CX673838

Overview
NameCX673838
Unique NameCX673838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length901
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX673838 vs. ExPASy Swiss-Prot
Match: FNTA_PEA (Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Pisum sativum GN=FTA PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.177e-48
Identity = 90/143 (62.94%), Postives = 114/143 (79.72%), Query Frame = -3
Query:  471 WNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRISSVCLKVLSTKSNYVFALSTLLDLICHGFRPSEEFREAINALNTPDSGPLDSDLGRAICRVLECVDPLRCNYWLWRKSKLP 899
            WNQRYFV+TRSP+LGGL AMR+SEV FT+EAI+  PENES WRYLRGL+KD++  ++ND ++SS+CLK+L TKSNY+FALSTLLDL     +P+E+FR+AI AL        DSD+   IC +LE VDP+R NYW+WRKS+LP
Sbjct:  188 WNQRYFVITRSPVLGGLKAMRESEVLFTVEAIISYPENESSWRYLRGLFKDESTLYVNDAQVSSLCLKILKTKSNYLFALSTLLDLSASVIQPNEDFRDAIEALRLQILIKQDSDIAITICSILEQVDPIRVNYWVWRKSRLP 330          
BLAST of CX673838 vs. ExPASy Swiss-Prot
Match: FNTA_ARATH (Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Arabidopsis thaliana GN=FTA PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.999e-44
Identity = 85/143 (59.44%), Postives = 110/143 (76.92%), Query Frame = -3
Query:  474 WNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRISSVCLKVLS-TKSNYVFALSTLLDLICHGFRPSEEFREAINALNTPDSGPLDSDLGRAICRVLECVDPLRCNYWLWRKSKL 899
            WNQRY+V+T+SPLLGGL AMR+SEV++TI+AIL NP NES WRYL+ LYKDD ESWI+DP +SSVCL VLS T   + FALSTLLDL+C G RP+ E ++++ AL   +    +++L   +C +L  VDP+R NYW WRKSK+
Sbjct:  196 WNQRYYVITQSPLLGGLEAMRESEVSYTIKAILTNPANESSWRYLKALYKDDKESWISDPSVSSVCLNVLSRTDCFHGFALSTLLDLLCDGLRPTNEHKDSVRALANEEP---ETNLANLVCTILGRVDPVRANYWAWRKSKI 335          
BLAST of CX673838 vs. ExPASy Swiss-Prot
Match: FNTA_SOLLC (Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Solanum lycopersicum GN=FTA PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.260e-42
Identity = 81/140 (57.86%), Postives = 107/140 (76.43%), Query Frame = -3
Query:  480 WNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRISSVCLKVLSTKSNYVFALSTLLDLICHGFRPSEEFREAINALNTPDSGPLDSDLGRAICRVLECVDPLRCNYWLWRKS 899
            WNQRYFVVTRSPLLGGL+AMR+ EVN+T++AI  +PENESPWRYLRGLYK+DT+S + D +++SV   VL++++++V AL  LLDL+CH   PS+E + A++ L TP S   D  L + IC +LE  DP+R  YW WRKS
Sbjct:  186 WNQRYFVVTRSPLLGGLVAMRELEVNYTVQAIRASPENESPWRYLRGLYKNDTQSLVQDSQVASVLWDVLTSQNSHVHALRFLLDLLCHDLEPSQELKSAVDVL-TPQSCSPDLALTKKICSILEHADPMRVKYWNWRKS 324          
The following BLAST results are available for this feature:
BLAST of CX673838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
FNTA_PEA1.177e-4862.94Protein farnesyltransferase/geranylgeranyltransfer... [more]
FNTA_ARATH2.999e-4459.44Protein farnesyltransferase/geranylgeranyltransfer... [more]
FNTA_SOLLC1.260e-4257.86Protein farnesyltransferase/geranylgeranyltransfer... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_2C03_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-2C03-E6-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX673838 ID=CX673838; Name=CX673838; organism=Citrus sinensis; type=EST; length=901bp
TTCATTAAGGAAATTAGAGAGATAAATATAGCATCTCTCGATAGTAGCAG
CAATTATCCATCAATAGGTGAAAAGCACAGTGCTCCCGGCAAACATTACA
TCATACAAACCAGATTCATATAATTCTAGTTTCGATGCAAAAATGTTTTC
TTGTACAACAGAAATATTACGTAAACTGGAGTCCTTAACAGAATCATGGG
ATCCATCAATTCCTCCAGTAGATTCCACTCTATGATACAGCTGAGGGGAA
CATGTTATTGGCACAACATCTGGAGCTCTACGACAAATGGCGCTGCTCAC
TCAAAGAAATCACTCAACTAGCTATTGGTTGCTCCCTTTGATTAAAATAA
ATTAGTCAAGATCGAACAAACAGTCTTCTGCATGTGAAAAGGATGTAGGT
TTGACCATGCATCCATCAGCATGACCTAAACTGGACAACATCCTATCTCT
TATTGACTCGAGACAGTCAGAGGAAGCTTGCTCTTGCGCCACAACCAATA
GTTACATCTTAGTGGATCAACACACTCTAAAACTCGACAAATAGCCCTCC
CCAAGTCAGAATCCAGTGGTCCTGAGTCTGGAGTATTCAAAGCATTTATT
GCTTCTCTGAACTCTTCACTTGGCCGAAAACCATGGCAAATAAGATCTAA
AAGTGTGCTCAGAGCAAAAACATAGTTGCTTTTGGTACTCAAAACTTTCA
AACACACTGAGGAGATCCTAGGATCATTAATCCAAGACTCGGTGTCATCC
TTGTAAAGGCCTCGAAGGTATCTCCAAGGACTCTCATTCTCAGGGTTACC
CAAAATTGCTTCAATGGTAAAATTAACTTCAGAATCTCTCATTGCTATTA
GGCCTCCAAGTAAGGGAGATCTGGTTACTACAAAGTATCTCTGATTCCAT
G
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