CV884982

Overview
NameCV884982
Unique NameCV884982
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length909
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884982_ssr691 microsatellite CV884982_ssr691:691..702. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3381 contig Csv1_Contig3381:1..909. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884982 vs. ExPASy Swiss-Prot
Match: F10AL_ARATH (FAM10 family protein At4g22670 OS=Arabidopsis thaliana GN=At4g22670 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.739e-23
Identity = 52/59 (88.14%), Postives = 56/59 (94.92%), Query Frame = -2
Query:  300 VDFSKILNDPELMAAFSDPEVMAALQDVMKNPANLAQHQANPKVAPIIAKMMAKFGGPK 476
            +DFSKILNDPELM AFSDPEVMAALQDVMKNPANLA+HQANPKVAP+IAKMM KF GP+
Sbjct:  383 MDFSKILNDPELMTAFSDPEVMAALQDVMKNPANLAKHQANPKVAPVIAKMMGKFAGPQ 441          

HSP 2 Score: 94.7449 bits (234), Expect = 7.561e-19
Identity = 45/58 (77.59%), Postives = 51/58 (87.93%), Query Frame = -2
Query:  735 ALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRI 908
            ALEINPDSAKGYK+RGMA AMLG W EA  DLH+AS ID+DEEI+AVLKKVEPNA ++
Sbjct:  183 ALEINPDSAKGYKSRGMARAMLGEWAEAAKDLHLASTIDYDEEISAVLKKVEPNAHKL 240          
BLAST of CV884982 vs. ExPASy Swiss-Prot
Match: F10A1_PONAB (Hsc70-interacting protein OS=Pongo abelii GN=ST13 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.883e-15
Identity = 36/58 (62.07%), Postives = 48/58 (82.76%), Query Frame = -2
Query:  735 ALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRI 908
            A+EINPDSA+ YK RG AH +LGHWEEA HDL +A K+D+DE+ +A+LK+V+P A +I
Sbjct:  174 AIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLKEVQPKAQKI 231          

HSP 2 Score: 73.9442 bits (180), Expect = 1.381e-12
Identity = 32/54 (59.26%), Postives = 46/54 (85.19%), Query Frame = -2
Query:  306 SKILNDPELMAAFSDPEVMAALQDVMKNPANLAQHQANPKVAPIIAKMMAKFGG 467
            ++IL+DPE++AA  DPEVM A QDV +NPAN++++Q+NPKV  +I+K+ AKFGG
Sbjct:  314 NEILSDPEVLAAMQDPEVMVAFQDVAQNPANMSKYQSNPKVMNLISKLSAKFGG 367          
BLAST of CV884982 vs. ExPASy Swiss-Prot
Match: F10A1_HUMAN (Hsc70-interacting protein OS=Homo sapiens GN=ST13 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.883e-15
Identity = 36/58 (62.07%), Postives = 48/58 (82.76%), Query Frame = -2
Query:  735 ALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRI 908
            A+EINPDSA+ YK RG AH +LGHWEEA HDL +A K+D+DE+ +A+LK+V+P A +I
Sbjct:  174 AIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLKEVQPRAQKI 231          

HSP 2 Score: 73.9442 bits (180), Expect = 1.381e-12
Identity = 32/54 (59.26%), Postives = 46/54 (85.19%), Query Frame = -2
Query:  306 SKILNDPELMAAFSDPEVMAALQDVMKNPANLAQHQANPKVAPIIAKMMAKFGG 467
            ++IL+DPE++AA  DPEVM A QDV +NPAN++++Q+NPKV  +I+K+ AKFGG
Sbjct:  314 NEILSDPEVLAAMQDPEVMVAFQDVAQNPANMSKYQSNPKVMNLISKLSAKFGG 367          
BLAST of CV884982 vs. ExPASy Swiss-Prot
Match: F10A4_HUMAN (Protein FAM10A4 OS=Homo sapiens GN=FAM10A4 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.072e-15
Identity = 36/58 (62.07%), Postives = 47/58 (81.03%), Query Frame = -2
Query:  735 ALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRI 908
            A+EINPDSA+ YK RG AH +LGHWEEA HDL +A K D+DE+ +A+LK+V+P A +I
Sbjct:  170 AIEINPDSAQPYKRRGKAHRLLGHWEEAAHDLALACKFDYDEDASAMLKEVQPRAQKI 227          
BLAST of CV884982 vs. ExPASy Swiss-Prot
Match: F10A5_HUMAN (Protein FAM10A5 OS=Homo sapiens GN=FAM10A5 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.624e-15
Identity = 36/58 (62.07%), Postives = 47/58 (81.03%), Query Frame = -2
Query:  735 ALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRI 908
            A+EINPDSA+ YK RG AH +LGHWEEA HDL  A K+D+DE+ +A+LK+V+P A +I
Sbjct:  174 AIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLAFACKLDYDEDASAMLKEVQPRAQKI 231          

