CV885064

Overview
NameCV885064
Unique NameCV885064
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885064 vs. ExPASy Swiss-Prot
Match: PGLR_VITVI (Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1)

HSP 1 Score: 440.654 bits (1132), Expect = 5.376e-123
Identity = 206/263 (78.33%), Postives = 229/263 (87.07%), Query Frame = -2
Query:   96 PVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFSAVIALGSEMSGGIQDVRAEDITAIDSESGVRIKTAVGRGGFVKDIYVRRMTMKTMKWAFWITGSYGSHPDNNYDPHALPEIQNINYRDMVAENVTMAARLEGIAGDPFTGICISNVTIELTNKPKKLQWNCTDITGISSGVTPKPCELLPDHEPAQTTECNFPDNRLPVENMGVQMCSYKANY 884
            PVYS ++++QGITILAPV SPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWD+YGIAYGMPTKQL+IRRLTCISP+SAVIALGSEMSGGIQDVRAEDI AI+SESG+RIKT +GRGG+VKDIYVR MTMKTMKWAFW+TG+YGSH DN+YDP A P IQ INYRDMVAENV+MAARLEGI  DPFTGICISNVTI L  K KK+ W CTD+ GISSGVTP PC  LPD  P +T+ CNFP   LP++ + +Q CSY  NY
Sbjct:  227 PVYSRNILIQGITILAPVRSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSAVIALGSEMSGGIQDVRAEDIVAINSESGIRIKTGIGRGGYVKDIYVRGMTMKTMKWAFWMTGNYGSHADNHYDPKAFPVIQGINYRDMVAENVSMAARLEGIPSDPFTGICISNVTIHLAAKAKKVPWTCTDVEGISSGVTPTPCSTLPDQGPEKTSLCNFPAESLPIDTVELQKCSYGINY 489          
BLAST of CV885064 vs. ExPASy Swiss-Prot
Match: PGLR_RHIRD (Polygalacturonase OS=Rhizobium radiobacter GN=pgl PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.971e-17
Identity = 61/178 (34.27%), Postives = 85/178 (47.75%), Query Frame = -2
Query:  351 TILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSG-WDQYGIAYGMPTKQLIIRRLTCISPFSAVIALGSEMSGGIQDVRAEDITAIDSESGVRIKT-AVGRGGFVKDIYVRRMTMKTMKWAFWITGSYGSHPDNNYD----------PHALPEIQNINYRDMVAENVTMAA 848
            TI+AP  SPNTDG NP+SC N  I       GDDC+AVK+G     G    +   + I  R   + P    + +GSEMSGG+ DV  ED   I ++ G+R+KT A   GG V +I +RR+ +  ++ A      Y    D + D              P +  I   D+   N+  AA
Sbjct:   62 TIIAPHDSPNTDGFNPESCRNVMISGVRFSVGDDCIAVKAGKRGPDGEDDHLAETRGITVRHCLMQPGHGGLVIGSEMSGGVHDVTVEDCDMIGTDRGLRLKTGARSGGGMVGNITMRRVLLDGVQTALSANAHYHCDADGHDDWVQSRNPAPVNDGTPFVDGITVEDVEIRNLAHAA 239          
BLAST of CV885064 vs. ExPASy Swiss-Prot
Match: PGLR2_CHAOB (Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.154e-14
Identity = 71/238 (29.83%), Postives = 111/238 (46.64%), Query Frame = -2
Query:  177 VIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFSAVI-ALGSEMS-GGIQDVRAEDITAIDSESGVRIKTAVGRGGFVKDIYVRRMTMKTMKWAFWITGSYGSHPDNNYDPHALPEIQNINYRDMVAENVTMAARLEGIAGD--PFTGICISNVTIELTN-KPKKLQWNCTD--ITGISSGVTPKPCE-LLPDHEPAQ 866
            V +QG+ I AP  SPNTDGI+  +     IE C I +GDDC+A+ +G           +  + I+ L C       I +LG + S   +  V       ID+++G+RIKT  G  G    I    + M   +    I   Y +      +  +  +IQ + Y+++   + T AA ++ +  D  P TGI +SNV+++LT+ KP     +C D    G  SG     C+ L P   P +
Sbjct:  217 VKIQGLKIKAPRDSPNTDGIDIFASKRFHIEKCVIGTGDDCIAIGTG-----------SSNITIKDLICGPGHGISIGSLGRDNSRAEVSHVHVNRAKFIDTQNGLRIKTWQGGSGLASYITYENVEMINSENPILINQFYCTSASACQNQRSAVQIQGVTYKNIHGTSAT-AAAIQLMCSDSVPCTGIQLSNVSLKLTSGKPA----SCVDKNARGFYSGRLIPTCKNLRPGPSPKE 438          
