CV884959

Overview
NameCV884959
Unique NameCV884959
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length960
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11169 contig Csv1_Contig11169:1256..2215. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884959 vs. ExPASy Swiss-Prot
Match: MTHR2_ARATH (Methylenetetrahydrofolate reductase 2 OS=Arabidopsis thaliana GN=MTHFR2 PE=1 SV=2)

HSP 1 Score: 387.111 bits (993), Expect = 8.010e-107
Identity = 185/231 (80.09%), Postives = 202/231 (87.45%), Query Frame = -1
Query:  268 ALSDHQFMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLGKLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKALPFITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDYINGDLFTVFADL 960
            ALSDHQF RPR+RDKKL +EW VPLKSVEDI EKFK  CLG L+SSPWSELDGLQPET+IINEQL K+N KGFLTINSQP+VN ERSDS +VGWGGP GYVYQKAYLEFFCS EKL A+V+K KALP IT+MAVNK   W +N  Q DVNAVTWGVFPAKEIIQPT+VDPASF VWKDEAFE WSRSWA+LYPE D SR LLEEV++SYYLVSLV+NDYINGD+F VFADL
Sbjct:  364 ALSDHQFSRPRARDKKLQQEWVVPLKSVEDIQEKFKELCLGNLKSSPWSELDGLQPETRIINEQLIKVNSKGFLTINSQPSVNAERSDSPTVGWGGPVGYVYQKAYLEFFCSKEKLDAVVEKCKALPSITYMAVNKGEQWVSNTAQADVNAVTWGVFPAKEIIQPTIVDPASFNVWKDEAFETWSRSWANLYPEADPSRNLLEEVKNSYYLVSLVENDYINGDIFAVFADL 594          
BLAST of CV884959 vs. ExPASy Swiss-Prot
Match: MTHR1_ARATH (Methylenetetrahydrofolate reductase 1 OS=Arabidopsis thaliana GN=MTHFR1 PE=1 SV=1)

HSP 1 Score: 386.341 bits (991), Expect = 1.366e-106
Identity = 178/228 (78.07%), Postives = 203/228 (89.04%), Query Frame = -1
Query:  274 LSDHQFMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLGKLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKALPFITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDYINGDLFTVFA 957
            LSD+QF RP+ RDKKL +EW VPLKS+ED+ EKFK  C+G L+SSPWSELDGLQPETKIINEQLGKIN  GFLTINSQP+VN  +SDS ++GWGGPGGYVYQKAYLEFFCS +KL  LV+KSKA P IT+MAVNK  NW +N  ++DVNAVTWGVFPAKE+IQPT+VDPASFKVWKDEAFEIWSRSWA+LYPE D SRKLLEEV++SYYLVSLVDN+YINGD+F+VFA
Sbjct:  365 LSDYQFARPKGRDKKLQQEWVVPLKSIEDVQEKFKELCIGNLKSSPWSELDGLQPETKIINEQLGKINSNGFLTINSQPSVNAAKSDSPAIGWGGPGGYVYQKAYLEFFCSKDKLDTLVEKSKAFPSITYMAVNKSENWVSNTGESDVNAVTWGVFPAKEVIQPTIVDPASFKVWKDEAFEIWSRSWANLYPEDDPSRKLLEEVKNSYYLVSLVDNNYINGDIFSVFA 592          
BLAST of CV884959 vs. ExPASy Swiss-Prot
Match: MTHR_ORYSJ (Probable methylenetetrahydrofolate reductase OS=Oryza sativa subsp. japonica GN=Os03g0815200 PE=2 SV=1)

