CV885062

Overview
NameCV885062
Unique NameCV885062
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length928
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV885062_ssr370 microsatellite CV885062_ssr370:370..381. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CV885062 vs. ExPASy Swiss-Prot
Match: Y1765_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07650 OS=Arabidopsis thaliana GN=At1g07650 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 5.330e-36
Identity = 74/165 (44.85%), Postives = 103/165 (62.42%), Query Frame = -3
Query:  417 IVHRDMRPNNILLTHDFEPLVGDFGLARWQXDGDMGVETRVMGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQCLTEWARPLLEEYAIDELVDPRLGNHYSEHEVYCMLHAASLCIRRDPHSRPRMSQVLRILEGDTVIDTYMSTPGY 911
            IVHRD++ +N+LL  D    + DFGLA+   DG+  + TR+ GT GY+APEYA  G +TEKADVYSFGVV +E+V+G+   +    +    L +WA  L E  ++ ELVDP L + YSE E   ML+ A +C    P  RP MSQV+ ++EG T +   +S P +
Sbjct:  801 IVHRDIKASNVLLDKDLNAKISDFGLAKLNDDGNTHISTRIAGTIGYMAPEYAMRGYLTEKADVYSFGVVALEIVSGKSNTNFRPTEDFVYLLDWAYVLQERGSLLELVDPTLASDYSEEEAMLMLNVALMCTNASPTLRPTMSQVVSLIEGKTAMQELLSDPSF 965          
BLAST of CV885062 vs. ExPASy Swiss-Prot
Match: PBS1_ARATH (Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.819e-34
Identity = 77/175 (44.00%), Postives = 105/175 (60.00%), Query Frame = -3
Query:  393 IVHRDMRPNNILLTHDFEPLVGDFGLARWQXDGDMG-VETRVMGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQCLTEWARPLL-EEYAIDELVDPRLGNHYSEHEVYCMLHAASLCIRRDPHSRPRMSQVLRILEGDTVIDTYMSTPGYDVGSRSGR 911
            +++RD + +NILL   F P + DFGLA+    GD   V TRVMGT+GY APEYA +GQ+T K+DVYSFGVV +EL+TGRKA+D   P G+Q L  WARPL  +     +L DPRL   +    +Y  L  AS+CI+    +RP ++ V+  L       +Y++   YD      R
Sbjct:  209 VIYRDFKSSNILLDEGFHPKLSDFGLAKLGPTGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRKAIDSEMPHGEQNLVAWARPLFNDRRKFIKLADPRLKGRFPTRALYQALAVASMCIQEQAATRPLIADVVTAL-------SYLANQAYDPSKDDSR 376          
BLAST of CV885062 vs. ExPASy Swiss-Prot
Match: SERK2_ARATH (Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana GN=SERK2 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.988e-34
Identity = 72/161 (44.72%), Postives = 108/161 (67.08%), Query Frame = -3
Query:  435 IVHRDMRPNNILLTHDFEPLVGDFGLARWQXDGDMGVETRVMGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQ--CLTEWARPLLEEYAIDELVDPRLGNHYSEHEVYCMLHAASLCIRRDPHSRPRMSQVLRILEGDTVIDTY 911
            I+HRD++  NILL  +FE +VGDFGLAR     D  V T V GT G++APEY  +G+ +EK DV+ +G++L+EL+TG++A DL R        L +W + LL+E  ++ LVDP L ++Y+E EV  ++  A LC +  P  RP+MS+V+R+LEGD + + +
Sbjct:  428 IIHRDVKAANILLDEEFEAVVGDFGLARLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQSNYTEAEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGDGLAEKW 588          
BLAST of CV885062 vs. ExPASy Swiss-Prot
Match: Y2197_ARATH (Probable protein kinase At2g41970 OS=Arabidopsis thaliana GN=At2g41970 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.111e-33
Identity = 74/152 (48.68%), Postives = 99/152 (65.13%), Query Frame = -3
Query:  459 IVHRDMRPNNILLTHDFEPLVGDFGLARWQXDGDMGVE-TRVMGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQCLTEWARPLLEEYAIDELVDPRLGNHYSEHEVYCMLHAASLCIRRDPHSRPRMSQVLRILE 911
            IVHRD+R +N+LL  DF   + DF L     D    +  TRV+GTFGY APEYA +GQIT+K+DVYSFGVVL+EL+TGRK VD   PKGQQ L  WA P L E  + + +DP+L N +    V  +   A+LC++ +   RP M+ V++ L+
Sbjct:  200 IVHRDVRSSNVLLFDDFVAKMADFNLTNASSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCIDPKLNNDFPPKAVAKLAAVAALCVQYEADFRPNMTIVVKALQ 351          
