CV884979

Overview
NameCV884979
Unique NameCV884979
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length865
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig446 contig Csv1_Contig446:656..1520. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884979 vs. ExPASy Swiss-Prot
Match: JMT_ARATH (Jasmonate O-methyltransferase OS=Arabidopsis thaliana GN=JMT PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 5.298e-35
Identity = 79/172 (45.93%), Postives = 109/172 (63.37%), Query Frame = -3
Query:  369 EELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEVSEVNWNAYQNGFKFNEAVDAF-------NDGGYNVANCMRAVAEPLLVSQFGESIIDELFKRYREIVADRMSKEKTKFINVTVSLTKIG 863
            EELV  GRMVL+FLGR+S DP+++E CY WELLA AL +M  EG+IEEEK++ FN P Y  S  E+K  + KEGSF+ID LE+S ++W   + G    E+ D            G  V+N +RAV EP+L   FGE+++DELF+RY +IV +       ++  V +SL + G
Sbjct:  221 EELVPGGRMVLSFLGRRSLDPTTEESCYQWELLAQALMSMAKEGIIEEEKIDAFNAPYYAASSEELKMVIEKEGSFSIDRLEISPIDW---EGGSISEESYDLVIRSKPEALASGRRVSNTIRAVVEPMLEPTFGENVMDELFERYAKIVGEYFYVSSPRYAIVILSLVRAG 389          
BLAST of CV884979 vs. ExPASy Swiss-Prot
Match: JMT_BRARP (Jasmonate O-methyltransferase OS=Brassica rapa subsp. pekinensis GN=JMT PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.919e-35
Identity = 77/171 (45.03%), Postives = 109/171 (63.74%), Query Frame = -3
Query:  369 EELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEVSEVNWNAYQNGFKFNEAVDAFN------DGGYNVANCMRAVAEPLLVSQFGESIIDELFKRYREIVADRMSKEKTKFINVTVSLTKIG 863
            EELV  GRMVL+FLGR S DP+++E CY WELLA AL ++  EG+IEEE ++ FN P Y  SP E+K  + KEGSF+ID LE+S V+W   + G   +++ D           G  VA  +RAV EP+L   FG+ ++DELF+RY ++V + +     ++  V VSL ++G
Sbjct:  225 EELVPGGRMVLSFLGRSSPDPTTEESCYQWELLAQALMSLAKEGIIEEENIDAFNAPYYAASPEELKMAIEKEGSFSIDRLEISPVDW---EGGSISDDSYDIVRFKPEALASGRRVAKTIRAVVEPMLEPTFGQKVMDELFERYAKLVGEYVYVSSPRYTIVIVSLLRMG 392          
BLAST of CV884979 vs. ExPASy Swiss-Prot
Match: BAMT_ANTMA (Benzoate carboxyl methyltransferase OS=Antirrhinum majus GN=BAMT PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.131e-30
Identity = 68/166 (40.96%), Postives = 108/166 (65.06%), Query Frame = -3
Query:  375 EELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEVSEVNWNA---YQNGFKFNEAVDAFNDGGYNVANCMRAVAEPLLVSQFGESIIDELFKRYREIVADRMSKEKTKFINVTVSLTK 863
            EE+V  GRMVLTF GR  +DPSSK+   I+ LLA  L +MV+EGL++ + +  FNIP Y+P   E+++ ++ EGSFT+D LEV  V W+A     +  + + ++      G  VA+C+RA+ EP+L S FG +I+D LF +Y + + + +S E + + ++ VSL++
Sbjct:  198 EEIVPGGRMVLTFNGRSVEDPSSKDDLAIFTLLAKTLVDMVAEGLVKMDDLYSFNIPIYSPCTREVEAAILSEGSFTLDRLEVFRVCWDASDYTDDDDQQDPSIFGKQRSGKFVADCVRAITEPMLASHFGSTIMDLLFGKYAKKIVEHLSVENSSYFSIVVSLSR 363          
The following BLAST results are available for this feature:
BLAST of CV884979 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
JMT_ARATH5.298e-3545.93Jasmonate O-methyltransferase OS=Arabidopsis thali... [more]
JMT_BRARP6.919e-3545.03Jasmonate O-methyltransferase OS=Brassica rapa sub... [more]
BAMT_ANTMA5.131e-3040.96Benzoate carboxyl methyltransferase OS=Antirrhinum... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011G04_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884979 ID=CV884979; Name=CV884979; organism=Citrus sinensis; type=EST; length=865bp
GTACATAGCTTTTATTTTGGTACACACAAACCAAAGGGCCACATACTAAT
TCTTTCATTCGAAGAGAATACAGTATTAATGCCGACACTTGTTGATACCA
AAATTTACTGACATATTCAAACCAACGAGTGATAGAATTAACTATGATAA
TTAAACATTCTAAATATTATCCTGAAATGTGCACCTCAAATGAGTGATGT
AACATTTATTAAGTGGACGGTGATGTTGAACATTTTTTAATACCCCATTT
TCCCATCCACAATATTGAAGCACATCAATGAGGACGCATCTTCTTGGGAT
AAATTATTGGAAAGGCTAACATGCCTCTCAAGTTTTATTTCTTAATAATT
GTCTTATCTTAGTGATCATCCAATTTTCGTCAAGGAAACTGTCACGTTGA
TAAACTTAGTCTTTTCCTTAGACATGCGATCGGCAACAATTTCCCTGTAC
CTTTTAAACAGCTCATCAATGATTGATTCACCAAACTGACTAACAAGCAA
GGGCTCGGCCACAGCTCTCATGCAATTCGCAACGTTGTATCCTCCATCAT
TAAATGCATCAACGGCCTCGTTAAACTTAAAACCATTCTGATAAGCGTTC
CAGTTAACTTCAGAAACCTCAAGGTGATCAATGGTGAAGGATCCTTCCTT
TATAACCTCCGATTTTATTTCAGCTGGTGATGGTGTATACTGCGGAATGT
TGAAACAATTCACTTTCTCTTCTTCTATGAGTCCCTCGGAGACCATATTG
TTGAGAGCCGTGGCCAAGAGCTCCCAAATGTAGCAGCACTCTTTGCTTGA
GGGATCTTGGCTTTTTCTTCCTAGAAATGTTAAAACCATGCGCCCTTCTG
CCACCAATTCCTCTG
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