CV885065

Overview
NameCV885065
Unique NameCV885065
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7804 contig Csv1_Contig7804:173..932. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV885065 vs. ExPASy Swiss-Prot
Match: DCE_PETHY (Glutamate decarboxylase OS=Petunia hybrida GN=GAD PE=1 SV=1)

HSP 1 Score: 417.542 bits (1072), Expect = 3.838e-116
Identity = 207/222 (93.24%), Postives = 212/222 (95.50%), Query Frame = 1
Query:   64 MVLSKTFSESDESIHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVK 729
            MVLSKT S+SD SIHSTFASRYVR SLPRF MP+NSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMM +INKNYVDMDEYPVTTELQNRCVN+IA LFNAPLED ETAVGVGTVGSSEAIMLAGLAFKRKWQNK KA+GKP DKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDP KAVEMVDENTICVAAILGSTLNGEFEDVK
Sbjct:    1 MVLSKTVSQSDVSIHSTFASRYVRTSLPRFKMPDNSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMDSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEDGETAVGVGTVGSSEAIMLAGLAFKRKWQNKMKAQGKPCDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPEKAVEMVDENTICVAAILGSTLNGEFEDVK 222          
BLAST of CV885065 vs. ExPASy Swiss-Prot
Match: DCE1_ARATH (Glutamate decarboxylase 1 OS=Arabidopsis thaliana GN=GAD1 PE=1 SV=2)

HSP 1 Score: 416.387 bits (1069), Expect = 8.550e-116
Identity = 205/223 (91.93%), Postives = 214/223 (95.96%), Query Frame = 1
Query:   64 MVLSKTFSESDESIHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKL 732
            MVLS   SESD S+HSTFASRYVR SLPRF MPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKL+M++INKNYVDMDEYPVTTELQNRCVN+IA LFNAPLE++ETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKP DKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDP +AV+MVDENTICVAAILGSTLNGEFEDVKL
Sbjct:    1 MVLSHAVSESDVSVHSTFASRYVRTSLPRFKMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKL 223          
BLAST of CV885065 vs. ExPASy Swiss-Prot
Match: DCE2_ARATH (Glutamate decarboxylase 2 OS=Arabidopsis thaliana GN=GAD2 PE=1 SV=1)

HSP 1 Score: 394.045 bits (1011), Expect = 4.544e-109
Identity = 195/222 (87.84%), Postives = 209/222 (94.14%), Query Frame = 1
Query:   64 MVLSKTFSESDESIHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVK 729
            MVL+KT + +DES+ + F SRYVR +LP++ + ENSIPK+AAYQII DELMLDGNPRLNLASFVTTWMEPECDKL+M +INKNYVDMDEYPVTTELQNRCVNIIARLFNAPLE+SETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKP+DKPNIVTGANVQVCWEKFARYFEVELKEV LSEGYYVMDP KA EMVDENTICVAAILGSTLNGEFEDVK
Sbjct:    1 MVLTKT-ATNDESVCTMFGSRYVRTTLPKYEIGENSIPKDAAYQIIKDELMLDGNPRLNLASFVTTWMEPECDKLIMDSINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEESETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVNLSEGYYVMDPDKAAEMVDENTICVAAILGSTLNGEFEDVK 221          
BLAST of CV885065 vs. ExPASy Swiss-Prot
Match: DCE_SOLLC (Glutamate decarboxylase OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 390.578 bits (1002), Expect = 5.024e-108
Identity = 190/224 (84.82%), Postives = 209/224 (93.30%), Query Frame = 1
Query:   64 MVLSKT-FSESDESIHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKL 732
            MVL+ T   +S+ES+H TFASRYV+  LP+F MP+ S+PKEAAYQI+NDELMLDGNPRLNLASFV+TWMEPECDKL+M++INKNYVDMDEYPVTTELQNRCVN++A LF+AP+ D ETAVGVGTVGSSEAIMLAGLAFKRKWQ+KRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKL EGYYVMDP KAVE+VDENTICVAAILGSTL GEFEDVKL
