CV884994

Overview
NameCV884994
Unique NameCV884994
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length576
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884994 vs. ExPASy Swiss-Prot
Match: YSL6_ARATH (Probable metal-nicotianamine transporter YSL6 OS=Arabidopsis thaliana GN=YSL6 PE=2 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 6.645e-44
Identity = 86/120 (71.67%), Postives = 99/120 (82.50%), Query Frame = 2
Query:    2 GTEVEVSEPLIEKIAAVNDEEE--EADQPIPEWKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKLGFSIKPFTRQENTVIQTCVVACYGLAFSG 355
            GTE+  S  + E +     E+     ++ +PEWK+QITIRGL  SA++GTLFCIITHKLNLTVGIIPSLNVAAGLLGFF VKSWT FLSKLGF++KPFT+QENTVIQTCVVACYGLAFSG
Sbjct:    2 GTEIPRSAEISEALLPPESEKTVTATEEHVPEWKEQITIRGLTVSALLGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFFVKSWTGFLSKLGFTVKPFTKQENTVIQTCVVACYGLAFSG 121          
BLAST of CV884994 vs. ExPASy Swiss-Prot
Match: YSL4_ARATH (Probable metal-nicotianamine transporter YSL4 OS=Arabidopsis thaliana GN=YSL4 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.532e-40
Identity = 79/114 (69.30%), Postives = 96/114 (84.21%), Query Frame = 2
Query:   14 EVSEPLIEKIAAVNDEEEEADQPIPEWKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKLGFSIKPFTRQENTVIQTCVVACYGLAFSG 355
            E+SE L+     + +   +  + +PEWK+QITIRGL++SA++G LFCIITHKLNLT+GIIPSLNVAAGLLGFF +KSWT FLSKLGF  KPFT+QENTVIQTCVV+CYGLA+SG
Sbjct:   10 EISETLL-----LPETNLDHGEYVPEWKEQITIRGLISSALLGILFCIITHKLNLTIGIIPSLNVAAGLLGFFFIKSWTGFLSKLGFLSKPFTKQENTVIQTCVVSCYGLAYSG 118          
BLAST of CV884994 vs. ExPASy Swiss-Prot
Match: YSL6_ORYSJ (Probable metal-nicotianamine transporter YSL6 OS=Oryza sativa subsp. japonica GN=YSL6 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.434e-38
Identity = 73/118 (61.86%), Postives = 95/118 (80.51%), Query Frame = 2
Query:    8 EVEVSEPLIEKIAAVNDEEEEAD--QPIPEWKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKLGFSIKPFTRQENTVIQTCVVACYGLAFSG 355
            + E++ PL+   A    +   A   + +P W++Q+T+RG+V SA++G LFC+ITHKLNLTVG+IPSLNV+AGLLG+FLV+SWT+ L +LGF I PFT+QENTVIQTCVVACYGLAFSG
Sbjct:    7 DAEITGPLLAAAAGGGGDSAAAAGVERVPAWREQVTVRGIVVSAVLGVLFCLITHKLNLTVGVIPSLNVSAGLLGYFLVRSWTAVLGRLGFVIAPFTKQENTVIQTCVVACYGLAFSG 124          
BLAST of CV884994 vs. ExPASy Swiss-Prot
Match: YSL10_ORYSJ (Probable metal-nicotianamine transporter YSL10 OS=Oryza sativa subsp. japonica GN=YSL10 PE=2 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 2.217e-31
Identity = 65/108 (60.19%), Postives = 82/108 (75.93%), Query Frame = 2
Query:   35 EKIAAVNDEEEEADQPIPEWKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKLGF-SIKPFTRQENTVIQTCVVACYGLAFSG 355
            E+ A V+ E     + +P WK+Q+T+R L  SA++G +F +I  KLNLT GIIPSLNV+AGLLGFFL+ SWT  L K G  S++PFTRQENTV+QTCVVAC G+AFSG
Sbjct:   13 EEAAVVSVERVFEGRVVPGWKEQVTLRALAVSALLGAMFSVIVMKLNLTTGIIPSLNVSAGLLGFFLLTSWTKLLDKAGVASVRPFTRQENTVVQTCVVACSGIAFSG 120          