HSP 1 Score: 369.007 bits (946), Expect = 2.257e-101
Identity = 174/231 (75.32%), Postives = 200/231 (86.58%), Query Frame = -1
Query:  268 ALSDHQFMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLGKLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKALPFITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDYINGDLFTVFADL 960
            AL+D+QF RPR R KKL EEWAVP+KSVEDI E+F N+C GKL SSPWSELDGLQPETKII++QL KIN KGFLTINSQPAVNGERSDS+SVGWGGPGGYVYQKAYLEFFCS EKL  L++KSKA P +T++AVNK+G   +N+    VNAVTWGVFP KEI+QPTVVD ASF VWKDEAFEIWS+ WA L+PEGDSSR++L++VQ SY+LVSLVDNDYINGDLF  F ++
Sbjct:  364 ALTDYQFTRPRGRGKKLQEEWAVPVKSVEDINERFMNFCQGKLTSSPWSELDGLQPETKIIDDQLVKINQKGFLTINSQPAVNGERSDSTSVGWGGPGGYVYQKAYLEFFCSKEKLDQLIEKSKAFPSLTYIAVNKDGESFSNIPTNAVNAVTWGVFPGKEIVQPTVVDSASFMVWKDEAFEIWSKGWACLFPEGDSSREILDKVQKSYFLVSLVDNDYINGDLFAAFKEI 594          
BLAST of CV884959 vs. ExPASy Swiss-Prot
Match: MTHR1_MAIZE (Methylenetetrahydrofolate reductase 1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 361.688 bits (927), Expect = 3.604e-99
Identity = 170/228 (74.56%), Postives = 194/228 (85.09%), Query Frame = -1
Query:  277 ALSDHQFMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLGKLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKALPFITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDYINGDLFTVF 960
            AL+DHQF RPR R KKL EEWAVPLKSVEDI E+F N+C GKL SSPWSELDGLQPETKII++QL  IN KGFLTINSQPAVNGE+SDS +VGWGGPGGYVYQKAYLEFFC+ EKL  L++K KA P +T++AVNK+G   +N++   VNAVTWGVFP KEIIQPTVVD ASF VWKDEAFEIW+R W  ++PEGDSSR+LLE+VQ +YYLVSLVDNDY+ GDLF  F
Sbjct:  364 ALTDHQFTRPRGRGKKLQEEWAVPLKSVEDISERFTNFCQGKLTSSPWSELDGLQPETKIIDDQLVNINQKGFLTINSQPAVNGEKSDSPTVGWGGPGGYVYQKAYLEFFCAKEKLDQLIEKIKAFPSLTYIAVNKDGETFSNISPNAVNAVTWGVFPGKEIIQPTVVDHASFMVWKDEAFEIWTRGWGCMFPEGDSSRELLEKVQKTYYLVSLVDNDYVQGDLFAAF 591          
BLAST of CV884959 vs. ExPASy Swiss-Prot
Match: MTHR_HUMAN (Methylenetetrahydrofolate reductase OS=Homo sapiens GN=MTHFR PE=1 SV=3)

