CV885118

Overview
NameCV885118
Unique NameCV885118
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4944 contig Csv1_Contig4944:248..1035. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CV885118 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.435e-28
Identity = 66/121 (54.55%), Postives = 80/121 (66.12%), Query Frame = -1 
Query:  394 MLEKLWDDVVAGPQPDRGLGRLRKITTTPLAVKEGGEAESSSGKFQRSLSMXXXXXXXXXXXXXXXXXXARKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYDWLYSGETRSKHH 756
            +L+KLWDD+VAGPQP+RGLG LRK+   PL +K+ GE+           S                   ARKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYDW+YSGETRSKHH
Sbjct:    3 LLDKLWDDIVAGPQPERGLGMLRKVPQ-PLNLKDEGES-----------SKITMPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDWMYSGETRSKHH 110
The following BLAST results are available for this feature:
BLAST of CV885118 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN1.435e-2854.55Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012G05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T7_G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885118 ID=CV885118; Name=CV885118; organism=Citrus sinensis; type=EST; length=789bp
TTATTAATAATAAAACATATATGCTCATCACGACCGTCCACGAAGGGATG
ATCTTGGCTCTTACAAAATGACAATCAAAAACATGTCCTAAACCCAAAAA
CCAGCAACCTTTCATCTCCGCCCACAGCTTAGCAATCCTCACATCACATA
CAATTATTAAATTATATGATATAAAAACATCACAGTCTTTAGTTTACTTT
TAGTCAGCAGCATTTTAAAACCAAACTTTAGATAGGAAGGACACGTAATA
CAAATAGCATTAACAAAACGACAAGGACACGTTGCGAAATCCAAAACGAA
ACGACACTATCTACAGACTACAGGCAACTCATCCGGTGAGTTGGTGACCC
ATCACATTCATTTACATCGCTGGAGCGTATCATCCACTCAGTGATGATGC
TTGCTCCTAGTCTCCCCACTGTAAAGCCAGTCATAAACAGTGGGAGAGTT
AGGATGTGTGGGCTTGTCAAAGACCTCTGCACCGATACCCCTAGTAGCAA
GGTTGCTACCGGGGTGAAACACGCTCCTCCACACGTTGTCCTTACGCGCC
GACAGCGGCGTCGTCGGCGTCACTGGCGTCGACGGTGCCCCTGGACTCGC
TGGCATTGACAGAGACCTCTGGAACTTGCCCGACGACGACTCCGCCTCAC
CACCCTCTTTGACTGCTAAGGGTGTTGTGGTGATTTTCCTCAGCCTGCCA
AGGCCACGATCAGGCTGAGGCCCTGCCACAACATCGTCCCAAAGCTTCTC
TAGCATCTTTAAATTTACAATTTAGCTGCTAGTTTCCCT
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