CV885063

Overview
NameCV885063
Unique NameCV885063
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7087 contig Csv1_Contig7087:99..935. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV885063 vs. ExPASy Swiss-Prot
Match: PGLR_VITVI (Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1)

HSP 1 Score: 359.377 bits (921), Expect = 1.457e-98
Identity = 169/225 (75.11%), Postives = 196/225 (87.11%), Query Frame = 1
Query:  163 LNTNGVESRKARNSDWFEYSAISCRAHSASLEEFGGVGDGTTSNTKAFKAAIDHLSRFQSEGGSQLFVPPGKWLTGSFNLTSHFTLFLHKDAVLLASQDEKEWPVIEPLPSYGRGRDTEGGRYSSLIFGTNLTDVVITGDNGTIDGQGEPWWRKFRAGELKYTRPYLIEIMHSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTN 837
            L+ +  E RK R  +  EYSAISCRAHSASL +FGGVGDG T NTKAF+ A+  LS++ SEGG+QL+VP GKWLTGSF+LTSHFTLFLH+DAVLLASQD  +WPVI+PLPSYGRGRD   GRY+SLIFGTNLTDV+ITGDNGTIDGQG  WW++F  G+LKYTRPYLIE+M+S +IQISNLTL+NSPSWNVHPVYS ++++QGITILAPV SPNTDGINPDSCTN
Sbjct:   35 LSVSRGECRKGRILEALEYSAISCRAHSASLVDFGGVGDGQTLNTKAFQDAVSELSKYGSEGGAQLYVPAGKWLTGSFSLTSHFTLFLHRDAVLLASQDISQWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIITGDNGTIDGQGGLWWQRFHGGKLKYTRPYLIELMYSADIQISNLTLLNSPSWNVHPVYSRNILIQGITILAPVRSPNTDGINPDSCTN 259          
BLAST of CV885063 vs. ExPASy Swiss-Prot
Match: PGLR3_ARATH (Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.445e-13
Identity = 60/207 (28.99%), Postives = 97/207 (46.86%), Query Frame = 1
Query:  238 AHSASLEEFGGVGDGTTSNTKAFKAAIDHLSRFQSEGGSQLFVPPGKWLT-------GSFNLTSHFTLFLHKDAVLLASQDEKEWPVIEPLPSYGRGRDTEGGRYSSLIFGTNLTDVVITGDNGTIDGQGEPWWRKFRAGELKYTRPYLIEIMHSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTN 837
            +++  + +FG VGDG T +++AF  A + +      G  Q  VP G           GS   T  F   L K    L +  +  W               +G +   ++F T++  +VI GD G I+GQG  WW      E K +RP  ++     N+++S LT ++SP  ++H    + V +  + I AP +SPNTDGI+  + +N
Sbjct:   21 SNALDVTQFGAVGDGVTDDSQAFLKAWEAVC--SGTGDGQFVVPAGMTFMLQPLKFQGSCKSTPVFVQMLGK----LVAPSKGNW---------------KGDKDQWILF-TDIEGLVIEGD-GEINGQGSSWW------EHKGSRPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSN 198          
BLAST of CV885063 vs. ExPASy Swiss-Prot
Match: PGLR1_PECCC (Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum GN=peh PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.352e-11
Identity = 63/179 (35.20%), Postives = 83/179 (46.37%), Query Frame = 1
Query:  340 SEGGSQLFVPPGKWLTGSFNLTSHFTLFLHKDAVLLASQDEKEWPVIEPLPSYGRGRDTEGGRYSSLIFGTNLTDVVITGDNGTIDGQGE--------PWW---RKFRAGELKYTRPYLIEIMHSQNIQISNLTLINSPSWNVHPVYS--SSVIVQGITILAPVTSPNTDGINPDSCTN 837
            S G S +F      L+G  +L S  +L + K   L A  + K +   E  PS     DT G    + I  T+ T+  I G  GTIDGQG          WW      +  +LK   P LI+I  S+N  + N++LINSP  N H V+S          TI  P T+ NTDGI+P S  N
