PVN+KDIE AGF EGDEVSLETLK+KGLINPSGRERKLPLKILG GELS KL FKARAFST AKEKLEA+GCTLTVLPGRKKWVKPSVAKN ARA+EYFAKKR
Sbjct:  131 EGGQTALYRRLPKLRGIAGGMRSGLPKYLPVNIKDIETAGFQEGDEVSLETLKQKGLINPSGRERKLPLKILGTGELSMKLTFKARAFSTQAKEKLEASGCTLTVLPGRKKWVKPSVAKNQARADEYFAKKR 262          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RK15_PEA (50S ribosomal protein L15, chloroplastic (Fragment) OS=Pisum sativum GN=RPL15 PE=1 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 4.332e-59
Identity = 115/132 (87.12%), Postives = 120/132 (90.91%), Query Frame = -1
Query:  261 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVLPGRKKWVKPSVAKNLARAEEYFAKKR 656
            EGGQMPLYRR+PKLRGIAGGMHAGLPKYV VNL DIE AGF +G+EVSLETLK K +INPSGRERKLPLKIL DGELSKKL  KA AFSTSAKEKLE AGC+L VLPGRKKWVKPSVAKNLARAEEYFAKKR
Sbjct:  116 EGGQMPLYRRLPKLRGIAGGMHAGLPKYVNVNLTDIENAGFQDGEEVSLETLKAKRVINPSGRERKLPLKILADGELSKKLTIKAGAFSTSAKEKLEYAGCSLIVLPGRKKWVKPSVAKNLARAEEYFAKKR 247          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_RUBXD (50S ribosomal protein L15 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=rplO PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.010e-15
Identity = 50/108 (46.30%), Postives = 70/108 (64.81%), Query Frame = -1
Query:  339 EGGQMPLYRRIPKLRGIAGGMHAGL-PK-YVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 656
            EGGQMPL RR+P+L+G A G H    PK Y PVN+ ++ A   +EGD + L+ L+  GLI    ++    +KILGDGE+ + +  +A AFS +A+EK+EAAG    VL
Sbjct:   51 EGGQMPLQRRLPRLKGEARGRHTPAHPKVYDPVNVGELAA---VEGDTIGLDELRAAGLIR---KKADTLVKILGDGEIDRPVTVRAHAFSRAAREKIEAAGGRAEVL 152          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_CORDI (50S ribosomal protein L15 OS=Corynebacterium diphtheriae GN=rplO PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.723e-15
Identity = 48/104 (46.15%), Postives = 66/104 (63.46%), Query Frame = -1
Query:  345 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLT 656
            EGGQMPL+ R+PKL+G           Y  VN+ D+E A F +G E+++  +  KGL+ P     K P+K+LG+GE+S KLN  A  FS SA EK+EAAG ++T
Sbjct:   52 EGGQMPLHMRLPKLKGFKNPAKV---YYQVVNVSDLEKA-FPQGGEIAVADIVAKGLVRP-----KQPVKVLGNGEISVKLNVTATKFSKSAVEKIEAAGGSVT 146          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_CORJK (50S ribosomal protein L15 OS=Corynebacterium jeikeium (strain K411) GN=rplO PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.240e-14
Identity = 46/104 (44.23%), Postives = 63/104 (60.58%), Query Frame = -1
Query:  345 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLT 656
            EGGQMPL+ R+PKL+G           Y  VN+ D+E A F  G +V++  +   GL       +  P+K+LG+GE+S KLN  A  FS SAK+K+EAAG T+T
Sbjct:   52 EGGQMPLHMRLPKLKGFKNPAKV---TYQVVNVSDLEKA-FSNGGDVTVADIVAAGLAR-----KNQPVKVLGNGEISVKLNVTANKFSGSAKQKIEAAGGTVT 146          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_AQUAE (50S ribosomal protein L15 OS=Aquifex aeolicus GN=rplO PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.235e-13
Identity = 49/100 (49.00%), Postives = 60/100 (60.00%), Query Frame = -1
Query:  357 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 656
            EGGQ PLY RIPK     G  +    +Y PVN+  I+   F +G E++ E L  KGL +   R     +KILGDGEL+KK   KA AFS SAKEK+E AG
Sbjct:   53 EGGQTPLYMRIPK----RGFKNPTRKEYTPVNVGVIDKL-FEDGMEITPEVLASKGLCDEKDR-----VKILGDGELTKKFVIKAHAFSKSAKEKIEKAG 142          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_CORA7 (50S ribosomal protein L15 OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=rplO PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.613e-13
Identity = 44/104 (42.31%), Postives = 63/104 (60.58%), Query Frame = -1
Query:  345 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLT 656
            EGGQMP++ R+PKL+G     H    +Y  VN+ D+ A  F  G +V++  +   GL+      +  P+K+LG+GE++ KLN  A  FS SA EK+EAAG T T