HSP 2 Score: 73.1738 bits (178), Expect = 2.356e-12
Identity = 32/54 (59.26%), Postives = 45/54 (83.33%), Query Frame = -2
Query:  306 SKILNDPELMAAFSDPEVMAALQDVMKNPANLAQHQANPKVAPIIAKMMAKFGG 467
            ++IL+DPE +AA  DPEVM A QDV +NPAN++++Q+NPKV  +I+K+ AKFGG
Sbjct:  314 NEILSDPEALAAMQDPEVMVAFQDVAQNPANMSKYQSNPKVMNLISKLSAKFGG 367          
BLAST of CV884982 vs. ExPASy Swiss-Prot
Match: F10A1_MOUSE (Hsc70-interacting protein OS=Mus musculus GN=St13 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.651e-15
Identity = 35/58 (60.34%), Postives = 48/58 (82.76%), Query Frame = -2
Query:  735 ALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRI 908
            A+EINPDSA+ YK RG AH +LGHWEEA HDL +A K+D+DE+ +A+L++V+P A +I
Sbjct:  173 AIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLREVQPRAQKI 230          

HSP 2 Score: 72.7886 bits (177), Expect = 3.077e-12
Identity = 31/54 (57.41%), Postives = 46/54 (85.19%), Query Frame = -2
Query:  306 SKILNDPELMAAFSDPEVMAALQDVMKNPANLAQHQANPKVAPIIAKMMAKFGG 467
            ++IL+DPE++AA  DPEVM A QDV +NP+N++++Q+NPKV  +I+K+ AKFGG
Sbjct:  316 NEILSDPEVLAAMQDPEVMVAFQDVAQNPSNMSKYQSNPKVMNLISKLSAKFGG 369          
BLAST of CV884982 vs. ExPASy Swiss-Prot
Match: F10A1_CHICK (Hsc70-interacting protein OS=Gallus gallus GN=ST13 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.130e-14
Identity = 35/58 (60.34%), Postives = 48/58 (82.76%), Query Frame = -2
Query:  735 ALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRI 908
            A++INPDSA+ YK RG AH +LGHWEEA HDL +A K+D+DE+ +A+LK+V+P A +I
Sbjct:  172 AIKINPDSAQTYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLKEVQPRAQKI 229          

HSP 2 Score: 72.0182 bits (175), Expect = 5.249e-12
Identity = 32/53 (60.38%), Postives = 44/53 (83.02%), Query Frame = -2
Query:  309 SKILNDPELMAAFSDPEVMAALQDVMKNPANLAQHQANPKVAPIIAKMMAKFG 467
            ++IL+DPE++AA  DPEVMAA QDV +NPAN++++Q NPKV  +I K+ AKFG
Sbjct:  306 NEILSDPEVLAAMQDPEVMAAFQDVAQNPANMSKYQNNPKVMSLITKLSAKFG 358          
BLAST of CV884982 vs. ExPASy Swiss-Prot
Match: F10A1_RAT (Hsc70-interacting protein OS=Rattus norvegicus GN=St13 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.324e-14
Identity = 34/58 (58.62%), Postives = 47/58 (81.03%), Query Frame = -2
Query:  735 ALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRI 908
            A+EINPDSA+ YK RG AH +LGHWEEA  DL +A K+D+DE+ +A+L++V+P A +I
Sbjct:  173 AIEINPDSAQPYKWRGKAHRLLGHWEEAARDLALACKLDYDEDASAMLREVQPRAQKI 230          

