CV884993

Overview
NameCV884993
Unique NameCV884993
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884993_ssr156 microsatellite CV884993_ssr156:156..165. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7825 contig Csv1_Contig7825:293..1180. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884993 vs. ExPASy Swiss-Prot
Match: GP2_SOLLC (Polygalacturonase non-catalytic subunit AroGP2 OS=Solanum lycopersicum GN=GP2 PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 4.084e-54
Identity = 98/125 (78.40%), Postives = 107/125 (85.60%), Query Frame = -3
Query:  512 ATSILGXXXXXXXXXXXNGSKKKIMIGSVKGINGGKVTKSVSCHQSLFPYLLYYCHSVPKVRVYEADVLDANTKAKINHGVAICHLDTSAWSPTHGAFLALGSGPGKIEVCHWIFENDMTWTTAD 886
            ATS+LG           NGSK  IMIGS+KGINGGKVTKSVSCHQ+L+P LLYYCHSVPKVRVYEAD+LD N+KAKINHGVAICH+DTS+W P HGAF+ALGSGPGKIEVCHWIFENDMTW TAD
Sbjct:  505 ATSVLGRNVVVRTTENTNGSKGNIMIGSIKGINGGKVTKSVSCHQTLYPSLLYYCHSVPKVRVYEADILDPNSKAKINHGVAICHVDTSSWGPRHGAFIALGSGPGKIEVCHWIFENDMTWATAD 629          
BLAST of CV884993 vs. ExPASy Swiss-Prot
Match: GP3_SOLLC (Polygalacturonase non-catalytic subunit AroGP3 OS=Solanum lycopersicum GN=GP3 PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 5.334e-54
Identity = 98/125 (78.40%), Postives = 107/125 (85.60%), Query Frame = -3
Query:  512 ATSILGXXXXXXXXXXXNGSKKKIMIGSVKGINGGKVTKSVSCHQSLFPYLLYYCHSVPKVRVYEADVLDANTKAKINHGVAICHLDTSAWSPTHGAFLALGSGPGKIEVCHWIFENDMTWTTAD 886
            ATS+LG           NGSK  IMIGS+KGINGGKVTKSVSCHQ+L+P LLYYCHSVPKVRVYEAD+LD N+KAKINHGVAICH+DTS+W P HGAF+ALGSGPGKIEVCHWIFENDMTW TAD
Sbjct:  508 ATSVLGRNVVVRTTENTNGSKGNIMIGSIKGINGGKVTKSVSCHQTLYPSLLYYCHSVPKVRVYEADILDPNSKAKINHGVAICHVDTSSWGPRHGAFVALGSGPGKIEVCHWIFENDMTWATAD 632          
BLAST of CV884993 vs. ExPASy Swiss-Prot
Match: GP1_SOLLC (Polygalacturonase-1 non-catalytic subunit beta OS=Solanum lycopersicum GN=GP1 PE=1 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.188e-53
Identity = 96/125 (76.80%), Postives = 105/125 (84.00%), Query Frame = -3
Query:  512 ATSILGXXXXXXXXXXXNGSKKKIMIGSVKGINGGKVTKSVSCHQSLFPYLLYYCHSVPKVRVYEADVLDANTKAKINHGVAICHLDTSAWSPTHGAFLALGSGPGKIEVCHWIFENDMTWTTAD 886
            ATS+LG            GS   IMIGSVKGINGGKVTKSVSCHQ+L+PYLLYYCHSVPKVRVYEAD+LD N+K KINHGVAICH+DTS+W P+HGAF+ALGSGPGKIEVCHWIFENDMTW  AD
Sbjct:  506 ATSVLGRNVVVRTTEDTKGSNGNIMIGSVKGINGGKVTKSVSCHQTLYPYLLYYCHSVPKVRVYEADILDPNSKVKINHGVAICHVDTSSWGPSHGAFVALGSGPGKIEVCHWIFENDMTWAIAD 630          
BLAST of CV884993 vs. ExPASy Swiss-Prot
Match: JP650_ARATH (Probable polygalacturonase non-catalytic subunit JP650 OS=Arabidopsis thaliana GN=JP650 PE=2 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 7.210e-51
Identity = 89/125 (71.20%), Postives = 104/125 (83.20%), Query Frame = -3
Query:  512 ATSILGXXXXXXXXXXXNGSKKKIMIGSVKGINGGKVTKSVSCHQSLFPYLLYYCHSVPKVRVYEADVLDANTKAKINHGVAICHLDTSAWSPTHGAFLALGSGPGKIEVCHWIFENDMTWTTAD 886
            ATS+LG            GSK+K++IG V GINGGK+TK+VSCHQSL+PYLLYYCHSVPKVRVYEAD+L+ N+K KINHG+AICH+DTS+W P+HGAFLALGS PG+IEVCHWIFENDM W  AD
Sbjct:  502 ATSVLGRSVVLRTTENVAGSKEKVVIGKVNGINGGKLTKAVSCHQSLYPYLLYYCHSVPKVRVYEADLLELNSKKKINHGIAICHMDTSSWGPSHGAFLALGSKPGRIEVCHWIFENDMNWAIAD 626          
