CV885113

Overview
NameCV885113
Unique NameCV885113
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11195 contig Csv1_Contig11195:203..975. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV885113 vs. ExPASy Swiss-Prot
Match: HMT3_ARATH (Homocysteine S-methyltransferase 3 OS=Arabidopsis thaliana GN=HMT3 PE=1 SV=2)

HSP 1 Score: 380.563 bits (976), Expect = 5.289e-105
Identity = 183/257 (71.21%), Postives = 214/257 (83.27%), Query Frame = 1
Query:    1 KCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSCDFTRSGRISSHPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHKKRVLILANSGADLIAFETIPNXXXXXXXXXXXXXXGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTAPRFIHGLILSVRKVTSKPVIIY 771
            KCGGY+VVDGGFATEL+RHGAD+NDPLWSAKCL++SPHLV KVHLDYL++GANIIITASYQATIQGF AKG S  EAE LLRRSVEI  EAREI+Y+RC K S DF  +G+ S  P+LVAASVGSYGAYLADGSEYSG YGD+VS ETLK+FH++RV ILA SGADLIAFETIPN               I IPAWFSF SKDG++V  GDS++ECA +ADSC+ VVA+GINCTAPR+IH LI+S+R++T KP+++Y
Sbjct:   19 KCGGYAVVDGGFATELQRHGADINDPLWSAKCLITSPHLVTKVHLDYLESGANIIITASYQATIQGFVAKGLSVGEAENLLRRSVEITYEAREIFYNRCTKGSWDFAYAGKASRRPILVAASVGSYGAYLADGSEYSGIYGDSVSKETLKDFHRRRVQILAKSGADLIAFETIPNKLEAEAYADLLEEEDIDIPAWFSFTSKDGVSVPRGDSVVECAKVADSCKNVVAIGINCTAPRYIHALIISLRQMTRKPIVVY 275          
BLAST of CV885113 vs. ExPASy Swiss-Prot
Match: HMT2_ARATH (Homocysteine S-methyltransferase 2 OS=Arabidopsis thaliana GN=HMT-2 PE=1 SV=1)

HSP 1 Score: 356.681 bits (914), Expect = 8.179e-98
Identity = 173/255 (67.84%), Postives = 206/255 (80.78%), Query Frame = 1
Query:    7 GGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSCDFTRSGRISSHPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHKKRVLILANSGADLIAFETIPNXXXXXXXXXXXXXXGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTAPRFIHGLILSVRKVTSKPVIIY 771
            GGY+V+DGG ATE ERHGADLNDPLWSAKCLV+SPHL+  VHLDYL+AGA+II +ASYQATIQGFEAKGFS EE+E+LL++SVEIA EAR  YYD+C   S    +   +   P+LVAASVGSYGAYLADGSEYSG YGD+++LE LK+FH++R+ +LA SGADLIAFETIPN               + IP WFSFNSKDG+NVVSGDSI EC SIA++CE+VVAVGINCT PRFI GL+L + KVTSKP+++Y
Sbjct:   17 GGYAVIDGGLATEFERHGADLNDPLWSAKCLVTSPHLIHTVHLDYLEAGADIISSASYQATIQGFEAKGFSREESESLLKKSVEIATEARNSYYDKCGTSSSMDDKI--LKKRPILVAASVGSYGAYLADGSEYSGIYGDSITLEKLKDFHRRRLQVLAESGADLIAFETIPNKIEAQAFADLLEEGDVKIPGWFSFNSKDGVNVVSGDSIKECISIAENCEKVVAVGINCTPPRFIEGLVLEIEKVTSKPILVY 269          
BLAST of CV885113 vs. ExPASy Swiss-Prot
Match: SMTA_ASTBI (Selenocysteine methyltransferase OS=Astragalus bisulcatus GN=SMTA PE=1 SV=1)

HSP 1 Score: 346.665 bits (888), Expect = 8.464e-95
Identity = 170/258 (65.89%), Postives = 204/258 (79.07%), Query Frame = 1