Sbjct:    1 MVLTTTSIRDSEESLHCTFASRYVQEPLPKFKMPKKSMPKEAAYQIVNDELMLDGNPRLNLASFVSTWMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMLAHLFHAPVGDDETAVGVGTVGSSEAIMLAGLAFKRKWQSKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLKEGYYVMDPAKAVEIVDENTICVAAILGSTLTGEFEDVKL 224          
BLAST of CV885065 vs. ExPASy Swiss-Prot
Match: GADA_DICDI (Glutamate decarboxylase A OS=Dictyostelium discoideum GN=gadA PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.816e-49
Identity = 100/211 (47.39%), Postives = 140/211 (66.35%), Query Frame = 1
Query:   97 ESIHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVK 729
            +  + ++AS      + ++++ E S   E    +I DEL+LDGN + NLA+F  T ++ E   LM   I+KN +D DEYP T E+++RCV+I+A L+N+P E SET +G  T GSSEA ML G+A K +W+  RK +GKPFDKPNIVTG  VQ+CW KFA YF++EL+EV +    Y+M P +A++  DENTI V   LG T   ++EDVK
Sbjct:   12 KGFYDSYASPPATKEISKYSLKEESNKPEVIRDLIIDELLLDGNAKQNLATFCQTDLDKEIHVLMDKCIDKNMIDKDEYPQTAEIESRCVHILADLWNSP-ESSET-IGCSTTGSSEAAMLGGMALKWRWRENRKKQGKPFDKPNIVTGP-VQICWHKFALYFDIELREVPMEHDRYIMTPEEAIKRCDENTIGVIPTLGVTFTLQYEDVK 219          
BLAST of CV885065 vs. ExPASy Swiss-Prot
Match: DCEB_SHIFL (Glutamate decarboxylase beta OS=Shigella flexneri GN=gadB PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.177e-48
Identity = 95/208 (45.67%), Postives = 132/208 (63.46%), Query Frame = 1
Query:   97 ESIHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFE 720
            E + S F ++ +         P + +  + A+QIINDEL LDGN R NLA+F  TW +    KLM  +INKN++D +EYP +  +  RCVN++A L++AP   +  AVG  T+GSSEA ML G+A K +W+ + +A GKP DKPN+V G  VQ+CW KFARY++VEL+E+ +  G   MDP + +E  DENTI V    G T  G +E
Sbjct:   12 ELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYE 218          
BLAST of CV885065 vs. ExPASy Swiss-Prot
Match: DCEB_ECOLI (Glutamate decarboxylase beta OS=Escherichia coli (strain K12) GN=gadB PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.177e-48
Identity = 95/208 (45.67%), Postives = 132/208 (63.46%), Query Frame = 1
Query:   97 ESIHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFE 720
            E + S F ++ +         P + +  + A+QIINDEL LDGN R NLA+F  TW +    KLM  +INKN++D +EYP +  +  RCVN++A L++AP   +  AVG  T+GSSEA ML G+A K +W+ + +A GKP DKPN+V G  VQ+CW KFARY++VEL+E+ +  G   MDP + +E  DENTI V    G T  G +E
Sbjct:   12 ELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYE 218          
BLAST of CV885065 vs. ExPASy Swiss-Prot
Match: DCEB_ECO57 (Glutamate decarboxylase beta OS=Escherichia coli O157:H7 GN=gadB PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.177e-48
Identity = 95/208 (45.67%), Postives = 132/208 (63.46%), Query Frame = 1
Query:   97 ESIHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFE 720
            E + S F ++ +         P + +  + A+QIINDEL LDGN R NLA+F  TW +    KLM  +INKN++D +EYP +  +  RCVN++A L++AP   +  AVG  T+GSSEA ML G+A K +W+ + +A GKP DKPN+V G  VQ+CW KFARY++VEL+E+ +  G   MDP + +E  DENTI V    G T  G +E
Sbjct:   12 ELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYE 218          
BLAST of CV885065 vs. ExPASy Swiss-Prot
Match: DCEA_SHIFL (Glutamate decarboxylase alpha OS=Shigella flexneri GN=gadA PE=2 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 1.177e-48
