CV885069

Overview
NameCV885069
Unique NameCV885069
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885069 vs. ExPASy Swiss-Prot
Match: METE_SOLSC (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Solenostemon scutellarioides GN=MET PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 3.383e-34
Identity = 71/73 (97.26%), Postives = 71/73 (97.26%), Query Frame = -3
Query:  275 IGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQLASAK 493
            IGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKY EVKPAL NMVAAAKLLRTQLASAK
Sbjct:  692 IGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYAEVKPALENMVAAAKLLRTQLASAK 764          
BLAST of CV885069 vs. ExPASy Swiss-Prot
Match: METE_CATRO (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Catharanthus roseus GN=METE PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 2.864e-33
Identity = 68/73 (93.15%), Postives = 71/73 (97.26%), Query Frame = -3
Query:  275 IGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQLASAK 493
            IGPGVYDIHSPRIPSTEEIADRINKMLAVL+TNILWVNPDCGLKTRKY EVKPAL NMV+AAKL+RTQLASAK
Sbjct:  693 IGPGVYDIHSPRIPSTEEIADRINKMLAVLDTNILWVNPDCGLKTRKYAEVKPALENMVSAAKLIRTQLASAK 765          
BLAST of CV885069 vs. ExPASy Swiss-Prot
Match: METE_ARATH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Arabidopsis thaliana GN=CIMS PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 4.135e-32
Identity = 66/73 (90.41%), Postives = 70/73 (95.89%), Query Frame = -3
Query:  275 IGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQLASAK 493
            IGPGVYDIHSPRIPS+EEIADR+NKMLAVLE NILWVNPDCGLKTRKYTEVKPAL NMV AAKL+R+QLASAK
Sbjct:  693 IGPGVYDIHSPRIPSSEEIADRVNKMLAVLEQNILWVNPDCGLKTRKYTEVKPALKNMVDAAKLIRSQLASAK 765          
BLAST of CV885069 vs. ExPASy Swiss-Prot
Match: METE_MESCR (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Mesembryanthemum crystallinum GN=METE PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 5.055e-30
Identity = 63/73 (86.30%), Postives = 67/73 (91.78%), Query Frame = -3
Query:  275 IGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQLASAK 493
            IGPGVYDIHSPRIP TEE+ADRI KMLAVLE+N+LWVNPDCGLKTRKY EV PALSNMVAAAK LR +LASAK
Sbjct:  693 IGPGVYDIHSPRIPPTEELADRIRKMLAVLESNVLWVNPDCGLKTRKYGEVNPALSNMVAAAKQLRQELASAK 765          
BLAST of CV885069 vs. ExPASy Swiss-Prot
Match: METE_CYTH3 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=metE PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 8.090e-20
Identity = 43/71 (60.56%), Postives = 57/71 (80.28%), Query Frame = -3
Query:  281 IGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQLAS 493
            IGPGVYDIHSPRIP+T+E+AD +NK + VL    +WVNPDCGLKTR++ E + AL NMVAAA+ +R ++ +
Sbjct:  703 IGPGVYDIHSPRIPTTDEMADLLNKAMHVLPVRNIWVNPDCGLKTRRWPETEAALINMVAAAQKIRKEITT 773          
BLAST of CV885069 vs. ExPASy Swiss-Prot
Match: METE_DESRM (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Desulfotomaculum reducens (strain MI-1) GN=metE PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.526e-18
Identity = 40/69 (57.97%), Postives = 55/69 (79.71%), Query Frame = -3
Query:  287 IGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQL 493
            IGPG+YDIHSPR+PS EE+ ++I  ++ VL  + LW+NPDCGLKTRK+ E++ +LSNMV AA+ +R  L
Sbjct:  690 IGPGIYDIHSPRVPSVEELEEKIRNLMLVLPPSKLWINPDCGLKTRKWDEIRWSLSNMVKAAQHIRLGL 758          
BLAST of CV885069 vs. ExPASy Swiss-Prot
Match: METE_BRAJA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bradyrhizobium japonicum GN=metE PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.993e-18