Query:    1 KCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSCDFTRSGRI-SSHPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHKKRVLILANSGADLIAFETIPNXXXXXXXXXXXXXXGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTAPRFIHGLILSVRKVTSKPVIIY 771
            + G  +V+ GG  TEL+RHGADLNDPLWSAKCL+S PHL+R+VHLDYL+ GA+IIITASYQATIQGF+AKGFS EE EALLRRSVEIA EAR++YY RC + S D     RI    P+L+A SVGSYGAYLADGSE+SG+YGDA+  ETLK+FH+++V ILA+SG DL+AFE +PN               I  PAWF+F SKDG NVVSGDSI EC SIA+SC++VVAVGINCT PRFIH LIL ++KVT+KP++IY
Sbjct:   12 QAGRAAVIAGGLGTELQRHGADLNDPLWSAKCLLSCPHLIRQVHLDYLENGADIIITASYQATIQGFKAKGFSDEEGEALLRRSVEIAREARDLYYQRCAESSSDNGDDSRILKQRPILIAGSVGSYGAYLADGSEFSGNYGDAIKSETLKDFHRRKVQILADSGVDLLAFEAVPNKLEAQAYADLLEEENIITPAWFAFTSKDGNNVVSGDSIEECGSIAESCDKVVAVGINCTPPRFIHDLILLLKKVTAKPIVIY 269          
BLAST of CV885113 vs. ExPASy Swiss-Prot
Match: HMT2_MAIZE (Homocysteine S-methyltransferase 2 OS=Zea mays GN=HMT-2 PE=2 SV=1)

HSP 1 Score: 344.354 bits (882), Expect = 4.201e-94
Identity = 170/255 (66.67%), Postives = 203/255 (79.61%), Query Frame = 1
Query:    7 GGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSCDFTRSGRISSHPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHKKRVLILANSGADLIAFETIPNXXXXXXXXXXXXXXGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTAPRFIHGLILSVRKVTSKPVIIY 771
            GG  V+DGG ATELE +GADLNDPLWSAKCL+SSPHL+RKVH+DYL+AGANIIITASYQATIQGFE+KGFS E++E LL +SVEIA EARE++    ++ S           HPVLVAAS+GSYGAYLADGSEYSGDYG+A + E LK+FH++R+ +LA +G DLIAFETIPN               I IPAWFSFNSKDG+++VSGDS++EC +IAD C +V AVGINCT PRFIHGLILS+RKVT KP++IY
Sbjct:   21 GGRLVLDGGLATELEANGADLNDPLWSAKCLLSSPHLIRKVHMDYLEAGANIIITASYQATIQGFESKGFSKEQSENLLTKSVEIALEAREMFLKEHLEKSTPI-------QHPVLVAASLGSYGAYLADGSEYSGDYGEAGTKEFLKDFHRRRLQVLAEAGPDLIAFETIPNKLEAEAYVELLEECNINIPAWFSFNSKDGVHIVSGDSLIECTTIADKCAKVGAVGINCTPPRFIHGLILSIRKVTDKPILIY 268          
BLAST of CV885113 vs. ExPASy Swiss-Prot
Match: HMT3_MAIZE (Homocysteine S-methyltransferase 3 OS=Zea mays GN=HMT-3 PE=2 SV=1)

HSP 1 Score: 340.117 bits (871), Expect = 7.922e-93
Identity = 167/255 (65.49%), Postives = 203/255 (79.61%), Query Frame = 1
Query:    7 GGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSCDFTRSGRISSHPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHKKRVLILANSGADLIAFETIPNXXXXXXXXXXXXXXGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTAPRFIHGLILSVRKVTSKPVIIY 771
            GG  V+DGG ATELE +GADLNDPLWSAKCL+SSPHL+RKVH+DYL+AGANIIITASYQATIQGFE+KGFS E++E LL +SV+IA EARE++    ++ S           HP+LVAA++GSYGAYLADGSEYSGDYG+A + E LK+FH++R+ +LA +G DLIAFETIPN               I IP+W SFNSKDG++VVSGDS++ECA+IAD C +V AVGINCT PRFIHGLILS+RKVT KP++IY
