CV885114

Overview
NameCV885114
Unique NameCV885114
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length881
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV885114_ssr55 microsatellite CV885114_ssr55:55..69. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11195 contig Csv1_Contig11195:460..1340. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV885114 vs. ExPASy Swiss-Prot
Match: HMT3_ARATH (Homocysteine S-methyltransferase 3 OS=Arabidopsis thaliana GN=HMT3 PE=1 SV=2)

HSP 1 Score: 328.561 bits (841), Expect = 2.961e-89
Identity = 159/237 (67.09%), Postives = 191/237 (80.59%), Query Frame = -2
Query:  170 IACEAREIYYDRCMKDSCDFTGSGRISSHPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNXXXXXXXXXXXXXEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTAPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAISRVLSNKSLPSA 880
            I  EAREI+Y+RC K S DF  +G+ S  P+LVAASVGSYGAYLADGSEYSG YGD+VS ETLK+FHRRRV ILA SGADLIAFETIPN             E I IPAWFSF SKDG++V  GDS++ECA +ADSC+ VVA+GINCTAPR+IH LI+S+R++T KP+++YPNSGE Y+   KKW++S G  +EDFVSY+ KWRDAGASLFGGCCRTTPNTI+AI++VLS++  PSA
Sbjct:  105 ITYEAREIFYNRCTKGSWDFAYAGKASRRPILVAASVGSYGAYLADGSEYSGIYGDSVSKETLKDFHRRRVQILAKSGADLIAFETIPNKLEAEAYADLLEEEDIDIPAWFSFTSKDGVSVPRGDSVVECAKVADSCKNVVAIGINCTAPRYIHALIISLRQMTRKPIVVYPNSGEVYDGLNKKWIKSEGESEEDFVSYVSKWRDAGASLFGGCCRTTPNTIRAIAKVLSDE--PSA 339          
BLAST of CV885114 vs. ExPASy Swiss-Prot
Match: HMT2_ARATH (Homocysteine S-methyltransferase 2 OS=Arabidopsis thaliana GN=HMT-2 PE=1 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 1.090e-83
Identity = 150/232 (64.66%), Postives = 178/232 (76.72%), Query Frame = -2
Query:  185 IACEAREIYYDRCMKDSCDFTGSGRISSHPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNXXXXXXXXXXXXXEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTAPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAISRVLSNK 880
            IA EAR  YYD+C   S        +   P+LVAASVGSYGAYLADGSEYSG YGD+++LE LK+FHRRR+ +LA SGADLIAFETIPN               + IP WFSFNSKDG+NVVSGDSI EC SIA++CE+VVAVGINCT PRFI GL+L + KVTSKP+++YPNSGE+Y+A+ K+WVE+TGV DEDFVSY+ KW DAG SL GGCCRTTP TI+AI + L N+
Sbjct:  101 IATEARNSYYDKCGTSSS--MDDKILKKRPILVAASVGSYGAYLADGSEYSGIYGDSITLEKLKDFHRRRLQVLAESGADLIAFETIPNKIEAQAFADLLEEGDVKIPGWFSFNSKDGVNVVSGDSIKECISIAENCEKVVAVGINCTPPRFIEGLVLEIEKVTSKPILVYPNSGESYDADRKEWVENTGVGDEDFVSYVEKWMDAGVSLLGGCCRTTPTTIRAIHKRLVNR 330          
BLAST of CV885114 vs. ExPASy Swiss-Prot
Match: SMTA_ASTBI (Selenocysteine methyltransferase OS=Astragalus bisulcatus GN=SMTA PE=1 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 3.876e-81
Identity = 146/237 (61.60%), Postives = 182/237 (76.79%), Query Frame = -2
Query:  173 IACEAREIYYDRCMKDSCDFTGSGRI-SSHPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNXXXXXXXXXXXXXEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTAPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAISRVLSNKSLPS 880
            IA EAR++YY RC + S D     RI    P+L+A SVGSYGAYLADGSE+SG+YGDA+  ETLK+FHRR+V ILA+SG DL+AFE +PN             E I  PAWF+F SKDG NVVSGDSI EC SIA+SC++VVAVGINCT PRFIH LIL ++KVT+KP++IYPNSGETY+A  K+W +++GV DEDFVSY+ KW ++GASL GGCCRTTP+TI+ I ++LS+   P+