BLAST of CV885062 vs. ExPASy Swiss-Prot
Match: SERK1_ARATH (Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 4.223e-33
Identity = 70/161 (43.48%), Postives = 106/161 (65.84%), Query Frame = -3
Query:  435 IVHRDMRPNNILLTHDFEPLVGDFGLARWQXDGDMGVETRVMGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQ--CLTEWARPLLEEYAIDELVDPRLGNHYSEHEVYCMLHAASLCIRRDPHSRPRMSQVLRILEGDTVIDTY 911
            I+HRD++  NILL  +FE +VGDFGLA+     D  V T V GT G++APEY  +G+ +EK DV+ +G++L+EL+TG++A DL R        L +W + LL+E  ++ LVDP L  +Y E E+  ++  A LC +  P  RP+MS+V+R+LEGD + + +
Sbjct:  425 IIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQTNYEERELEQVIQVALLCTQGSPMERPKMSEVVRMLEGDGLAEKW 585          
BLAST of CV885062 vs. ExPASy Swiss-Prot
Match: Y2296_ARATH (Probable receptor-like protein kinase At2g42960 OS=Arabidopsis thaliana GN=At2g42960 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 5.515e-33
Identity = 69/153 (45.10%), Postives = 99/153 (64.71%), Query Frame = -3
Query:  453 IVHRDMRPNNILLTHDFEPLVGDFGLARWQXDGDMGVETRVMGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQCLTEWARPLLEEYAIDELVDPRLGNHYSEHEVYCMLHAASLCIRRDPHSRPRMSQVLRILEGD 911
            +VHRD++ +NIL+  +F   + DFGLA+    G+  + TRVMGTFGY+APEYA +G + EK+D+YSFGV+L+E +TGR  VD  RP  +  L EW + ++     +E+VDPRL    S+  +   L  +  C+  +   RPRMSQV R+LE D
Sbjct:  305 VVHRDIKASNILIDDEFNAKLSDFGLAKLLDSGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYGRPANEVNLVEWLKMMVGTRRAEEVVDPRLEPRPSKSALKRALLVSLRCVDPEAEKRPRMSQVARMLESD 457          
BLAST of CV885062 vs. ExPASy Swiss-Prot
Match: Y1534_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53420 OS=Arabidopsis thaliana GN=At1g53420 PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 9.408e-33
Identity = 67/157 (42.68%), Postives = 96/157 (61.15%), Query Frame = -3
Query:  441 IVHRDMRPNNILLTHDFEPLVGDFGLARWQXDGDMGVETRVMGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQCLTEWARPLLEEYAIDELVDPRLGNHYSEHEVYCMLHAASLCIRRDPHSRPRMSQVLRILEGDTVID 911
            IVHRD++  N+LL     P + DFGLA+   +    + TR+ GTFGY+APEYA  G +T+KADVYSFG+V +E+V GR             L +W   L E+  + ELVDPRLG+ Y+  E   M+  A +C   +P  RP MS+V+++LEG  +++
Sbjct:  746 IVHRDIKATNVLLDKQLNPKISDFGLAKLDEEDSTHISTRIAGTFGYMAPEYAMRGHLTDKADVYSFGIVALEIVHGRSNKIERSKNNTFYLIDWVEVLREKNNLLELVDPRLGSEYNREEAMTMIQIAIMCTSSEPCERPSMSEVVKMLEGKKMVE 902          
BLAST of CV885062 vs. ExPASy Swiss-Prot
Match: Y2239_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g23950 OS=Arabidopsis thaliana GN=At2g23950 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.229e-32
Identity = 72/163 (44.17%), Postives = 106/163 (65.03%), Query Frame = -3
Query:  426 IVHRDMRPNNILLTHDFEPLVGDFGLARWQXDGDMGVETRVMGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQ-CLTEWARPLLEEYAIDELVDPRLGNHYSEHEVYCMLHAASLCIRRDPHSRPRMSQVLRILEGDTVIDTYMST 911
            I+HRD++  NILL   FE +VGDFGLA+     D  V T V GT G++APEY  +GQ +EK DV+ FG++L+EL+TG +A++  +   Q+  + EW R L +E  ++ELVD  LG  Y   EV  ML  A LC +  P  RP+MS+V+++LEGD + + + ++
Sbjct:  418 IIHRDVKAANILLDEYFEAVVGDFGLAKLLNHEDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMRALEFGKSVSQKGAMLEWVRKLHKEMKVEELVDRELGTTYDRIEVGEMLQVALLCTQFLPAHRPKMSEVVQMLEGDGLAERWAAS 580          
BLAST of CV885062 vs. ExPASy Swiss-Prot
Match: BAK1_ARATH (BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1 PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.605e-32
Identity = 70/161 (43.48%), Postives = 105/161 (65.22%), Query Frame = -3