BLAST of CV884993 vs. ExPASy Swiss-Prot
Match: Y639_ARATH (Probable polygalacturonase non-catalytic subunit At1g60390 OS=Arabidopsis thaliana GN=At1g60390 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.606e-50
Identity = 90/125 (72.00%), Postives = 102/125 (81.60%), Query Frame = -3
Query:  512 ATSILGXXXXXXXXXXXNGSKKKIMIGSVKGINGGKVTKSVSCHQSLFPYLLYYCHSVPKVRVYEADVLDANTKAKINHGVAICHLDTSAWSPTHGAFLALGSGPGKIEVCHWIFENDMTWTTAD 886
            ATS+LG            GSKKK++IG V GINGG VT++VSCHQSL+PYLLYYCHSVP+VRVYE D+LD  +  KINHGVAICH+DTSAWSP+HGAFLALGSGPG+IEVCHWIFENDMTW   D
Sbjct:  500 ATSVLGRGVVVRTTENVVGSKKKVVIGKVNGINGGDVTRAVSCHQSLYPYLLYYCHSVPRVRVYETDLLDPKSLEKINHGVAICHIDTSAWSPSHGAFLALGSGPGQIEVCHWIFENDMTWNIID 624          
BLAST of CV884993 vs. ExPASy Swiss-Prot
Match: JP630_ARATH (Probable polygalacturonase non-catalytic subunit JP630 OS=Arabidopsis thaliana GN=JP630 PE=2 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 4.673e-50
Identity = 89/125 (71.20%), Postives = 101/125 (80.80%), Query Frame = -3
Query:  512 ATSILGXXXXXXXXXXXNGSKKKIMIGSVKGINGGKVTKSVSCHQSLFPYLLYYCHSVPKVRVYEADVLDANTKAKINHGVAICHLDTSAWSPTHGAFLALGSGPGKIEVCHWIFENDMTWTTAD 886
            ATS+LG            GSK+K+MIG V GINGG+VTKSVSCHQSL+PYLLYYCHSVPKVRVYE+D+LD  +KAKINHG+AICH+DTSAW   HGAF+ LGS PG+IEVCHWIFENDM W  AD
Sbjct:  498 ATSVLGRSVVLRTTESVAGSKEKVMIGKVNGINGGRVTKSVSCHQSLYPYLLYYCHSVPKVRVYESDLLDPKSKAKINHGIAICHMDTSAWGANHGAFMLLGSRPGQIEVCHWIFENDMNWAIAD 622          
BLAST of CV884993 vs. ExPASy Swiss-Prot
Match: BURPC_ORYSJ (BURP domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=BURP12 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.077e-46
Identity = 84/125 (67.20%), Postives = 99/125 (79.20%), Query Frame = -3
Query:  512 ATSILGXXXXXXXXXXXNGSKKKIMIGSVKGINGGKVTKSVSCHQSLFPYLLYYCHSVPKVRVYEADVLDANTKAKINHGVAICHLDTSAWSPTHGAFLALGSGPGKIEVCHWIFENDMTWTTAD 886
            A  +LG            GS  +I +G+V G++GGKVT+SVSCHQSLFPYL+YYCHSVPKVRVYEAD++ A++  KINHGVAICHLDTS WSPTHGAF+ALG  PG++EVCHWIFE DMTWT AD
Sbjct:  503 AVEMLGNDIVVRSTASTAGSGGQIRLGNVTGVDGGKVTRSVSCHQSLFPYLVYYCHSVPKVRVYEADIMAADSDQKINHGVAICHLDTSDWSPTHGAFIALGGKPGEVEVCHWIFEGDMTWTVAD 627          
BLAST of CV884993 vs. ExPASy Swiss-Prot
Match: BURPG_ORYSJ (BURP domain-containing protein 16 OS=Oryza sativa subsp. japonica GN=BURP16 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.154e-40
Identity = 76/125 (60.80%), Postives = 91/125 (72.80%), Query Frame = -3
Query:  512 ATSILGXXXXXXXXXXXNGSKKKIMIGSVKGINGGKVTKSVSCHQSLFPYLLYYCHSVPKVRVYEADVLDANTKAKINHGVAICHLDTSAWSPTHGAFLALGSGPGKIEVCHWIFENDMTWTTAD 886
            A ++LG           NG  + IMIG VKGINGGK+T SVSCH+ LFPY++YYCHSVPK+RVYEA++L   TK KIN GVAICH+DTSAW+  H AF+ALG  PG+ +VCHWIF   MTW  AD
Sbjct:  218 AVAMLGDDIVVRSTVLPNGPGESIMIGKVKGINGGKITSSVSCHEYLFPYMVYYCHSVPKIRVYEAEILSVQTKEKINSGVAICHIDTSAWNAGHPAFVALGGKPGQNKVCHWIFNGSMTWVIAD 342          
BLAST of CV884993 vs. ExPASy Swiss-Prot
Match: BURPE_ORYSJ (BURP domain-containing protein 14 OS=Oryza sativa subsp. japonica GN=BURP14 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.720e-31
