CV884966

Overview
NameCV884966
Unique NameCV884966
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10786 contig Csv1_Contig10786:36..850. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CV884966 vs. ExPASy Swiss-Prot
Match: NOTUM_MOUSE (Protein notum homolog OS=Mus musculus GN=Notum PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.495e-17
Identity = 55/175 (31.43%), Postives = 91/175 (52.00%), Query Frame = 3 
Query:  255 CLDGSPPAYHFDKGFGAGINNWLVHIEGGGWCNNVTTCLERKKT--RLGSSKQMVKVVAFSGMLSNKQKFNPDFYNWNRIKVRYCDGASFTGDVEAVNPANNLHFRGARVFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCDNFRALFP----VGTKVKCFANAGYFINAK 761
            C DGSP  Y+  +  G+    WL+ +EGG +C N   C  R  T  RL SSK        +G+LS++ + NP ++N N + + YC    ++G     +  N   F G+ + Q V+ +L+ KG+  A+  +L+G SAGG   +L+ D    L         +V+  A++G+F++ K
Sbjct:  108 CNDGSPAGYYLKESKGS--RRWLLFLEGGWYCFNRENCDSRYSTMRRLMSSKDWPHTRTGTGILSSQPEENPHWWNANMVFIPYCSSDVWSG-ASPKSDKNEYAFMGSLIIQEVVRELLGKGLSGAKVLLLAGSSAGGTGVLLNVDRVAELLEELGYPSIQVRGLADSGWFLDNK 279
[Close]
BLAST of CV884966 vs. ExPASy Swiss-Prot
Match: NOTUM_HUMAN (Protein notum homolog OS=Homo sapiens GN=NOTUM PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.017e-16
Identity = 54/175 (30.86%), Postives = 93/175 (53.14%), Query Frame = 3 
Query:  255 CLDGSPPAYHFDKGFGAGINNWLVHIEGGGWCNNVTTCLERKKT--RLGSSKQMVKVVAFSGMLSNKQKFNPDFYNWNRIKVRYCDGASFTGDVEAVNPANNLHFRGARVFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCD----NFRALFPVGTKVKCFANAGYFINAK 761
            C DGSP  Y+  +  G+    WL+ +EGG +C N   C  R  T  RL SS+   +    +G+LS++ + NP ++N N + + YC    ++G   + +  N   F GA + Q V+ +L+ +G+  A+  +L+G SAGG   +L+ D        L     +V+  A++G+F++ K
Sbjct:  101 CNDGSPAGYYLKESRGS--RRWLLFLEGGWYCFNRENCDSRYDTMRRLMSSRDWPRTRTGTGILSSQPEENPYWWNANMVFIPYCSSDVWSG-ASSKSEKNEYAFMGALIIQEVVRELLGRGLSGAKVLLLAGSSAGGTGVLLNVDRVAEQLEKLGYPAIQVRGLADSGWFLDNK 272
The following BLAST results are available for this feature:
BLAST of CV884966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NOTUM_MOUSE3.495e-1731.43Protein notum homolog OS=Mus musculus GN=Notum PE=... [more]
NOTUM_HUMAN1.017e-1630.86Protein notum homolog OS=Homo sapiens GN=NOTUM PE=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011F08_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884966 ID=CV884966; Name=CV884966; organism=Citrus sinensis; type=EST; length=815bp
CTTTGATCCTTTCTCCTTGAGCTCCCAAAAAATTGCCATTACTATTTCTT
CCCAATGCACTAACCTGGGCTCCTTTTGCAAACTCTTTAAACTAGTCCCA
TTTGCAATTGTTTTTTTTGCCTCATTTCAGAATGGTTGCTGCAAGAATGG
GCCAATGGTTGAATCTTTTAGTATGTGCACTCATATTACTGAAAGCTGAC
GGCTTTAATGTAGGAATCACATATGTTGAGAATGCTGTAGTGAAAGGAGC
TGTTTGTTTGGATGGTAGCCCGCCTGCTTACCATTTTGATAAGGGGTTTG
GTGCTGGGATCAATAATTGGTTGGTTCACATTGAGGGAGGAGGATGGTGC
AACAATGTCACAACTTGTCTTGAACGTAAGAAAACCCGTTTAGGTTCATC
TAAGCAAATGGTCAAGGTAGTTGCATTCTCTGGGATGCTGAGCAACAAGC
AAAAATTTAACCCAGACTTCTACAATTGGAATAGAATCAAGGTTAGATAC
TGTGATGGGGCATCGTTTACTGGAGATGTGGAGGCTGTCAATCCAGCAAA
TAACCTTCACTTCAGAGGAGCAAGGGTTTTTCAAGCTGTCATGGAGGATC
TAATGGCTAAAGGGATGAAAAATGCTCAAAATGCTGTTCTTTCTGGCTGC
TCAGCTGGGGGATTGACTTCAATTTTGCATTGTGATAACTTCCGAGCTCT
CTTCCCTGTGGGTACTAAAGTAAAATGCTTTGCAAATGCTGGTTATTTTA
TCAACGCGAAGGATGTTTCTGGAGCAAGTCACATTGAGCAGTTTTATGCT
CAAGTGGTCGCAACA
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