Sbjct:   98 IAREARDLYYQRCAESSSDNGDDSRILKQRPILIAGSVGSYGAYLADGSEFSGNYGDAIKSETLKDFHRRKVQILADSGVDLLAFEAVPNKLEAQAYADLLEEENIITPAWFAFTSKDGNNVVSGDSIEECGSIAESCDKVVAVGINCTPPRFIHDLILLLKKVTAKPIVIYPNSGETYDAIRKEWGQNSGVTDEDFVSYVDKWCESGASLVGGCCRTTPDTIRGIYKILSSGQSPT 334          
BLAST of CV885114 vs. ExPASy Swiss-Prot
Match: HMT2_MAIZE (Homocysteine S-methyltransferase 2 OS=Zea mays GN=HMT-2 PE=2 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 2.127e-79
Identity = 148/233 (63.52%), Postives = 174/233 (74.68%), Query Frame = -2
Query:  182 IACEAREIYYDRCMKDSCDFTGSGRISSHPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNXXXXXXXXXXXXXEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTAPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAISRVLSNKS 880
            IA EARE++    ++ S           HPVLVAAS+GSYGAYLADGSEYSGDYG+A + E LK+FHRRR+ +LA +G DLIAFETIPN               I IPAWFSFNSKDG+++VSGDS++EC +IAD C +V AVGINCT PRFIHGLILS+RKVT KP++IYPNSGE Y+ E K+WVESTGV D DFVSY+ +W   GA L GGCCRTTPNTI+AI R L NKS
Sbjct:  105 IALEAREMFLKEHLEKSTPI-------QHPVLVAASLGSYGAYLADGSEYSGDYGEAGTKEFLKDFHRRRLQVLAEAGPDLIAFETIPNKLEAEAYVELLEECNINIPAWFSFNSKDGVHIVSGDSLIECTTIADKCAKVGAVGINCTPPRFIHGLILSIRKVTDKPILIYPNSGERYDGEKKEWVESTGVSDGDFVSYVNEWCKDGAVLIGGCCRTTPNTIRAIHRTL-NKS 329          
BLAST of CV885114 vs. ExPASy Swiss-Prot
Match: HMT3_MAIZE (Homocysteine S-methyltransferase 3 OS=Zea mays GN=HMT-3 PE=2 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 1.378e-78
Identity = 143/230 (62.17%), Postives = 173/230 (75.22%), Query Frame = -2
Query:  191 IACEAREIYYDRCMKDSCDFTGSGRISSHPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNXXXXXXXXXXXXXEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTAPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAISRVLS 880
            IA EARE++    ++ S           HP+LVAA++GSYGAYLADGSEYSGDYG+A + E LK+FHRRR+ +LA +G DLIAFETIPN               I IP+W SFNSKDG++VVSGDS++ECA+IAD C +V AVGINCT PRFIHGLILS+RKVT KP++IYPNSGE Y+ E K+WVESTGV D DFVSY+ +W   GA+L GGCCRTTPNTI+AI R L+
Sbjct:  105 IALEAREMFLKEHLEKSTPI-------QHPILVAAALGSYGAYLADGSEYSGDYGEAGTKEFLKDFHRRRLQVLAEAGPDLIAFETIPNKLEAQAYVELLEECNINIPSWLSFNSKDGVHVVSGDSLIECATIADKCAKVGAVGINCTPPRFIHGLILSIRKVTDKPILIYPNSGERYDGEKKEWVESTGVSDGDFVSYVNEWCKDGAALIGGCCRTTPNTIRAIHRTLN 327          
BLAST of CV885114 vs. ExPASy Swiss-Prot
Match: HMT4_MAIZE (Homocysteine S-methyltransferase 4 OS=Zea mays GN=HMT-4 PE=2 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 2.277e-73
Identity = 136/230 (59.13%), Postives = 168/230 (73.04%), Query Frame = -2
Query:  194 IACEAREIYYDRCMKDSCDFTGSGRISSHPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNXXXXXXXXXXXXXEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTAPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVR-DEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAISRVL 880
            +A EAR ++       + +   S R    P LVAASVGSYGAY ADGSEYSGDYG +++ E LK FHRRR+ +LA +G DLIAFETIPN              GI IPAWFSF SKDG+N  SGD I ECA++ADSC +V AVG+NCTAPRFIHGLILS++KVTSKP+++YPNSGETY AE  +WV+S G    +DFVS +G+WR AGA+L GGCCRT+P T++AI+R +