HSP 2 Score: 71.633 bits (174), Expect = 6.855e-12
Identity = 31/54 (57.41%), Postives = 45/54 (83.33%), Query Frame = -2
Query:  306 SKILNDPELMAAFSDPEVMAALQDVMKNPANLAQHQANPKVAPIIAKMMAKFGG 467
            ++IL+DPE++AA  DPEVM A QDV +NP+N++++Q NPKV  +I+K+ AKFGG
Sbjct:  313 NEILSDPEVLAAMQDPEVMVAFQDVAQNPSNMSKYQNNPKVMNLISKLSAKFGG 366          
The following BLAST results are available for this feature:
BLAST of CV884982 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
F10AL_ARATH1.739e-2388.14FAM10 family protein At4g22670 OS=Arabidopsis thal... [more]
F10A1_PONAB3.883e-1562.07Hsc70-interacting protein OS=Pongo abelii GN=ST13 ... [more]
F10A1_HUMAN3.883e-1562.07Hsc70-interacting protein OS=Homo sapiens GN=ST13 ... [more]
F10A4_HUMAN5.072e-1562.07Protein FAM10A4 OS=Homo sapiens GN=FAM10A4 PE=1 SV... [more]
F10A5_HUMAN6.624e-1562.07Protein FAM10A5 OS=Homo sapiens GN=FAM10A5 PE=1 SV... [more]
F10A1_MOUSE8.651e-1560.34Hsc70-interacting protein OS=Mus musculus GN=St13 ... [more]
F10A1_CHICK1.130e-1460.34Hsc70-interacting protein OS=Gallus gallus GN=ST13... [more]
F10A1_RAT7.324e-1458.62Hsc70-interacting protein OS=Rattus norvegicus GN=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011G05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884982 ID=CV884982; Name=CV884982; organism=Citrus sinensis; type=EST; length=909bp
GGCTATGGCATACCTTTAATAATTCTGCAAGTAAAAACTAGTCCCAAGTT
ATGAAAGCACATTCCTTGTTCAGCAACTAAGACAAGAATTTGAGGACGAA
ATTTTAAACCACTACATAAACTCAATCCTTTCACCCAGAAAGAAAAATTC
CCAGCAGATATGTAGATGCAGCTGCCAAACATTCCTAATCCATACCATAC
CCAGAAATCGTAAGAGCCGCACAAGATTCATGAGATGTGACACACAAAGG
TTACCATTCACCAACAACAAAATAAGATGCCAGCCTGGAAAGCAATCTAC
TTGGGTCCTCCAAACTTGGCCATCATCTTAGCAATTATGGGAGCCACTTT
GGGATTTGCTTGATGCTGAGCGAGATTAGCAGGGTTCTTCATTACATCTT
GAAGAGCAGCCATGACTTCTGGATCGCTAAATGCTGCCATCAACTCAGGG
TCATTTAATATCTTGCTAAAATCAACATTTCCAGGCCCCCCTCCTGGCAT
GCCACCTGGGAAGCCTCCTGGCATGCCACCAGGGAAGCCTCCAGGGAAGC
CTCCTGGCATTCCACCTGCTCCACCAGGCATCCCTCCAGTTCTTTCGCTT
GAAGATGATTGCTCTTCCTTCTTAGCCTTCTCATATGCAGCCTGAGCTTC
AGCACGACGACGAAGTCTCTCACGCTCAACCTTTCTCTCTTCTCTCTCTC
TCCGCAGTCTATCATACTTCCTACGGTGTTCTTCAATCCTCAGTGCATTG
GGTTCAACCTTTTTAAGTACAGCAGCTATTTCTTCATCAAAATCTATCTT
CGAAGCAACATGAAGATCATGCACAGCCTCCTCCCAGTGACCTAGCATTG
CATGTGCCATGCCACGGGTCTTGTAGCCCTTAGCAGAATCTGGGTTAATC
TCTAAAGCT
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