BLAST of CV885064 vs. ExPASy Swiss-Prot
Match: PGLR2_JUNAS (Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.039e-13
Identity = 77/274 (28.10%), Postives = 118/274 (43.07%), Query Frame = -2
Query:   57 VIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFSAVI-ALGSEMS-GGIQDVRAEDITAIDSESGVRIKTAVGRGGFVKDIYVRRMTMKTMKWAFWITGSYGSHPDNNYDPHALPEIQNINYRDMVAENVTMAARLEGIAGD--PFTGICISNVTIELTNKPKKLQWNCTDITGISSGVTPKPCELLPDHEPAQTTECNFPDNRLPVENMGVQMCSYKANYL*RELLRMCKGFQ 866
            V +QGI I AP  SPNTDGI+  +     IE C I +GDDCVAV +G           +  + I+ LTC       I +LG   S   +  V  +    ID+++G+RIKT  G  G    I    + M   +    I   Y +      +  +  +IQ++ ++++   + T AA ++ +  D  P + I +SNV ++LT+       N       ++ + P    L P   P +      P   L  E MG  + S   N         CKG Q
Sbjct:  218 VKIQGIKIKAPRDSPNTDGIDIFASKRFEIEKCTIGTGDDCVAVGTG-----------SSNITIKDLTCGPGHGMSIGSLGKGNSRSEVSFVHLDGAKFIDTQNGLRIKTWQGGSGLASHITYENVEMINAENPILINQFYCTSAAACKNQRSAVKIQDVTFKNIHGTSATTAA-IQLMCSDSVPCSNIKLSNVFLKLTSGKVATCVNKNANGYYTNPLNPSCKSLHPGRTPKELELHQKPTTLLMDEKMGASLNSSPPN-----CKNKCKGCQ 474          
BLAST of CV885064 vs. ExPASy Swiss-Prot
Match: PGLR6_ARATH (Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana GN=At2g43860 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.726e-12
Identity = 60/228 (26.32%), Postives = 107/228 (46.93%), Query Frame = -2
Query:  207 SSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFSAVI-ALG-SEMSGGIQDVRAEDITAIDSESGVRIKT-AVGRGGFVKDIYVRRMTMKTMKWAFWITGSYGSHPDNNYDPHALPEIQNINYRDM-VAENVTMAARLEGIAGDPFTGICISNVTIELTNKPKKLQWNCTDITGISSGVTP-KPC 875
            S++V + G+ + A   SPNTDGI+ +S  +  I +  I +GDDC+++  G           +  + I+ + C       I +LG +E   G+ +V   ++  + + +GVRIKT       F ++I  + + MK +K    I   Y  H         + ++ N+ Y D+    N  +A  L+     P TGI + +V +   ++P   Q +C +  G ++ V P  PC
Sbjct:  184 SNNVNIDGVKVSADENSPNTDGIHVESSHSVHITNSRIGTGDDCISIGPG-----------STNVFIQTIRCGPGHGISIGSLGRAEEEQGVDNVTVSNVDFMGTNNGVRIKTWGKDSNSFARNIVFQHINMKMVKNPIIIDQHYCLHKPCPKQESGV-KVSNVRYEDIHGTSNTEVAVLLDCSKEKPCTGIVMDDVNLVSVHRP--AQASCDNANGSANDVVPFTPC 397          
BLAST of CV885064 vs. ExPASy Swiss-Prot
Match: ADPG1_ARATH (Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.726e-12
Identity = 58/198 (29.29%), Postives = 95/198 (47.98%), Query Frame = -2
Query:  288 SSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFSAVI-ALGSEMSGG-IQDVRAEDITAIDSESGVRIKTAVGRGGFVKDIYVRRMTMKTMKWAFWITGSYGSHPDNNYDPHALPEIQNINYRDMVAENVT-MAARLEGIAGDPFTGICISNVTIE 872
            + V V  + I AP  SPNTDGI+  +  N R+ +  I +GDDC++++ G           T+ L I  LTC       I +LG + S   +  +  +     +S++GVRIKT  G  G  K+I  + + M+ +K    I   Y    D   D  +  +++N+ Y+++   + T +A  L      P  GI + NV I+
Sbjct:  224 NKVEVSNVEITAPGDSPNTDGIHITNTQNIRVSNSDIGTGDDCISIEDG-----------TQNLQIFDLTCGPGHGISIGSLGDDNSKAYVSGINVDGAKFSESDNGVRIKTYQGGSGTAKNIKFQNIRMENVKNPIIIDQDY-CDKDKCEDQESAVQVKNVVYKNISGTSATDVAITLNCSEKYPCQGIVLENVKIK 409          
BLAST of CV885064 vs. ExPASy Swiss-Prot
Match: PGLR2_CRYJA (Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.909e-11