Sbjct:  106 VAQEARRVF-------AAEGDRSSRRGRPPALVAASVGSYGAYRADGSEYSGDYGKSMTKEDLKNFHRRRLQVLAGAGPDLIAFETIPNKLEAQVYAELLEENGIRIPAWFSFTSKDGVNAASGDPINECAAVADSCPRVDAVGVNCTAPRFIHGLILSIKKVTSKPIVVYPNSGETYVAETNEWVDSDGATGTDDFVSRVGEWRRAGAALIGGCCRTSPATVRAIARAV 328          
BLAST of CV885114 vs. ExPASy Swiss-Prot
Match: HMT1_ARATH (Homocysteine S-methyltransferase 1 OS=Arabidopsis thaliana GN=HMT-1 PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 5.636e-56
Identity = 111/232 (47.84%), Postives = 145/232 (62.50%), Query Frame = -2
Query:  185 IACEAREIYYDRCMKDSCDFTGSGRISSHPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNXXXXXXXXXXXXXEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTAPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAISRVLSNK 880
            +A EAR+ ++++  K S         S +  LVAAS+GSYGAYLADGSEYSG YG+ VSL+ LK+FHRRR+ +L  +G DL+AFETIPN             E + IPAW  F S DG    SG+S  EC    +    + AVGINC  P+FI  LI    K+T K +++YPNSGE ++ + K+W+ S    D++F  +  KWRD GA L GGCCRTTP+TI AISR L  +
Sbjct:  102 LAVEARDRFWEKVSKVSGH-------SYNRALVAASIGSYGAYLADGSEYSGHYGENVSLDKLKDFHRRRLQVLVEAGPDLLAFETIPNKLEAQACVELLEEEKVQIPAWICFTSVDGEKAPSGESFEECLEPLNKSNNIYAVGINCAPPQFIENLIRKFAKLTKKAIVVYPNSGEVWDGKAKQWLPSQCFGDDEFEMFATKWRDLGAKLIGGCCRTTPSTINAISRDLKRR 326          
BLAST of CV885114 vs. ExPASy Swiss-Prot
Match: HMT1_MAIZE (Homocysteine S-methyltransferase 1 OS=Zea mays GN=HMT-1 PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 2.142e-55
Identity = 105/233 (45.06%), Postives = 152/233 (65.24%), Query Frame = -2
Query:  182 IACEAREIYYDRCMKDSCDFTGSGRISSHPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNXXXXXXXXXXXXXEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTAPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAISRVLSNKS 880
            +A EAR+ ++   ++ S       +   +  LVAAS+GSYGAYLADGSEYSG YG  ++ E LK+FHRRR+ +LA++G DLIAFE IPN             E + IP+W  F+S DG N+ SG+S  +C  I ++ E+V  VG+NCT P+FI G+I   RK T K + +YPNSGE ++   K+W+    +  + F +   +W++AGASL GGCCRTTP+TI+A+S++L  ++
Sbjct:   96 LANEARDEFWKSTLRKS-------KPIYNRALVAASIGSYGAYLADGSEYSGSYGADITAEKLKDFHRRRLQVLASAGPDLIAFEAIPNQMEAQALVELLEEEKVQIPSWICFSSVDGKNLCSGESFADCLKILNASEKVAVVGVNCTPPQFIEGIICEFRKQTKKAIAVYPNSGEVWDGRAKRWLPVECLGHKSFDALAKRWQEAGASLIGGCCRTTPSTIRAVSKILKGRT 321          
BLAST of CV885114 vs. ExPASy Swiss-Prot
Match: HMT_BACSU (Homocysteine S-methyltransferase ybgG OS=Bacillus subtilis GN=ybgG PE=4 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.647e-39
Identity = 93/226 (41.15%), Postives = 128/226 (56.64%), Query Frame = -2
Query:  203 IACEAREIYYDRCMKDSCDFTGSGRISSHPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNXXXXXXXXXXXXXEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTAPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAIS 880
            IA EAR+ ++              R++    ++AAS+G YGAYLADGSEY G+Y  A+S + L EFHR R+  L  +GAD++A ETIP                 T  AW SF++KDG+++  G    +CAS  D   Q+ A+GINCT  + I  LI  ++K TSKP+I+YPNSGE Y+ E K W  +     E + +    W + GA L GGCCRT P  I+ I+
Sbjct:   95 IAAEARDEFWS---------LEENRLNRPKPIIAASIGPYGAYLADGSEYRGNY--AISEDELIEFHRPRMKALIEAGADVLACETIPCLTEAKAIVRLLKEFPETY-AWISFSAKDGLHISDGTPAADCASWLDEHRQIAALGINCTPLQHIPSLIEELKKNTSKPIIVYPNSGEQYDPETKTW--NGAACAESYGASARTWHEKGARLIGGCCRTKPENIQEIA 306          