Identity = 43/66 (65.15%), Postives = 53/66 (80.30%), Query Frame = -3
Query:  296 IGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLR 493
            IGPGVYDIHSPR+P T+E+ + I      L+ + LWVNPDCGLKTRK+ EV+PAL+NMVAAA+ LR
Sbjct:  708 IGPGVYDIHSPRVPETDEMKELIVLARTRLQDSQLWVNPDCGLKTRKWEEVRPALANMVAAARELR 773          
BLAST of CV885069 vs. ExPASy Swiss-Prot
Match: METE_BIFAA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=metE PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.993e-18
Identity = 42/69 (60.87%), Postives = 53/69 (76.81%), Query Frame = -3
Query:  284 GPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQLA 490
            GPGVYDIHSPRIPS +EI DRI ++L  ++   +W+NPDCGLKTR   E  P+L N+VAAAK +R +LA
Sbjct:  699 GPGVYDIHSPRIPSEQEIEDRIYEILKKMDVEKVWINPDCGLKTRGNAETWPSLENLVAAAKAVRAKLA 767          
BLAST of CV885069 vs. ExPASy Swiss-Prot
Match: METE_ACIF5 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=metE PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.993e-18
Identity = 41/68 (60.29%), Postives = 51/68 (75.00%), Query Frame = -3
Query:  290 IGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQ 493
            IGPGVYDIHSPR+PS EE+   + K + V+    LW+NPDCGLKTRK+ EV PAL NMV AA+ +R +
Sbjct:  715 IGPGVYDIHSPRVPSVEEMVGLMEKAVKVVPAERLWINPDCGLKTRKWAEVTPALENMVEAARQVRAR 782          
BLAST of CV885069 vs. ExPASy Swiss-Prot
Match: METE_ACIF2 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=metE PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.993e-18
Identity = 41/68 (60.29%), Postives = 51/68 (75.00%), Query Frame = -3
Query:  290 IGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQ 493
            IGPGVYDIHSPR+PS EE+   + K + V+    LW+NPDCGLKTRK+ EV PAL NMV AA+ +R +
Sbjct:  715 IGPGVYDIHSPRVPSVEEMVGLMEKAVKVVPAERLWINPDCGLKTRKWAEVTPALENMVEAARQVRAR 782          
The following BLAST results are available for this feature:
BLAST of CV885069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 269
Match NameE-valueIdentityDescription
METE_SOLSC3.383e-3497.265-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CATRO2.864e-3393.155-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ARATH4.135e-3290.415-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_MESCR5.055e-3086.305-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CYTH38.090e-2060.565-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_DESRM1.526e-1857.975-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BRAJA1.993e-1865.155-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BIFAA1.993e-1860.875-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ACIF51.993e-1860.295-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ACIF21.993e-1860.295-methyltetrahydropteroyltriglutamate--homocystein... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_012D07_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T3_D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885069 ID=CV885069; Name=CV885069; organism=Citrus sinensis; type=EST; length=495bp
TAACAACATTAATGCACAAACCAGTAAAGGTATTCCATCGATTTACGGCC
ACTGATAGCAAGCCGGGGCCTTTAAAAACGGAAAATACAAGCAAAGAAAA
ATAGAAGCCAATTGCTCAATAGTGCATAATATGCATACGGAAAATTTTCA
TCACATCACGACCCACAGTTATTCGAATAGGTAATAAGACAGGAATTTTC
TTTCTTTGTTTAAAGTGAAAAAAAAAAAAAATCAATGGCTCAGGAAGTAT
CCCTCCAATCTCCAGAACCACTCACTTGGCACTGGCAAGCTGGGTGCGGA
GTAGCTTGGCAGCAGCGACCATGTTTGAGAGGGCTGGCTTCACCTCAGTG
TACTTGCGAGTCTTAAGACCACAGTCAGGGTTAACCCACAAAATGTTGGT
TTCTAGCACAGCAAGCATCTTGTTGATTCTGTCAGCAATTTCTTCAGTTG
ATGGTATTCTTGGAGAGTGGATGTCATACACACCAGGGCCAATTC
back to top