Identity = 66/250 (26.40%), Postives = 113/250 (45.20%), Query Frame = -2
Query:  126 VIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFSAVI-ALGSEMS-GGIQDVRAEDITAIDSESGVRIKTAVGRGGFVKDIYVRRMTMKTMKWAFWITGSYGSHPDNNYDPHALPEIQNINYRDMVAENVTMAA-RLEGIAGDPFTGICISNVTIELTNKPKKLQWNCTDITGISSGVTPKPCELLPDHEPAQTTECNFPDNRLPVENMG 866
            V + GI+I AP  SPNTDGI+  +  N  ++   I +GDDCVA+ +G           +  ++I  L C       I +LG E S   +  V       ID+++G+RIKT  G  G    I    + M   +    I   Y +      +  +  +IQ++ Y+++   + T AA +L+     P   I +S+++++LT+       N  +  G  SG     C+ L      + ++ +     + V+NMG
Sbjct:  217 VKIIGISITAPRDSPNTDGIDIFASKNFHLQKNTIGTGDDCVAIGTG-----------SSNIVIEDLICGPGHGISIGSLGRENSRAEVSYVHVNGAKFIDTQNGLRIKTWQGGSGMASHIIYENVEMINSENPILINQFYCTSASACQNQRSAVQIQDVTYKNIRGTSATAAAIQLKCSDSMPCKDIKLSDISLKLTSGKIASCLN-DNANGYFSGHVIPACKNLSPSAKRKESKSHKHPKTVMVKNMG 454          
BLAST of CV885064 vs. ExPASy Swiss-Prot
Match: PGLR5_ARATH (Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana GN=At1g80170 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.252e-11
Identity = 57/224 (25.45%), Postives = 98/224 (43.75%), Query Frame = -2
Query:  207 VIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFSAVI-ALGSEMS-GGIQDVRAEDITAIDSESGVRIKTAVGRGGFVKDIYVRRMTMKTMKWAFWITGSYGSHPDNNYDPHALPEIQNINYRDMVAENVTM-AARLEGIAGDPFTGICISNVTIELTNKPKKLQWNCTDITGISSG-VTPKPC 866
            V + G+ ++AP TSPNTDGI+        I++  + +GDDC+++              + Q+ I  + C       I +LG   S   ++D+  +     D+ +GVRIKT  G  G V  I  R + M  +     I   Y        +  +   I+NI++  +   + +  A ++      P   I + ++ +E +N     +  C +  G SSG V P PC
Sbjct:  211 VTISGLKVIAPATSPNTDGIHISVSRGIVIDNTTVSTGDDCISIVKN-----------STQISISNIICGPGHGISIGSLGKSKSWEEVRDITVDTAIISDTANGVRIKTWQGGSGLVSKIIFRNIKMNNVSNPIIIDQYYCDSRKPCANQTSAISIENISFVHVRGTSASKEAIKISCSDSSPCRNILLQDIDLEPSNGDGFTESFCWEAYGSSSGQVYPPPC 423          
BLAST of CV885064 vs. ExPASy Swiss-Prot
Match: ADPG2_ARATH (Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN=ADPG2 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.252e-11
Identity = 58/225 (25.78%), Postives = 100/225 (44.44%), Query Frame = -2
Query:  207 SSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFSAVI-ALGSEMSGG-IQDVRAEDITAIDSESGVRIKTAVGRGGFVKDIYVRRMTMKTMKWAFWITGSYGSHPDNNYDPHALPEIQNINYRDMVAENVTMAARLEGIAGD-PFTGICISNVTIELTNKPKKLQWNCTDITGISSGVTPKPC 872
            S+V V  + + AP  SPNTDGI+  +  N R+ +  I +GDDC++++SG           ++ + I  +TC       I +LG + S   +  V  +      +++GVRIKT  G  G   +I  + + M  +K    I   Y        +  A+ +++N+ YRD+   + +  A     + + P  GI +  V I      K  +  CT+   +  G     C
Sbjct:  224 SNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSESIIGTGDDCISIESG-----------SQNVQINDITCGPGHGISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQMDNVKNPIIIDQDYCDKSKCTTEKSAV-QVKNVVYRDISGTSASENAITFNCSKNYPCQGIVLDRVNI------KGGKATCTNANVVDKGAVLPQC 430          
BLAST of CV885064 vs. ExPASy Swiss-Prot
Match: PGLR_SOLLC (Polygalacturonase-2 OS=Solanum lycopersicum GN=PG2 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.473e-11