Sbjct:   52 EGGQMPIHMRLPKLKGFKNPNHV---EYQVVNVADL-AEAFANGGDVTVADIVAAGLVR-----KNQPVKVLGNGEINVKLNVTADKFSKSAVEKIEAAGGTAT 146          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_THEFY (50S ribosomal protein L15 OS=Thermobifida fusca (strain YX) GN=rplO PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.751e-13
Identity = 46/104 (44.23%), Postives = 63/104 (60.58%), Query Frame = -1
Query:  345 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLT 656
            EGGQMPL RRIPKL+G +      +  Y  VNL  +    + EG EV++E L  KG +      +  P+K+LG GE+S  +   A AFS+SAKEK+ AAG ++T
Sbjct:   52 EGGQMPLIRRIPKLKGFSNAKFKTV--YQVVNLDKLSKL-YPEGGEVTIEDLVAKGAVR-----KNQPVKVLGTGEISVPVRVSANAFSSSAKEKILAAGGSVT 147          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_SYNP6 (50S ribosomal protein L15 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplO PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.751e-13
Identity = 48/109 (44.04%), Postives = 67/109 (61.47%), Query Frame = -1
Query:  339 EGGQMPLYRRIPKLRGIAGGMHAGLPK---YVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 656
            EGGQMPLYRR+PKL+      H  L     Y  VN+  +  AG   G EV+LE+L   G++  +      PLKILGDGELS  L+  A AF+ +A++K+EAAG ++ ++
Sbjct:   51 EGGQMPLYRRVPKLK------HFPLINRKFYTVVNVGAL--AGLAAGTEVTLESLMAVGIVTQNDG----PLKILGDGELSVSLSVSAAAFTATAQQKIEAAGGSIALV 147          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_SYNE7 (50S ribosomal protein L15 OS=Synechococcus elongatus (strain PCC 7942) GN=rplO PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.751e-13
Identity = 48/109 (44.04%), Postives = 67/109 (61.47%), Query Frame = -1
Query:  339 EGGQMPLYRRIPKLRGIAGGMHAGLPK---YVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 656
            EGGQMPLYRR+PKL+      H  L     Y  VN+  +  AG   G EV+LE+L   G++  +      PLKILGDGELS  L+  A AF+ +A++K+EAAG ++ ++
Sbjct:   51 EGGQMPLYRRVPKLK------HFPLINRKFYTVVNVGAL--AGLAAGTEVTLESLMAVGIVTQNDG----PLKILGDGELSVSLSVSAAAFTATAQQKIEAAGGSIALV 147          
The following BLAST results are available for this feature:
BLAST of CV885143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
RK15_ARATH1.347e-6087.1250S ribosomal protein L15, chloroplastic OS=Arabid... [more]
RK15_PEA4.332e-5987.1250S ribosomal protein L15, chloroplastic (Fragment... [more]
RL15_RUBXD1.010e-1546.3050S ribosomal protein L15 OS=Rubrobacter xylanophi... [more]
RL15_CORDI1.723e-1546.1550S ribosomal protein L15 OS=Corynebacterium dipht... [more]
RL15_CORJK7.240e-1444.2350S ribosomal protein L15 OS=Corynebacterium jeike... [more]
RL15_AQUAE1.235e-1349.0050S ribosomal protein L15 OS=Aquifex aeolicus GN=r... [more]
RL15_CORA71.613e-1342.3150S ribosomal protein L15 OS=Corynebacterium aurim... [more]
RL15_THEFY2.751e-1344.2350S ribosomal protein L15 OS=Thermobifida fusca (s... [more]
RL15_SYNP62.751e-1344.0450S ribosomal protein L15 OS=Synechococcus sp. (st... [more]
RL15_SYNE72.751e-1344.0450S ribosomal protein L15 OS=Synechococcus elongat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012H09_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T3_H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885143 ID=CV885143; Name=CV885143; organism=Citrus sinensis; type=EST; length=656bp
CTGAGATTTGGCTTTCCAGCTAAGTAACATGAGAATCAGAACATTGAGAG
TTTAGCTGAATTTTTAAAAGGGAGGGGATACAAAGAAGAGACAAATTCCA
GAAATTACAGCTATAGACATCCTCCTCTCATTTCGCTACCCCGAAAACCT
AAAACCAGAGAAAAAGAATCGAAGACAATTCAATGGCTCTACTTAGTTAC
AGTGAGTGAAAAAAACCAAGTGGTTCAAGCTGAAGTTGAATCGGATGCAG
CTGCAGCAGCTCTCTTCTTGGCGAAGTATTCTTCAGCTCGTGCAAGGTTC
TTAGCTACTGATGGTTTCACCCACTTCTTTCGGCCAGGTAAGACAGTGAG
GGTACAGCCTGCAGCTTCAAGCTTCTCCTTTGCTGATGTAGAGAAGGCAC
GAGCCTTGAAGTTCAGCTTCTTGCTTAATTCTCCATCACCAAGAATCTTT
AAAGGCAGTTTCCTTTCTCTTCCTGAGGGATTGATCAAGCCCTTCTTCTT
CAAAGTCTCTAGTGAGACTTCATCCCCCTCTAGAAAACCAGCTGCTTCTA
TGTCTTTCAAGTTAACAGGGACATACTTAGGTAACCCAGCATGCATACCT
CCGGCAATCCCACGGAGCTTAGGAATTCGACGATAAAGAGGCATTTGACC
ACCTTC
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