CV885067

Overview
NameCV885067
Unique NameCV885067
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CV885067 vs. ExPASy Swiss-Prot
Match: SCL4_ARATH (Scarecrow-like protein 4 OS=Arabidopsis thaliana GN=SCL4 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.113e-31
Identity = 60/109 (55.05%), Postives = 84/109 (77.06%), Query Frame = -1 
Query:  310 ESLEPNMTTDSDERFQVERQILGPRIANLLAPEKQGAKRERVEDIENWRIFMENSDFEGIPFSHYALSQAEILLWNYNYSPLFTLNQSHDNLLTLSWKKVPLLTVSSWR 636
            ESLEPN+  DS+ER +VER++ G RI+ L+ PEK G  RER+E+ E WR+ MEN+ FE +  S+YA+SQA+ILLWNYNYS L+++ +S    ++L+W  +PLLT+SSWR
Sbjct:  476 ESLEPNLGRDSEERVRVERELFGRRISGLIGPEKTGIHRERMEEKEQWRVLMENAGFESVKLSNYAVSQAKILLWNYNYSNLYSIVESKPGFISLAWNDLPLLTLSSWR 584
[Close]
BLAST of CV885067 vs. ExPASy Swiss-Prot
Match: SCL7_ARATH (Scarecrow-like protein 7 OS=Arabidopsis thaliana GN=SLC7 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.042e-25
Identity = 56/113 (49.56%), Postives = 78/113 (69.03%), Query Frame = -1 
Query:  310 ESLEPNMTTDSDERFQVERQILGPRIANLLAPE----KQGAKRERVEDIENWRIFMENSDFEGIPFSHYALSQAEILLWNYNYSPLFTLNQSHDNLLTLSWKKVPLLTVSSWR 636
            ESLEPN+  DS ER +VER + G RI +L+  +    K G +   +E+ E WR+ ME + FE +  S+YA+SQA++LLWNYNYS L++L +S    ++L+W  VPLLTVSSWR
Sbjct:  430 ESLEPNLDRDSKERLRVERVLFGRRIMDLVRSDDDNNKPGTRFGLMEEKEQWRVLMEKAGFEPVKPSNYAVSQAKLLLWNYNYSTLYSLVESEPGFISLAWNNVPLLTVSSWR 542
The following BLAST results are available for this feature:
BLAST of CV885067 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SCL4_ARATH2.113e-3155.05Scarecrow-like protein 4 OS=Arabidopsis thaliana G... [more]
SCL7_ARATH5.042e-2549.56Scarecrow-like protein 7 OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012D06_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T3_D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885067 ID=CV885067; Name=CV885067; organism=Citrus sinensis; type=EST; length=636bp
ATTTTCCACTTCGATTTCCAACTCACTGTAACTACAATTAGTCATGCTTT
CAGAAGCGACGGATTCGAAAATCGAAAGTAAGCAAAAACCCAAAAAAATA
CATCCAAAAGACGCCTACAAGGACAAAAGCTAAACGAAGTGGGATAAACA
TGGTTAACAATGCTAATGCAATGTTTCAATTGGTTGGCGCTAGACTAAGA
AACTACATATTAACTAAACTAGAGAATGAAACTGAAAGCCAAATCCGATC
AGTAAGGTGAACAATATGAACAAAATGAGACAGAAACCCACCATCATGAT
CAACATTCAACGCCATGAAGAAACGGTAAGAAGAGGCACCTTCTTCCATG
ACAAGGTTAACAAGTTATCGTGAGACTGATTCAACGTGAACAGAGGACTG
TAATTATAGTTCCATAACAAAATCTCAGCCTGACTAAGTGCATAATGGCT
GAAGGGTATCCCTTCAAAATCGGAATTCTCCATGAAAATGCGCCAATTCT
CGATATCCTCGACACGTTCTCTTTTGGCTCCCTGTTTCTCTGGTGCAAGC
AAATTTGCAATTCTTGGACCCAGAATTTGTCTTTCAACTTGGAATCTCTC
ATCTGAGTCCGTGGTCATGTTCGGCTCCAGGGACTC
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