Identity = 49/199 (24.62%), Postives = 93/199 (46.73%), Query Frame = -2
Query:  291 SSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFSAVIALGSEMSGG----IQDVRAEDITAIDSESGVRIKTAVGRGGFVKDIYVRRMTMKTMKWAFWITGSYGSHPDNNYDPHALPEIQNINYRDMVAENVT-MAARLEGIAGDPFTGICISNVTI 872
            ++V+   + I A   SPNTDG++  +    +I D  I +GDDC+++ SG           ++ +    +TC       I++GS  SG     + +V   +   I +E+GVRIKT  G  G   +I    + M+ +K+   I  +Y    +      +  +++N+ Y ++   + T +A + +     P  GI + N+ +
Sbjct:  230 TNVVASNLMINASAKSPNTDGVHVSNTQYIQISDTIIGTGDDCISIVSG-----------SQNVQATNITCGPGHG--ISIGSLGSGNSEAYVSNVTVNEAKIIGAENGVRIKTWQGGSGQASNIKFLNVEMQDVKYPIIIDQNYCDRVEPCIQQFSAVQVKNVVYENIKGTSATKVAIKFDCSTNFPCEGIIMENINL 415          
The following BLAST results are available for this feature:
BLAST of CV885064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
PGLR_VITVI5.376e-12378.33Probable polygalacturonase OS=Vitis vinifera GN=GS... [more]
PGLR_RHIRD3.971e-1734.27Polygalacturonase OS=Rhizobium radiobacter GN=pgl ... [more]
PGLR2_CHAOB9.154e-1429.83Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=... [more]
PGLR2_JUNAS2.039e-1328.10Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 ... [more]
PGLR6_ARATH1.726e-1226.32Probable polygalacturonase At2g43860 OS=Arabidopsi... [more]
ADPG1_ARATH1.726e-1229.29Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN... [more]
PGLR2_CRYJA1.909e-1126.40Polygalacturonase OS=Cryptomeria japonica PE=1 SV=... [more]
PGLR5_ARATH4.252e-1125.45Probable polygalacturonase At1g80170 OS=Arabidopsi... [more]
ADPG2_ARATH4.252e-1125.78Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN... [more]
PGLR_SOLLC9.473e-1124.62Polygalacturonase-2 OS=Solanum lycopersicum GN=PG2... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012D04_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T7_D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885064 ID=CV885064; Name=CV885064; organism=Citrus sinensis; type=EST; length=885bp
TTTTTTTTTTAGTGAAGTATAGGTTTGGTGATTTATCATATCACTGCAAA
TAGGGACTGAAATCCCTTACACATACGTAACAATTCGCGTTACAAGTAAT
TTGCTTTGTAGGAGCACATTTGAACTCCCATGTTCTCAACGGGCAATCTG
TTGTCAGGAAAATTACATTCCGTGGTCTGCGCCGGTTCGTGATCTGGCAA
CAATTCACATGGTTTGGGAGTCACACCACTCGAAATCCCGGTAATATCAG
TGCAGTTCCACTGAAGTTTCTTAGGCTTGTTGGTTAGCTCAATGGTCACA
TTTGATATGCAAATTCCAGTAAAAGGATCCCCAGCAATTCCTTCCAATCT
AGCTGCCATTGTTACATTCTCAGCAACCATGTCACGATAATTGATATTCT
GAATCTCAGGAAGTGCATGCGGATCATAGTTATTGTCAGGATGAGAACCA
TAACTGCCTGTAATCCAAAATGCCCATTTCATGGTTTTCATTGTCATTCT
TCTCACATATATGTCCTTCACAAAACCTCCTCTTCCAACAGCAGTTTTGA
TCCTGACACCTGATTCAGAATCAATGGCTGTGATATCTTCTGCCCGTACG
TCCTGAATCCCACCGGACATCTCACTTCCCAGTGCAATCACTGCACTGAA
TGGAGAAATGCACGTTAGGCGTCTGATAATAAGCTGCTTTGTTGGCATCC
CGTAAGCAATACCATACTGATCCCAGCCACTTTTAACTGCTACACAGTCA
TCCCCTGATACAATGTAGCAGTCCTCTATTCTGGTGTTTGTGCAAGAATC
AGGATTAATACCATCAGTGTTTGGAGATGTCACCGGCGCTAGGATCGTTA
TGCCTTGAACTATGACACTACTGCTATAAACAGGA
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