Identity = 65/108 (60.19%), Postives = 75/108 (69.44%), Query Frame = -3
Query:  566 ATSILGXXXXXXXXXXXNGSKKKIMIGSVKGIN-GGKVTKSVSCHQSLFPYLLYYCHSVPKVRVYEADVLDANTKAKINHGVAICHLDTSAWSPTHGAFLALGSGPGK 886
            A  +LG            G    + +G V G+  GG VT+SVSCHQSLFPYL+YYCHSVP VRVYEAD+L  ++  KINHGVAICHLDTS WSP HGAF+ALG  PGK
Sbjct:  565 AVEMLGDNVVARATESTAGGGGDVRLGRVAGVPAGGNVTRSVSCHQSLFPYLVYYCHSVPTVRVYEADILAVDSNQKINHGVAICHLDTSDWSPNHGAFIALGGKPGK 672          
BLAST of CV884993 vs. ExPASy Swiss-Prot
Match: BURP5_ORYSJ (BURP domain-containing protein 5 OS=Oryza sativa subsp. japonica GN=BURP5 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 7.793e-13
Identity = 30/82 (36.59%), Postives = 47/82 (57.32%), Query Frame = -3
Query:  521 VSCHQSLFPYLLYYCHSVPKVRVYEADVLDANTKAKINHGVAICHLDTSAWSPTHGAFLALGSGPGKIEVCHWIFENDMTWT 766
            ++CH   +PY ++ CH     R Y+A ++  +  A     VA+CH DT+ W+P H AF  LG  PG + VCH++  + + WT
Sbjct:  242 IACHPESYPYAVFMCHLTEATRAYKASLVGKDGAAV--EAVAVCHTDTAEWNPKHAAFQVLGVKPGTVPVCHFVQPDVVVWT 321          
The following BLAST results are available for this feature:
BLAST of CV884993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
GP2_SOLLC4.084e-5478.40Polygalacturonase non-catalytic subunit AroGP2 OS=... [more]
GP3_SOLLC5.334e-5478.40Polygalacturonase non-catalytic subunit AroGP3 OS=... [more]
GP1_SOLLC1.188e-5376.80Polygalacturonase-1 non-catalytic subunit beta OS=... [more]
JP650_ARATH7.210e-5171.20Probable polygalacturonase non-catalytic subunit J... [more]
Y639_ARATH1.606e-5072.00Probable polygalacturonase non-catalytic subunit A... [more]
JP630_ARATH4.673e-5071.20Probable polygalacturonase non-catalytic subunit J... [more]
BURPC_ORYSJ1.077e-4667.20BURP domain-containing protein 12 OS=Oryza sativa ... [more]
BURPG_ORYSJ1.154e-4060.80BURP domain-containing protein 16 OS=Oryza sativa ... [more]
BURPE_ORYSJ3.720e-3160.19BURP domain-containing protein 14 OS=Oryza sativa ... [more]
BURP5_ORYSJ7.793e-1336.59BURP domain-containing protein 5 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011H01_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884993 ID=CV884993; Name=CV884993; organism=Citrus sinensis; type=EST; length=888bp
TTTATTCGTGTATTATAAACACTTACATTGCAAAGAGTGTACAAAATATA
ACTAAAAAAGCTGAAATACAATAAATCATATGCAGAAGGCGGTAAGAAGA
AAAATCACATTGAAATGGAAATTCTACACTTGGGTGTATCTGAATTTTAT
TTTTAATATATATATTTGAAAAATACCACTAAAAAAAAAACAACAGATTA
GGATGAGGAAGTATCCACCAATCGTAAGAGCAAGAGAAGAGAAATATGCC
TCCCATCCTATCCACTCCAACAACAATTCCAATTGTTAACCATTTGTACA
CTTCCTCTTGTTTTGGTGCTCAAATTGATATTTTATATAAATTATATATT
ATGAAATTGCATTAACAAGCACTAATAAATAAGCCTCTACTCTTCTTATC
GTCATCGATACGCTGAATTATATAGATGGGATAGCATGAGCTGGACCCAC
AGCTAAGTTATCTTAGCAAATGGCTCGAACCCACGTCCACATGACCTGAC
CCAAATGGCTAATCAGCCGTGGTCCAAGTCATATCATTCTCAAAAATCCA
GTGGCAAACCTCGATCTTCCCAGGACCCGAACCCAAAGCCAAGAAGGCTC
CGTGGGTCGGGCTCCAAGCTGAGGTATCCAAGTGACAGATGGCAACCCCG
TGATTGATCTTGGCTTTCGTGTTAGCATCCAAGACATCGGCTTCATACAC
GCGAACTTTAGGAACAGAGTGGCAGTAATAAAGCAGATAAGGAAACAAGC
TTTGATGACAAGAAACTGATTTAGTGACTTTACCACCGTTGATTCCTTTG
ACGGATCCGATCATGATCTTCTTCTTTGACCCATTCACATTCTCGGTTGT
ACGGACCACCACATTGCGGCCCAAAATGGAAGTGGCAA
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