BLAST of CV884994 vs. ExPASy Swiss-Prot
Match: YSL14_ORYSJ (Probable metal-nicotianamine transporter YSL14 OS=Oryza sativa subsp. japonica GN=YSL14 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.182e-30
Identity = 60/103 (58.25%), Postives = 79/103 (76.70%), Query Frame = 2
Query:   47 AVNDEEEEADQPIPEWKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKLGFSIKPFTRQENTVIQTCVVACYGLAFSG 355
            A + E   AD+ +P W++Q+T+R  V SA++  +F +I  KLNLT GIIPSLNV+AGLLGFF V+ WTS + ++G   +PFTRQENTVIQTCVV+ YG+AFSG
Sbjct:   61 ATSVERVFADKAVPSWREQLTLRAFVVSALLAVMFSVIVMKLNLTTGIIPSLNVSAGLLGFFFVRLWTSAVERIGLLKQPFTRQENTVIQTCVVSAYGIAFSG 163          
BLAST of CV884994 vs. ExPASy Swiss-Prot
Match: YSL8_ORYSJ (Probable metal-nicotianamine transporter YSL8 OS=Oryza sativa subsp. japonica GN=YSL8 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.075e-29
Identity = 63/116 (54.31%), Postives = 83/116 (71.55%), Query Frame = 2
Query:    8 EVEVSEPLIEKIAAVNDEEEEADQPIPEWKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKLGFSIKPFTRQENTVIQTCVVACYGLAFSG 355
            E EV+  +I    +V+ E+    + +P W +QIT+R LV SA++GT    I  KLNLT GI+PSLNV+AGLL FFL+K+WTS L + G   KPFTRQENTV+QTCV++C  +AFSG
Sbjct:   10 EAEVTREVI----SVSTEKAFEGKALPAWSEQITVRSLVVSAVLGTFLSFIVMKLNLTSGIVPSLNVSAGLLAFFLMKTWTSALERCGVFPKPFTRQENTVVQTCVISCSSIAFSG 121          
BLAST of CV884994 vs. ExPASy Swiss-Prot
Match: YSL13_ORYSJ (Probable metal-nicotianamine transporter YSL13 OS=Oryza sativa subsp. japonica GN=YSL13 PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 2.075e-29
Identity = 61/107 (57.01%), Postives = 80/107 (74.77%), Query Frame = 2
Query:   35 EKIAAVNDEEEEADQPIPEWKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKLGFSIKPFTRQENTVIQTCVVACYGLAFSG 355
            E+ AA + E   AD+P+P W++Q+T+R  V S  +  +F +I  KLNLT GIIPSLNV+AGLLGFF V+ WT+ + ++G   +PFTRQENTVIQTCVVA Y +AFSG
Sbjct:   53 EEAAAPSVERVFADRPVPSWREQLTVRAFVVSFFLVIMFSVIVMKLNLTTGIIPSLNVSAGLLGFFFVRLWTAAIERVGLLRQPFTRQENTVIQTCVVAGYDIAFSG 159          
BLAST of CV884994 vs. ExPASy Swiss-Prot
Match: YSL11_ORYSJ (Probable metal-nicotianamine transporter YSL11 OS=Oryza sativa subsp. japonica GN=YSL11 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.075e-29
Identity = 61/118 (51.69%), Postives = 85/118 (72.03%), Query Frame = 2
Query:    2 GTEVEVSEPLIEKIAAVNDEEEEADQPIPEWKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKLGFSIKPFTRQENTVIQTCVVACYGLAFSG 355
            G E E +E +   +     E+  AD+P+P W++Q+T+R  V   ++  +F II  KL+LT G+IPSLNV+A LLGFFLV+ WT+ + ++GF  +PFTRQENTVIQTCVV+ YG+AFSG
Sbjct:   37 GEEEEEAEAVAPSV-----EQAFADKPVPSWREQLTVRAFVVGFLLSIMFNIIVMKLSLTTGVIPSLNVSASLLGFFLVRLWTAAIERVGFLKQPFTRQENTVIQTCVVSAYGVAFSG 149          
BLAST of CV884994 vs. ExPASy Swiss-Prot
Match: YSL7_ARATH (Probable metal-nicotianamine transporter YSL7 OS=Arabidopsis thaliana GN=YSL7 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.623e-29
