CV885102

Overview
NameCV885102
Unique NameCV885102
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length498
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV885102_ssr190 microsatellite CV885102_ssr190:190..201. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10386 contig Csv1_Contig10386:17..515. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CV885102 vs. ExPASy Swiss-Prot
Match: AKR2_ARATH (Ankyrin repeat domain-containing protein 2 OS=Arabidopsis thaliana GN=AKR2 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.078e-11
Identity = 48/132 (36.36%), Postives = 67/132 (50.76%), Query Frame = 2 
Query:   56 LGEKMAVPRNGMMEEDDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDRDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 451
            LGE M +P  G+ ++  S E     E +      E E+  H       A LGDV  L+ AL +  G+ DE   +  TALH  C YG L C Q+L++ GAS+ A D++   PLH A   G  E V LL+ + +
Sbjct:  189 LGEAMGMPVAGLPDQTVSAEPEVAEEGE------EEESIVH-----QTASLGDVEGLKAALAS-GGNKDEEDSEGRTALHFACGYGELKCAQVLIDAGASVNAVDKNKNTPLHYAAGYGRKECVSLLLENGA 308
The following BLAST results are available for this feature:
BLAST of CV885102 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AKR2_ARATH1.078e-1136.36Ankyrin repeat domain-containing protein 2 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012F05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T7_F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885102 ID=CV885102; Name=CV885102; organism=Citrus sinensis; type=EST; length=498bp
CTTTTTTTAGTTTTCATTCTACTTTTCTCTGCAAACACCGTTATAAAAAA
GTTAATTAGGAGAAAAAATGGCGGTACCGCGCAACGGAATGATGGAGGAA
GATGATAGCGAAGAAGATAACGCTCTCTTTGAAGAAGACGGCGTTAATAT
GGACCTCGAATCGGAAACTCCACCTCACCTCCGTGACCTCGCCGCCGCCG
CTCAGCTCGGCGACGTTCATTCCCTCCGTCTCGCTCTAGATAACTTGAGT
GGTAGTATTGATGAACCAGTAGAAGACAGGGACACTGCTCTCCATCTGAC
ATGCCTCTATGGCTATCTGCCTTGTGTTCAGCTACTCTTGGAACGAGGGG
CTAGTTTGGAGGCCAAGGATGAAGATGGAGCAATTCCTCTGCATGATGCT
TGTGCTGGGGGGTTTATTGAGATAGTTCAACTTCTAATTAATAGTGCTAG
CGGCACTGAATGTGTAAAAAGGATGTTAGAAACTGCTGATGCTGAAGC
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