Sbjct:   21 GGRLVLDGGLATELEANGADLNDPLWSAKCLLSSPHLIRKVHMDYLEAGANIIITASYQATIQGFESKGFSKEQSENLLTKSVQIALEAREMFLKEHLEKSTPI-------QHPILVAAALGSYGAYLADGSEYSGDYGEAGTKEFLKDFHRRRLQVLAEAGPDLIAFETIPNKLEAQAYVELLEECNINIPSWLSFNSKDGVHVVSGDSLIECATIADKCAKVGAVGINCTPPRFIHGLILSIRKVTDKPILIY 268          
BLAST of CV885113 vs. ExPASy Swiss-Prot
Match: HMT4_MAIZE (Homocysteine S-methyltransferase 4 OS=Zea mays GN=HMT-4 PE=2 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 3.680e-90
Identity = 161/257 (62.65%), Postives = 199/257 (77.43%), Query Frame = 1
Query:    1 KCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSCDFTRSGRISSHPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHKKRVLILANSGADLIAFETIPNXXXXXXXXXXXXXXGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTAPRFIHGLILSVRKVTSKPVIIY 771
            + GG +VVDGG  TELE HGADL+D LWSAKCL S+PHL+RKVHLDYL+AGA++II+ASYQATI+GF+++GFS +E+E LLRRSV +A EAR ++       + +  RS R    P LVAASVGSYGAY ADGSEYSGDYG +++ E LK FH++R+ +LA +G DLIAFETIPN              GI IPAWFSF SKDG+N  SGD I ECA++ADSC +V AVG+NCTAPRFIHGLILS++KVTSKP+++Y
Sbjct:   20 EAGGCAVVDGGLGTELEAHGADLHDALWSAKCLASAPHLIRKVHLDYLEAGADVIISASYQATIEGFQSRGFSRDESEELLRRSVHVAQEARRVF-------AAEGDRSSRRGRPPALVAASVGSYGAYRADGSEYSGDYGKSMTKEDLKNFHRRRLQVLAGAGPDLIAFETIPNKLEAQVYAELLEENGIRIPAWFSFTSKDGVNAASGDPINECAAVADSCPRVDAVGVNCTAPRFIHGLILSIKKVTSKPIVVY 269          
BLAST of CV885113 vs. ExPASy Swiss-Prot
Match: HMT1_MAIZE (Homocysteine S-methyltransferase 1 OS=Zea mays GN=HMT-1 PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 1.899e-70
Identity = 130/257 (50.58%), Postives = 178/257 (69.26%), Query Frame = 1
Query:    1 KCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSCDFTRSGRISSHPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHKKRVLILANSGADLIAFETIPNXXXXXXXXXXXXXXGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTAPRFIHGLILSVRKVTSKPVIIY 771
            + GG +V+DGGFAT+LE  GAD+NDPLWSA CL++ PHLV++VH+ YL+AGA++II++SYQATI GF A+G S  EAE LLR SV++A EAR+ ++   +       R  +   +  LVAAS+GSYGAYLADGSEYSG YG  ++ E LK+FH++R+ +LA++G DLIAFE IPN               + IP+W  F+S DG N+ SG+S  +C  I ++ E+V  VG+NCT P+FI G+I   RK T K + +Y
Sbjct:   10 RAGGCAVIDGGFATQLEALGADINDPLWSAACLITRPHLVKEVHMQYLEAGADVIISSSYQATIPGFIARGMSVAEAEDLLRTSVKLANEARDEFWKSTL-------RKSKPIYNRALVAASIGSYGAYLADGSEYSGSYGADITAEKLKDFHRRRLQVLASAGPDLIAFEAIPNQMEAQALVELLEEEKVQIPSWICFSSVDGKNLCSGESFADCLKILNASEKVAVVGVNCTPPQFIEGIICEFRKQTKKAIAVY 259          
BLAST of CV885113 vs. ExPASy Swiss-Prot