Identity = 95/208 (45.67%), Postives = 132/208 (63.46%), Query Frame = 1
Query:   97 ESIHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFE 720
            E + S F ++ +         P + +  + A+QIINDEL LDGN R NLA+F  TW +    KLM  +INKN++D +EYP +  +  RCVN++A L++AP   +  AVG  T+GSSEA ML G+A K +W+ + +A GKP DKPN+V G  VQ+CW KFARY++VEL+E+ +  G   MDP + +E  DENTI V    G T  G +E
Sbjct:   12 ELLDSRFGAKAISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYE 218          
BLAST of CV885065 vs. ExPASy Swiss-Prot
Match: DCEA_ECOLI (Glutamate decarboxylase alpha OS=Escherichia coli (strain K12) GN=gadA PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.177e-48
Identity = 95/208 (45.67%), Postives = 132/208 (63.46%), Query Frame = 1
Query:   97 ESIHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFE 720
            E + S F ++ +         P + +  + A+QIINDEL LDGN R NLA+F  TW +    KLM  +INKN++D +EYP +  +  RCVN++A L++AP   +  AVG  T+GSSEA ML G+A K +W+ + +A GKP DKPN+V G  VQ+CW KFARY++VEL+E+ +  G   MDP + +E  DENTI V    G T  G +E
Sbjct:   12 ELLDSRFGAKAISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYE 218          
The following BLAST results are available for this feature:
BLAST of CV885065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
DCE_PETHY3.838e-11693.24Glutamate decarboxylase OS=Petunia hybrida GN=GAD ... [more]
DCE1_ARATH8.550e-11691.93Glutamate decarboxylase 1 OS=Arabidopsis thaliana ... [more]
DCE2_ARATH4.544e-10987.84Glutamate decarboxylase 2 OS=Arabidopsis thaliana ... [more]
DCE_SOLLC5.024e-10884.82Glutamate decarboxylase OS=Solanum lycopersicum PE... [more]
GADA_DICDI1.816e-4947.39Glutamate decarboxylase A OS=Dictyostelium discoid... [more]
DCEB_SHIFL1.177e-4845.67Glutamate decarboxylase beta OS=Shigella flexneri ... [more]
DCEB_ECOLI1.177e-4845.67Glutamate decarboxylase beta OS=Escherichia coli (... [more]
DCEB_ECO571.177e-4845.67Glutamate decarboxylase beta OS=Escherichia coli O... [more]
DCEA_SHIFL1.177e-4845.67Glutamate decarboxylase alpha OS=Shigella flexneri... [more]
DCEA_ECOLI1.177e-4845.67Glutamate decarboxylase alpha OS=Escherichia coli ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012D05_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T3_D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885065 ID=CV885065; Name=CV885065; organism=Citrus sinensis; type=EST; length=761bp
CTCTCTGACACCAAAAGAAAAAAACAATCATTATTAAATTTTGTTTGTTT
TAATATTTCAATCATGGTTCTTTCAAAGACATTTTCCGAATCCGATGAGT
CAATTCACTCCACCTTTGCCTCTCGCTACGTCCGAAACTCTCTTCCTCGG
TTCACGATGCCGGAGAACTCGATACCGAAGGAGGCGGCGTACCAGATCAT
AAACGACGAGCTGATGCTCGACGGGAATCCAAGATTGAACTTGGCTTCCT
TCGTCACAACGTGGATGGAGCCTGAATGTGACAAGCTTATGATGGCTGCC
ATTAACAAGAACTACGTTGACATGGATGAGTATCCTGTCACCACCGAGCT
TCAGAATCGATGTGTGAACATCATTGCCCGACTGTTCAATGCTCCACTGG
AGGACTCCGAGACGGCTGTCGGAGTTGGAACCGTAGGATCATCGGAAGCC
ATAATGTTGGCCGGCCTTGCATTCAAAAGAAAGTGGCAGAACAAGCGCAA
GGCTGAAGGAAAGCCCTTTGACAAACCCAACATTGTCACTGGAGCGAACG
TTCAGGTCTGCTGGGAGAAATTTGCAAGGTATTTTGAGGTAGAGTTGAAG
GAAGTGAAGCTGTCGGAAGGCTACTATGTGATGGACCCAGTCAAAGCTGT
AGAAATGGTGGATGAAAACACTATCTGTGTTGCTGCTATTCTGGGTTCTA
CTCTTAATGGAGAATTTGAAGATGTCAAGCTCTTTGAACGACCTTTTGGC
AGAGAAGAACA
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