Query:  435 IVHRDMRPNNILLTHDFEPLVGDFGLARWQXDGDMGVETRVMGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQ--CLTEWARPLLEEYAIDELVDPRLGNHYSEHEVYCMLHAASLCIRRDPHSRPRMSQVLRILEGDTVIDTY 911
            I+HRD++  NILL  +FE +VGDFGLA+     D  V T V GT G++APEY  +G+ +EK DV+ +GV+L+EL+TG++A DL R        L +W + LL+E  ++ LVD  L  +Y + EV  ++  A LC +  P  RP+MS+V+R+LEGD + + +
Sbjct:  412 IIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGDGLAERW 572          
BLAST of CV885062 vs. ExPASy Swiss-Prot
Match: RLCK7_ARATH (Probable serine/threonine-protein kinase RLCKVII OS=Arabidopsis thaliana GN=At1g07870 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.737e-32
Identity = 73/173 (42.20%), Postives = 110/173 (63.58%), Query Frame = -3
Query:  399 IVHRDMRPNNILLTHDFEPLVGDFGLARWQXDGDMG-VETRVMGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQCLTEWARPLLEEYA-IDELVDPRLGNHYSEHEVYCMLHAASLCIRRDPHSRPRMSQVLRILEGDTVIDTYMSTPGYDVGSRS 911
            +++RD++ +NILL  D++P + DFGLA+    GD   V TRVMGT+GY AP+YA +GQ+T K+D+YSFGVVL+EL+TGRKA+D  + +  Q L  WARPL ++     ++VDP L   Y    +Y  L  +++C++  P  RP +S V+  L        ++++  YD  S S
Sbjct:  226 VIYRDLKCSNILLGEDYQPKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDNTKTRKDQNLVGWARPLFKDRRNFPKMVDPLLQGQYPVRGLYQALAISAMCVQEQPTMRPVVSDVVLAL-------NFLASSKYDPNSPS 391          
The following BLAST results are available for this feature:
BLAST of CV885062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
Y1765_ARATH5.330e-3644.85Probable LRR receptor-like serine/threonine-protei... [more]
PBS1_ARATH3.819e-3444.00Serine/threonine-protein kinase PBS1 OS=Arabidopsi... [more]
SERK2_ARATH4.988e-3444.72Somatic embryogenesis receptor kinase 2 OS=Arabido... [more]
Y2197_ARATH1.111e-3348.68Probable protein kinase At2g41970 OS=Arabidopsis t... [more]
SERK1_ARATH4.223e-3343.48Somatic embryogenesis receptor kinase 1 OS=Arabido... [more]
Y2296_ARATH5.515e-3345.10Probable receptor-like protein kinase At2g42960 OS... [more]
Y1534_ARATH9.408e-3342.68Probable LRR receptor-like serine/threonine-protei... [more]
Y2239_ARATH1.229e-3244.17Probable LRR receptor-like serine/threonine-protei... [more]
BAK1_ARATH1.605e-3243.48BRASSINOSTEROID INSENSITIVE 1-associated receptor ... [more]
RLCK7_ARATH2.737e-3242.20Probable serine/threonine-protein kinase RLCKVII O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012D03_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T7_D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885062 ID=CV885062; Name=CV885062; organism=Citrus sinensis; type=EST; length=928bp
ATACTCTCAGCTTCCTCCATTTTTTCGAAAGAATTACAAAAGCTTAACTT
TGCCTACTTTCCCTACCACTATACATGAGCAAAATATAGATGGACATTGG
GGAAAAAATAGAAAGAACCTAGAACTGGGTAAAAGGGAAAAAGGGGATTA
CAAAAGGACCAAAATACGTATTTAGCAGAATACTAGTTGATATGAAATAC
TAGTTGATATGAAAGGTAAGCTCTTTACAGATCATTTTCGCGGGAGGTCC
TTCTGGCCTTATCCCTTTCCCAAAAGGCTGCCTTTAGTGAATCAAGGGGG
AGCTTCCTACCGAATCCTTCCAAAGCCTCATTCATCAAGGGACCGCTATA
AGGTAGTTGCTGTTGCTGATGCTGCTGCTGCTCTACCCAGATCCGTCCAC
TCCGGCTGCCAACATCATACCCAGGTGTTGACATGTAAGTGTCTATGACC
GTGTCACCTTCCAATATGCGAAGCACCTGTGACATGCGGGGCCTGGAATG
AGGATCGCGCCTTATACACAAAGATGCAGCATGAAGCATGCAATATACTT
CATGTTCAGAATAGTGATTCCCTAGCCTTGGGTCAACCAGTTCATCTATA
GCATATTCTTCAAGAAGCGGACGTGCCCATTCGGTAAGACACTGTTGGCC
CTTTGGTCGGTTGAGGTCCACTGCTTTTCGTCCGGTAACAAGCTCAACTA
ATACCACACCAAATGAATAGACATCAGCTTTTTCAGTAATCTGGCCACTT
TGAGCATATTCCGGCGCCAAATACCCAAATGTTCCCATTACTCTTGTTTC
CACACCCATGTCACCATCANGCTGCCACCTTGCAAGGCCAAAATCTCCAA
CCAGTGGTTCAAAATCATGGGTGAGAAGGATGTTATTTGGTCGCATGTCA
CGATGCACAATGCAGCCCACTCTGCATT
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