EH406523

Overview
NameEH406523
Unique NameEH406523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length481
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH406523 vs. ExPASy Swiss-Prot
Match: RBD2A_ARATH (Ras-related protein RABD2A OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3)

HSP 1 Score: 132.494 bits (332), Expect = 9.458e-31
Identity = 64/80 (80.00%), Postives = 70/80 (87.50%), Query Frame = 2
Query:    5 DLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCCST 244
            DLT+ + + YETAKAFADEIGIPFMETSAKD+ NVEQAFMAM+A IK RMASQPA NNARPPTVQI+GQPV QK  CCST
Sbjct:  124 DLTENRAIPYETAKAFADEIGIPFMETSAKDATNVEQAFMAMSASIKERMASQPAGNNARPPTVQIRGQPVAQKNGCCST 203          
BLAST of EH406523 vs. ExPASy Swiss-Prot
Match: YPTM2_MAIZE (GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.156e-28
Identity = 62/80 (77.50%), Postives = 70/80 (87.50%), Query Frame = 2
Query:    5 DLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCCST 244
            DLT  KVV+ ETAKAFADE+GIPFMETSAK++ NV+QAFMAM A IK+RMASQPA  NARP TVQI+GQPVNQK SCCS+
Sbjct:  124 DLTANKVVATETAKAFADEMGIPFMETSAKNATNVQQAFMAMAASIKDRMASQPAAANARPATVQIRGQPVNQKTSCCSS 203          
BLAST of EH406523 vs. ExPASy Swiss-Prot
Match: RIC1_ORYSJ (Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 8.286e-27
Identity = 55/80 (68.75%), Postives = 67/80 (83.75%), Query Frame = 2
Query:    2 CDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCCS 241
            CDL + +VVSYE  KA ADEIGIPF+ETSAKD+ NVE+AFM M  +IKNRMASQPA N ++P TVQ++GQPV Q++SCCS
Sbjct:  123 CDLAENRVVSYEAGKALADEIGIPFLETSAKDATNVEKAFMTMAGEIKNRMASQPATNASKPATVQMRGQPVAQQSSCCS 202          
BLAST of EH406523 vs. ExPASy Swiss-Prot
Match: YPTC1_CHLRE (GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.048e-21
Identity = 52/79 (65.82%), Postives = 61/79 (77.22%), Query Frame = 2
Query:    5 DLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQ-IKGQPVNQKASCC 238
            DLT KKVV Y  AKAFADEIGIPF+ETSAK++ NVEQAFM M A+IKNRMASQP    A  P V+  +G+P+N K+S C
Sbjct:  124 DLTSKKVVEYSVAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQPIPTKAGGPVVRPQEGKPINSKSSSC 202          
BLAST of EH406523 vs. ExPASy Swiss-Prot
Match: YPTV1_VOLCA (GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.335e-21
Identity = 51/79 (64.56%), Postives = 61/79 (77.22%), Query Frame = 2
Query:    5 DLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQ-IKGQPVNQKASCC 238
            DLT KKVV Y+ AKAFADEIGIPF+ETSAK++ NVEQAFM M A+IKNRMASQP       P V+  +G+P+N K+S C
Sbjct:  124 DLTGKKVVDYQAAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQPVPPKPGGPVVRPTEGKPINNKSSSC 202          
BLAST of EH406523 vs. ExPASy Swiss-Prot
Match: RABD1_ARATH (Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.122e-18
Identity = 45/80 (56.25%), Postives = 58/80 (72.50%), Query Frame = 2
Query:    5 DLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMN-NARPPTVQIKGQPVNQ-KASCC 238
            D+ + KVVS ET +A ADE+GIPF+ETSAKDS+NVEQAF+ +  +IK +M SQ   N  + P TVQ+KGQP+ Q    CC
Sbjct:  124 DMVESKVVSTETGRALADELGIPFLETSAKDSINVEQAFLTIAGEIKKKMGSQTNANKTSGPGTVQMKGQPIQQNNGGCC 203          
BLAST of EH406523 vs. ExPASy Swiss-Prot
Match: RAB1A_RAT (Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 2.046e-17
Identity = 43/79 (54.43%), Postives = 51/79 (64.56%), Query Frame = 2