Identity = 61/97 (62.89%), Postives = 74/97 (76.29%), Query Frame = 2
Query:   65 EEADQPIPEWKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKLGFSIKPFTRQENTVIQTCVVACYGLAFSG 355
            EE+++  P W+ Q+T R L+ S I+  LF  +  KLNLT GIIPSLN++AGLLGFF VKSWT  L+K GF  +PFTRQENTVIQTCVVA  G+AFSG
Sbjct:   31 EESNEIPPPWQKQLTFRALIVSFILAILFTFVVMKLNLTTGIIPSLNISAGLLGFFFVKSWTKILNKAGFLKQPFTRQENTVIQTCVVASSGIAFSG 127          
BLAST of CV884994 vs. ExPASy Swiss-Prot
Match: YSL12_ORYSJ (Probable metal-nicotianamine transporter YSL12 OS=Oryza sativa subsp. japonica GN=YSL12 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.030e-28
Identity = 58/99 (58.59%), Postives = 74/99 (74.75%), Query Frame = 2
Query:   59 EEEEADQPIPEWKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKLGFSIKPFTRQENTVIQTCVVACYGLAFSG 355
            E    D+ +P W++Q+T+R  V S  +  +F II  KLNLT GIIPSLNV+AGLLGFF V+ WT+ + ++G   +PFTRQENTVIQTCVVA YG+AFSG
Sbjct:   57 ERAFVDRAVPSWREQLTVRAFVVSFFLSIMFSIIVMKLNLTTGIIPSLNVSAGLLGFFFVRLWTAAIERVGLLRQPFTRQENTVIQTCVVAAYGIAFSG 155          
The following BLAST results are available for this feature:
BLAST of CV884994 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
YSL6_ARATH6.645e-4471.67Probable metal-nicotianamine transporter YSL6 OS=A... [more]
YSL4_ARATH1.532e-4069.30Probable metal-nicotianamine transporter YSL4 OS=A... [more]
YSL6_ORYSJ1.434e-3861.86Probable metal-nicotianamine transporter YSL6 OS=O... [more]
YSL10_ORYSJ2.217e-3160.19Probable metal-nicotianamine transporter YSL10 OS=... [more]
YSL14_ORYSJ4.182e-3058.25Probable metal-nicotianamine transporter YSL14 OS=... [more]
YSL8_ORYSJ2.075e-2954.31Probable metal-nicotianamine transporter YSL8 OS=O... [more]
YSL13_ORYSJ2.075e-2957.01Probable metal-nicotianamine transporter YSL13 OS=... [more]
YSL11_ORYSJ2.075e-2951.69Probable metal-nicotianamine transporter YSL11 OS=... [more]
YSL7_ARATH4.623e-2962.89Probable metal-nicotianamine transporter YSL7 OS=A... [more]
YSL12_ORYSJ1.030e-2858.59Probable metal-nicotianamine transporter YSL12 OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011H04_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884994 ID=CV884994; Name=CV884994; organism=Citrus sinensis; type=EST; length=576bp
GGGAACCGAAGTAGAAGTGTCAGAGCCGTTGATTGAGAAGATCGCGGCCG
TTAATGACGAGGAGGAGGAAGCGGATCAGCCGATTCCGGAATGGAAGGAT
CAGATAACGATCAGAGGGCTGGTGGCGAGCGCGATTATGGGGACGCTCTT
CTGCATCATCACGCACAAGCTCAATCTGACGGTCGGAATTATTCCGTCGC
TCAACGTTGCCGCGGGACTGTTAGGCTTCTTCCTCGTGAAGTCGTGGACG
AGCTTCTTGTCGAAGCTAGGGTTTTCGATTAAGCCTTTTACGAGACAAGA
GAACACCGTCATTCAAACTTGTGTGGTAGCTTGTTATGGCCTCGCTTTTA
GCGGTAATGATTAGTCAATTAATATGTGTTTATTAATCAATTAATCATTT
AGCGGTGTTTGTACTTGCGTTTGATTCTCAAAAAAGTCATAAAAGGGGAG
TCTTTGATTGGTGCTTCTTGAGATGGAGCTTTAAGATCGTATAGTGGAAA
ACGACTTTAGATGCTCTTGTAGAATTGTACCTCTTCAAACATTTTCGACA
AAAAGTACTTCTTAATGCACCCGCGA
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