Sbjct:   71 SAGSSSVF------LSGPLSLPSGVSLLIDKGVTLRAVNNAKSF---ENAPSSCGVVDTNGKGCDAFITATSTTNSGIYGP-GTIDGQGGVKLQDKKVSWWDLAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINSP--NFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKN 237          
BLAST of CV885063 vs. ExPASy Swiss-Prot
Match: PGLR2_CHAOB (Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.766e-11
Identity = 58/203 (28.57%), Postives = 90/203 (44.33%), Query Frame = 1
Query:  250 SLEEFGGVGDGTTSNTKAFKAAIDHLSRFQSEGGSQLFVPPGKWLTGS---FNLTSHFTLFLHKDAVLLASQDEKEWPVIEPLPSYGRGRDTEGGRYSSLIFGTNLTDVVITGDNGTIDGQGEPWWRKFRAGELKYT----------RPYLIEIMHSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGIN 819
            ++E++G VGDG   +T+AF    +   +   +  + L VP  K    +   F       L    D  ++A  D   W   +    + +                 LTD  + G  G IDGQG+ WW    AG+ K            RP  I+I +S+++ +  LTL+NSP +++       V +QG+ I AP  SPNTDGI+
Sbjct:   60 NVEQYGAVGDGKHDSTEAFATTWNAACK---KASAVLLVPANKKFFVNNLVFRGPCQPHLSFKVDGTIVAQPDPARWKNSKIWLQFAQ-----------------LTDFNLMG-TGVIDGQGQQWW----AGQCKVVNGRTVCNDRNRPTAIKIDYSKSVTVKELTLMNSPEFHLVFGECEGVKIQGLKIKAPRDSPNTDGID 237          
The following BLAST results are available for this feature:
BLAST of CV885063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PGLR_VITVI1.457e-9875.11Probable polygalacturonase OS=Vitis vinifera GN=GS... [more]
PGLR3_ARATH1.445e-1328.99Probable polygalacturonase At3g15720 OS=Arabidopsi... [more]
PGLR1_PECCC1.352e-1135.20Endo-polygalacturonase OS=Pectobacterium carotovor... [more]
PGLR2_CHAOB1.766e-1128.57Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012D04_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T3_D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885063 ID=CV885063; Name=CV885063; organism=Citrus sinensis; type=EST; length=837bp
GGAGTTCTTCCCCTATATAAATCGTAAACAAGCTTCAAAGTCCCTAGACT
CTTTGAACAAGCCAAGCCAGAGCAACCCATCTTTTATTCAATGGGGTCGT
TAAAAACTGCCAAAAGAACTCAGGTTATTTGTATCATATTACTAGTTGGT
ATTATCATCTCGTTAAATACAAATGGAGTTGAGAGTAGAAAAGCCCGAAA
TTCAGACTGGTTTGAGTACTCAGCAATAAGTTGCAGAGCTCACAGCGCAT
CACTGGAGGAATTCGGAGGCGTTGGCGATGGAACCACATCAAACACAAAG
GCTTTTAAGGCCGCAATTGATCATTTGAGTCGGTTCCAGTCAGAAGGAGG
GTCCCAACTGTTTGTTCCTCCTGGAAAATGGCTGACTGGAAGCTTCAATC
TCACCAGCCATTTCACTTTGTTTCTTCACAAGGATGCTGTTCTTCTTGCT
TCCCAGGATGAGAAAGAATGGCCTGTGATCGAGCCTCTGCCATCCTACGG
TAGAGGAAGGGACACAGAAGGTGGAAGGTATAGCAGTCTTATTTTTGGAA
CCAACCTCACTGATGTTGTCATAACAGGGGACAATGGAACTATTGATGGT
CAGGGTGAGCCCTGGTGGCGAAAATTTCGTGCGGGAGAGCTAAAGTATAC
CCGTCCATACCTTATTGAAATCATGCACTCACAGAATATTCAAATATCCA
ACCTCACATTGATCAATTCCCCATCCTGGAATGTTCATCCTGTTTATAGC
AGTAGTGTCATAGTTCAAGGCATAACGATCCTAGCGCCGGTGACATCTCC
AAACACTGATGGTATTAATCCTGATTCTTGCACAAAC
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