Match: HMT1_ARATH (Homocysteine S-methyltransferase 1 OS=Arabidopsis thaliana GN=HMT-1 PE=1 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 4.230e-70
Identity = 130/257 (50.58%), Postives = 177/257 (68.87%), Query Frame = 1
Query:    1 KCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSCDFTRSGRISSHPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHKKRVLILANSGADLIAFETIPNXXXXXXXXXXXXXXGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTAPRFIHGLILSVRKVTSKPVIIY 771
            KCGG +VVDGGFAT+LE HGA +NDPLWSA  L+ +P L+++VH++YL+AGA+I++T+SYQATI GF ++G S EE+E+LL++SVE+A EAR+ ++++  K S         S +  LVAAS+GSYGAYLADGSEYSG YG+ VSL+ LK+FH++R+ +L  +G DL+AFETIPN               + IPAW  F S DG    SG+S  EC    +    + AVGINC  P+FI  LI    K+T K +++Y
Sbjct:   16 KCGGCAVVDGGFATQLEIHGAAINDPLWSAVSLIKNPELIKRVHMEYLEAGADIVVTSSYQATIPGFLSRGLSIEESESLLQKSVELAVEARDRFWEKVSKVSGH-------SYNRALVAASIGSYGAYLADGSEYSGHYGENVSLDKLKDFHRRRLQVLVEAGPDLLAFETIPNKLEAQACVELLEEEKVQIPAWICFTSVDGEKAPSGESFEECLEPLNKSNNIYAVGINCAPPQFIENLIRKFAKLTKKAIVVY 265          
BLAST of CV885113 vs. ExPASy Swiss-Prot
Match: HMT_BACSU (Homocysteine S-methyltransferase ybgG OS=Bacillus subtilis GN=ybgG PE=4 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.755e-53
Identity = 114/251 (45.42%), Postives = 154/251 (61.35%), Query Frame = 1
Query:   19 VVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSCDFTRSGRISSHPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHKKRVLILANSGADLIAFETIPNXXXXXXXXXXXXXXGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTAPRFIHGLILSVRKVTSKPVIIY 771
            V+DG  ATELER G +LND LWSAK L+  P L+++VH DY  AGA+  ITASYQ+T +GF A+G S  EA  L+  SV IA EAR+ ++              R++    ++AAS+G YGAYLADGSEY G+Y  A+S + L EFH+ R+  L  +GAD++A ETIP                 T  AW SF++KDG+++  G    +CAS  D   Q+ A+GINCT  + I  LI  ++K TSKP+I+Y
Sbjct:   15 VLDGAMATELERKGCNLNDSLWSAKILMEEPELIKQVHTDYFAAGADCAITASYQSTFEGFAARGLSEAEARRLIELSVSIAAEARDEFWS---------LEENRLNRPKPIIAASIGPYGAYLADGSEYRGNY--AISEDELIEFHRPRMKALIEAGADVLACETIPCLTEAKAIVRLLKEFPETY-AWISFSAKDGLHISDGTPAADCASWLDEHRQIAALGINCTPLQHIPSLIEELKKNTSKPIIVY 253          
BLAST of CV885113 vs. ExPASy Swiss-Prot
Match: MMUM_ECOLI (Homocysteine S-methyltransferase OS=Escherichia coli (strain K12) GN=mmuM PE=1 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 1.790e-44
Identity = 106/251 (42.23%), Postives = 145/251 (57.77%), Query Frame = 1
Query:   19 VVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSCDFTRSGRISSHPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHKKRVLILANSGADLIAFETIPNXXXXXXXXXXXXXXGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTAPRFIHGLILSVRKVTSKPVIIY 771
