CV885086

Overview
NameCV885086
Unique NameCV885086
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3385 contig Csv1_Contig3385:1..839. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV885086 vs. ExPASy Swiss-Prot
Match: LEC2_CLALU (Agglutinin-2 OS=Cladrastis lutea PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.306e-11
Identity = 69/233 (29.61%), Postives = 103/233 (44.21%), Query Frame = -2
Query:  161 DNKTLICYG--AIESSG-ALSITPGPPPNLPIR-KVGRVLYGKPLSLQRSFID------TTITIKISRHQNYTDRAGDGMTFIFASDKNGPSAKGVGEYLGLQSSPGDKFPPL----AVELDTCLNKNLXXXXXXXXXXXXXXIESNPVNSLLDV--DLKSGRAIQVRIYYNPDFGQLSIYAAYSGETLVK--VIEKPINLSDIIPTPVYVGFTAATGDFLESHEVINWTFNS 805
            D + LI  G   I S G +L +T       P+R  VGR LY  PL L  S  +      TT T  +S   + T+  GDG+ F  A  +        G  LGL S        L    AVE DT +N N               I+ N + S   V    ++G     +I YN D  +LS+ ++Y      +   +   ++L   +P  V VGF+ +TG ++++H +++WTFNS
Sbjct:   49 DQRDLILQGDAKISSGGDSLQLTKTDTSGKPVRGSVGRALYYTPLHLWDSSTNRLASFQTTFTFVLS---SPTNNPGDGIAFFIAPPETTIPPGSSGGLLGLFSPDNALNNSLNQIVAVEFDTFVNNN------WDPSHRHIGIDVNTIKSSATVRWQRENGSLATAQISYNSDTKKLSVVSSYPNTQANEDYTVSYDVDLKTELPEWVRVGFSGSTGGYVQNHNILSWTFNS 272          
BLAST of CV885086 vs. ExPASy Swiss-Prot
Match: LEC2_CYTSC (2-acetamido-2-deoxy-D-galactose-binding seed lectin 2 OS=Cytisus scoparius PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.012e-11
Identity = 71/241 (29.46%), Postives = 101/241 (41.91%), Query Frame = -2
Query:  161 SFAKDSCDNKTLICY--GAIESSGALSITPGPPPNLPIRKVGRVLYGKPLSL-------QRSFIDTTITIKISRHQNYTDRAGDGMTFIFASDKNGPSAKGVGEYLGL---QSSPGDKFPPLAVELDTCLNKNLXXXXXXXXXXXXXXIESNPVNSLLDVDLKSGRAIQVRIYYNPDFGQLSIYAAY-SGETLVK---VIEKPINLSDIIPTPVYVGFTAATG---DFLESHEVINWTFNS 826
            SF K   D K LI      I  +G L +T           +GR LY  P+ +       + SF  T  +  IS   N +  A DG+ F  A     P +   G YLGL    SS       +AVE DT  N                 I+S  V+S      K+G    V I Y P    L     Y SG+T  K   +I   ++L   +P  V +GF+A TG   +++E+H++++W+F S
Sbjct:    7 SFTKFKTDQKNLILQRDALITPTGKLQLTTVENGKPAAYSLGRALYSTPIHIWDKSTGDEASFA-TFFSFVISDAPNPSTAATDGLAFFLAPADTQPQS--AGGYLGLFEKDSSYNSSNQIVAVEFDTYYNSAWDPQTNPHIGIDVNTIKSKKVSSW---GFKNGNVATVLITYQPSSKSLVASLVYPSGQTSDKTSYIISANVDLKATVPEWVRIGFSATTGQTDNYIETHDILSWSFKS 241          
The following BLAST results are available for this feature:
BLAST of CV885086 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
LEC2_CLALU2.306e-1129.61Agglutinin-2 OS=Cladrastis lutea PE=1 SV=1[more]
LEC2_CYTSC3.012e-1129.462-acetamido-2-deoxy-D-galactose-binding seed lecti... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012E07_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T7_E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885086 ID=CV885086; Name=CV885086; organism=Citrus sinensis; type=EST; length=839bp
GCTATCATTTTATTCATATTTTAATGCAAGAGCCATGTCACTTTATTGGT
GATATTAATTATTATTGATTATAATTTATGTGACATGGTTTTTCAAGGAC
GGTTTAGAATTATATTGGCATCACCAGGTTTTTCTCCTTGAGAGAAGGCG
GCACTGGGAACGAGTTGAAGGTCCAATTTATAACCTCATGGCTTTCTAAA
AAGTCCCCCGTAGCTGCTGTGAATCCAACATAGACGGGCGTTGGAATTAT
ATCTGACAGGTTAATGGGTTTTTCAATCACCTTCACAAGTGTTTCCCCCG
AATATGCCGCATAAATAGAGAGTTGTCCAAAGTCTGGATTGTAATAAATT
CGAACCTGGATTGCTCGTCCACTTTTGAGATCAACGTCAAGCAGACTATT
AACTGGATTTGATTCGATTCCGTTTATGTCGATGCCAATATGGTTATCAT
CTGGATCATTCAGGTTCTTGTTCAGGCATGTGTCCAGCTCCACGGCTAAT
GGAGGAAATTTATCGCCTGGTGAAGACTGCAGTCCAAGATATTCGCCGAC
GCCCTTTGCTGATGGACCGTTTTTATCGCTTGCAAAAATGAACGTCATGC
CATCTCCGGCACGATCAGTGTAATTCTGATGGCGTGAGATCTTAATGGTG
ATGGTGGTATCAATAAAAGATCGCTGTAAACTCAGAGGCTTGCCGTATAA
AACCCGTCCAACCTTTCTGATCGGCAGGTTTGGTGGAGGGCCTGGTGTGA
TGCTTAAGGCGCCGGAACTTTCAATCGCTCCGTAGCAAATGAGGGTCTTA
TTGTCACAACTGTCTTTGGCGAATGAGGGAAATGAGCCT
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