BLAST of CV885114 vs. ExPASy Swiss-Prot
Match: MMUM_ECOLI (Homocysteine S-methyltransferase OS=Escherichia coli (strain K12) GN=mmuM PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 1.034e-33
Identity = 82/195 (42.05%), Postives = 108/195 (55.38%), Query Frame = -2
Query:  206 VLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNXXXXXXXXXXXXXEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTAPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAI 790
            +LVA SVG YGAYLADGSEY GDY    S+E  + FHR RV  L ++GADL+A ET+PN                   AWFSF  +D  ++  G  + +  ++     QVVA+GINC A       +  +  +T  P+++YPNSGE Y+A  K W    G        Y+ +W+ AGA L GGCCRTTP  I A+
Sbjct:  116 LLVAGSVGPYGAYLADGSEYRGDYH--CSVEAFQAFHRPRVEALLDAGADLLACETLPNFSEIEALAELLTAYP-RARAWFSFTLRDSEHLSDGTPLRDVVALLAGYPQVVALGINCIALENTTAALQHLHGLTVLPLVVYPNSGEHYDAVSKTW-HHHGEHCAQLADYLPQWQAAGARLIGGCCRTTPADIAAL 306          
The following BLAST results are available for this feature:
BLAST of CV885114 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
HMT3_ARATH2.961e-8967.09Homocysteine S-methyltransferase 3 OS=Arabidopsis ... [more]
HMT2_ARATH1.090e-8364.66Homocysteine S-methyltransferase 2 OS=Arabidopsis ... [more]
SMTA_ASTBI3.876e-8161.60Selenocysteine methyltransferase OS=Astragalus bis... [more]
HMT2_MAIZE2.127e-7963.52Homocysteine S-methyltransferase 2 OS=Zea mays GN=... [more]
HMT3_MAIZE1.378e-7862.17Homocysteine S-methyltransferase 3 OS=Zea mays GN=... [more]
HMT4_MAIZE2.277e-7359.13Homocysteine S-methyltransferase 4 OS=Zea mays GN=... [more]
HMT1_ARATH5.636e-5647.84Homocysteine S-methyltransferase 1 OS=Arabidopsis ... [more]
HMT1_MAIZE2.142e-5545.06Homocysteine S-methyltransferase 1 OS=Zea mays GN=... [more]
HMT_BACSU1.647e-3941.15Homocysteine S-methyltransferase ybgG OS=Bacillus ... [more]
MMUM_ECOLI1.034e-3342.05Homocysteine S-methyltransferase OS=Escherichia co... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012G01_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T7_G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885114 ID=CV885114; Name=CV885114; organism=Citrus sinensis; type=EST; length=881bp
TTTTTAAGCCAGGAGAAATTTTATTCATATTATGCGGTACATTGAGAACG
TAATCATTACATTACATTATACTGCCCACTTAGGACTTGAAAGACCTGAA
AAGGGAAAATTTCTGATTTTAACTATCTCCTCCGCAACTCATTACAATCT
ACATCTGAATGTTCAAATTTGCGGATGGCAAAGATTTGTTGGATAGAACT
CTGGATATGGCTTTGATTGTATTTGGTGTAGTCCTGCAGCATCCACCAAA
TAAAGAAGCCCCCGCATCACGCCACTTACCGATGTATGAGACAAAGTCCT
CATCTCTTACTCCAGTTGATTCCACCCACTTCTTGAGCTCAGCATTATAG
GTCTCGCCACTGTTTGGATATATGATTACAGGTTTACTAGTTACCTTTCT
AACAGAGAGTATGAGTCCATGGATAAATCGAGGAGCTGTACAGTTAATTC
CAACAGCAACAACTTGCTCGCATGAATCTGCAATTGAGGCACACTCTAAT
ATAGAATCACCACTAACCACATTAATTCCATCCTTAGAATTGAAAGAAAA
CCATGCTGGAATAGTTATTCCTTCTTCCTCAAGAAGCTCAGCATAGGCCT
TGGCTTCCAGCTTATTCGGAATGGTTTCAAATGCAATTAGATCAGCGCCT
GAATTGGCTAAAATCAGTACTCTCCTCCTATGGAACTCCTTCAATGTTTC
CAGAGAAACTGCATCGCCATAGTCCCCACTATATTCAGACCCATCAGCCA
AATAAGCCCCATAACTGCCTACAGAAGCAGCAACTAAAACTGGATGACTT
GAGATCCTTCCACTTCCTGTGAAGTCACAAGAATCTTTCATACATCTGTC
ATAATAGATTTCGCGTGCCTCACATGCAATT
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