            ++DG  ATELE  G +L D LWSAK LV +P L+R+VHLDY  AGA   ITASYQAT  GF A+G    +++AL+ +SVE+A +ARE Y         +  ++G +     LVA SVG YGAYLADGSEY GDY    S+E  + FH+ RV  L ++GADL+A ET+PN                   AWFSF  +D  ++  G  + +  ++     QVVA+GINC A       +  +  +T  P+++Y
Sbjct:   18 LLDGAMATELEARGCNLADSLWSAKVLVENPELIREVHLDYYRAGAQCAITASYQATPAGFAARGLDEAQSKALIGKSVELARKAREAYL-------AENPQAGTL-----LVAGSVGPYGAYLADGSEYRGDY--HCSVEAFQAFHRPRVEALLDAGADLLACETLPNFSEIEALAELLTAYP-RARAWFSFTLRDSEHLSDGTPLRDVVALLAGYPQVVALGINCIALENTTAALQHLHGLTVLPLVVY 253          
The following BLAST results are available for this feature:
BLAST of CV885113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
HMT3_ARATH5.289e-10571.21Homocysteine S-methyltransferase 3 OS=Arabidopsis ... [more]
HMT2_ARATH8.179e-9867.84Homocysteine S-methyltransferase 2 OS=Arabidopsis ... [more]
SMTA_ASTBI8.464e-9565.89Selenocysteine methyltransferase OS=Astragalus bis... [more]
HMT2_MAIZE4.201e-9466.67Homocysteine S-methyltransferase 2 OS=Zea mays GN=... [more]
HMT3_MAIZE7.922e-9365.49Homocysteine S-methyltransferase 3 OS=Zea mays GN=... [more]
HMT4_MAIZE3.680e-9062.65Homocysteine S-methyltransferase 4 OS=Zea mays GN=... [more]
HMT1_MAIZE1.899e-7050.58Homocysteine S-methyltransferase 1 OS=Zea mays GN=... [more]
HMT1_ARATH4.230e-7050.58Homocysteine S-methyltransferase 1 OS=Arabidopsis ... [more]
HMT_BACSU2.755e-5345.42Homocysteine S-methyltransferase ybgG OS=Bacillus ... [more]
MMUM_ECOLI1.790e-4442.23Homocysteine S-methyltransferase OS=Escherichia co... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012G01_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T3_G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885113 ID=CV885113; Name=CV885113; organism=Citrus sinensis; type=EST; length=773bp
AAGTGCGGCGGTTACTCCGTTGTCGACGGCGGCTTCGCCACCGAACTCGA
ACGCCACGGCGCCGACCTAAACGACCCTCTTTGGAGCGCCAAGTGCCTCG
TCTCTTCTCCTCACCTCGTCAGAAAGGTTCATCTAGATTATCTTGATGCT
GGAGCAAATATAATCATCACTGCATCATATCAGGCCACCATTCAAGGTTT
TGAGGCAAAAGGATTCTCTACAGAGGAAGCAGAAGCTTTGCTTAGGAGAA
GTGTTGAAATTGCATGTGAAGCACGCGAAATCTATTATGACAGATGTATG
AAAGATTCTTGTGACTTCACAAGAAGTGGAAGGATCTCAAGTCATCCAGT
TTTAGTTGCTGCTTCTGTAGGCAGTTATGGGGCTTATTTGGCTGATGGGT
CTGAATATAGTGGGGACTATGGCGATGCAGTTTCTCTGGAAACATTGAAG
GAGTTCCATAAGAAGAGAGTACTGATTTTAGCCAATTCAGGCGCTGATCT
AATTGCATTTGAAACCATTCCGAATAAGCTGGAAGCCAAGGCCTATGCTG
AGCTTCTTGAGGAAGAAGGAATAACTATTCCAGCATGGTTTTCTTTCAAT
TCTAAGGATGGAATTAATGTGGTTAGTGGTGATTCTATATTAGAGTGTGC
CTCAATTGCAGATTCATGCGAGCAAGTTGTTGCTGTTGGAATTAACTGTA
CAGCTCCTCGATTTATCCATGGACTCATACTCTCTGTTAGAAAGGTAACT
AGTAAACCTGTAATCATATATCC
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