Query:    2 CDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCC 238
            CDLT KKVV Y TAK FAD +GIPF+ETSAK++ NVEQ+FM M A+IK RM        A    V+I+  PV Q    C
Sbjct:  126 CDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGGGC 204          
BLAST of EH406523 vs. ExPASy Swiss-Prot
Match: RAB1A_PIG (Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 2.046e-17
Identity = 43/79 (54.43%), Postives = 51/79 (64.56%), Query Frame = 2
Query:    2 CDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCC 238
            CDLT KKVV Y TAK FAD +GIPF+ETSAK++ NVEQ+FM M A+IK RM        A    V+I+  PV Q    C
Sbjct:  126 CDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGGGC 204          
BLAST of EH406523 vs. ExPASy Swiss-Prot
Match: RAB1A_MOUSE (Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 2.046e-17
Identity = 43/79 (54.43%), Postives = 51/79 (64.56%), Query Frame = 2
Query:    2 CDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCC 238
            CDLT KKVV Y TAK FAD +GIPF+ETSAK++ NVEQ+FM M A+IK RM        A    V+I+  PV Q    C
Sbjct:  126 CDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGGGC 204          
BLAST of EH406523 vs. ExPASy Swiss-Prot
Match: RAB1A_HUMAN (Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 2.046e-17
Identity = 43/79 (54.43%), Postives = 51/79 (64.56%), Query Frame = 2
Query:    2 CDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCC 238
            CDLT KKVV Y TAK FAD +GIPF+ETSAK++ NVEQ+FM M A+IK RM        A    V+I+  PV Q    C
Sbjct:  126 CDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGGGC 204          
The following BLAST results are available for this feature:
BLAST of EH406523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
RBD2A_ARATH9.458e-3180.00Ras-related protein RABD2A OS=Arabidopsis thaliana... [more]
YPTM2_MAIZE1.156e-2877.50GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=... [more]
RIC1_ORYSJ8.286e-2768.75Ras-related protein RIC1 OS=Oryza sativa subsp. ja... [more]
YPTC1_CHLRE1.048e-2165.82GTP-binding protein YPTC1 OS=Chlamydomonas reinhar... [more]
YPTV1_VOLCA2.335e-2164.56GTP-binding protein yptV1 OS=Volvox carteri GN=YPT... [more]
RABD1_ARATH4.122e-1856.25Ras-related protein RABD1 OS=Arabidopsis thaliana ... [more]
RAB1A_RAT2.046e-1754.43Ras-related protein Rab-1A OS=Rattus norvegicus GN... [more]
RAB1A_PIG2.046e-1754.43Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A ... [more]
RAB1A_MOUSE2.046e-1754.43Ras-related protein Rab-1A OS=Mus musculus GN=Rab1... [more]
RAB1A_HUMAN2.046e-1754.43Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3AF07FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406523 ID=EH406523; Name=EH406523; organism=Citrus sinensis; type=EST; length=481bp
GTGTGATCTCACCGATAAGAAGGTTGTCTCTTATGAAACAGCGAAGGCAT
TTGCTGATGAAATTGGCATCCCGTTCATGGAGACCAGCGCAAAGGATTCT
ATGAACGTGGAACAAGCTTTTATGGCTATGACTGCTGACATTAAGAACAG
GATGGCAAGTCAACCTGCAATGAACAATGCAAGGCCACCAACTGTGCAGA
TAAAAGGACAACCGGTGAACCAGAAGGCCAGCTGCTGCTCAACTTAATCG
TTTGTCTTATCCTTCATTGCGTGCATTTGTTTATGGGTAGCTTTCTCAAT
CACGTTGTAGGAACCAGTGAAAAACTATTCCTACCCCATGAATCATATGA
CGGATTGCTTTACTAGTTTTTGTAAGTTATTGTGAAATTTCAATTCTTTC
AGTCTATATTACTATTATATGGCATGTACAAATGATGTGTTGCTTGATAG
TGGCAAATGTTATTAAATTGTTCTTTTTCTT
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