HSP 1 Score: 188.734 bits (478), Expect = 4.181e-47
Identity = 96/221 (43.44%), Postives = 134/221 (60.63%), Query Frame = -1
Query:  304 FMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLG-------KLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKALPF-ITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDY 942
            +++ +S  ++L + W   L S E ++E F  Y  G       K+   PW++ + L  ET ++ E+L ++N +G LTINSQP +NG+ S    VGWG  GGYV+QKAYLEFF S E   AL+   K     + +  VN +G    N  +   NAVTWG+FP +EIIQPTVVDP SF  WKDEAF +W   W  LY E   SR +++ +  +Y+LV+LVDND+
Sbjct:  407 YLKSKSPKEELLKMWGEELTSEESVFEVFVLYLSGEPNRNGHKVTCLPWND-EPLAAETSLLKEELLRVNRQGILTINSQPNINGKPSSDPIVGWGPSGGYVFQKAYLEFFTSRETAEALLQVLKKYELRVNYHLVNVKGENITNAPELQPNAVTWGIFPGREIIQPTVVDPVSFMFWKDEAFALWIERWGKLYEEESPSRTIIQYIHDNYFLVNLVDNDF 626          
BLAST of CV884959 vs. ExPASy Swiss-Prot
Match: MTHR_MACFA (Methylenetetrahydrofolate reductase OS=Macaca fascicularis GN=MTHFR PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.217e-46
Identity = 96/221 (43.44%), Postives = 133/221 (60.18%), Query Frame = -1
Query:  304 FMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLG-------KLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKALPF-ITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDY 942
            +++ +S  + L + W   L S E ++E F  Y  G       K+   PW++ + L  ET ++ E+L ++N +G LTINSQP +NG+ S    VGWG  GGYV+QKAYLEFF S E   AL+   K     + +  VN +G    N  +   NAVTWG+FP +EIIQPTVVDP SF  WKDEAF +W   W  LY E   SR +++ +  +Y+LV+LVDND+
Sbjct:  407 YLKSKSPRELLLKMWGEELTSEESVFEVFVLYLSGEPNRNGHKVTCLPWND-EPLAAETSLLKEELLRVNRQGILTINSQPNINGKPSSDPVVGWGPSGGYVFQKAYLEFFTSRETAEALLQVLKKYELRVNYHLVNVKGENITNAPELQPNAVTWGIFPGREIIQPTVVDPISFMFWKDEAFALWIEQWGKLYEEESPSRTIIQYIHDNYFLVNLVDNDF 626          
BLAST of CV884959 vs. ExPASy Swiss-Prot
Match: MTHR_BOVIN (Methylenetetrahydrofolate reductase OS=Bos taurus GN=MTHFR PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 4.623e-46
Identity = 92/221 (41.63%), Postives = 136/221 (61.54%), Query Frame = -1
Query:  304 FMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLG-------KLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKALPF-ITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDY 942
            +++ +S  ++L + W   L S E +++ F ++  G       K+   PW++ + L  ET ++ E+L ++N +G LTINSQP +NG+ S    VGWG  GGYV+QKAYLEFF S E + AL+   K     + +  V+ +G    N  +   NAVTWG+FP +EIIQPTVVDP SF  WKDEAF +W   W  LY E   SR +++ +  +Y+LV+LVDN++
Sbjct:  406 YLKSKSPKEELLKMWGEELTSEESVFQVFAHHLSGEPNQNGYKVTCLPWND-EPLAAETSLMKEELLRVNRRGILTINSQPNINGKPSSDPIVGWGPSGGYVFQKAYLEFFTSRETVEALLQVLKKYELRVNYHIVDVKGENITNAPELQPNAVTWGIFPGREIIQPTVVDPVSFMFWKDEAFALWIEQWGKLYEEESPSRMIIQYIHDNYFLVNLVDNEF 625          
BLAST of CV884959 vs. ExPASy Swiss-Prot
Match: MTHR1_SCHPO (Methylenetetrahydrofolate reductase 1 OS=Schizosaccharomyces pombe GN=met9 PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 6.038e-46
Identity = 98/219 (44.75%), Postives = 128/219 (58.45%), Query Frame = -1
Query:  277 RSRDKKLHEEWAVPLKSVEDIYEKFKNYCLGKLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKALPFITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDYING-DLFTVF 930
            R   K++   W  P KS  +I + F  YC  K+ S PWS+L  +  E  +I +QL  +N   FLTINSQPA+NGE+S     GWG P GYV+QK Y+EFF  P  L  L +  K L  +++   NK G+   N      NAVTWGVFP +EIIQPT+V+  SF  WKDEA+ +    WA+ Y     SRKLL  +   ++L  +VDND+ NG  LF VF
Sbjct:  369 RMSPKEITTSWGSP-KSYSEIGDLFARYCEKKISSLPWSDLP-ISDEADLIRDQLLSMNRNAFLTINSQPALNGEKSSHPVFGWGPPNGYVFQKPYVEFFVHPSLLNELKETVKKLNSVSYFVTNKNGDLDTNSQYEIPNAVTWGVFPNREIIQPTIVESTSFLAWKDEAYSL-GMEWANAYSPDSISRKLLVSMMKEWFLCVIVDNDFQNGQSLFDVF 584          
BLAST of CV884959 vs. ExPASy Swiss-Prot
Match: MTHR_MOUSE (Methylenetetrahydrofolate reductase OS=Mus musculus GN=Mthfr PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.345e-45
Identity = 92/221 (41.63%), Postives = 135/221 (61.09%), Query Frame = -1
Query:  304 FMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLG-------KLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKALPF-ITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDY 942
            +++ +S  ++L + W   L S E ++E F++Y  G       ++   PW++ + L  ET ++ E+L ++N  G LTINSQP +N + S    VGWG  GGYV+QKAYLEFF S E + AL+   K     + +  V+ +G    N  +   NAVTWG+FP +EIIQPTVVDP SF  WKDEAF +W   W  LY E   SR +++ +  +Y+LV+LVDN++
Sbjct:  406 YLKSKSPREELLKMWGEELTSEESVFEVFEHYLSGEPNRHGYRVTCLPWND-EPLAAETSLMKEELLRVNRLGILTINSQPNINAKPSSDPVVGWGPSGGYVFQKAYLEFFTSRETVEALLQVLKTYELRVNYHIVDVKGENITNAPELQPNAVTWGIFPGREIIQPTVVDPISFMFWKDEAFALWIEQWGKLYEEESPSRMIIQYIHDNYFLVNLVDNEF 625          
BLAST of CV884959 vs. ExPASy Swiss-Prot
Match: MTHR_CAEEL (Probable methylenetetrahydrofolate reductase OS=Caenorhabditis elegans GN=C06A8.1 PE=1 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 2.805e-43
Identity = 92/207 (44.44%), Postives = 127/207 (61.35%), Query Frame = -1
Query:  304 LKSVEDIYEKFKNYCLG-------KLRSSPWSELD-GLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPE---KLTALVDKSKALPFITFMAVNKEGNW-KANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDY 888
            ++S ED+   F NY          K+   PW+E + G+QPET +I+EQL   N  G LT+NSQP+VNG  S    VGWG PGGY YQKAYLE F + E   KL  ++++   +  + + A+NK+  + K N  +T   AVTWGVFP  EI QPTVVDP SF+ W+DEA+++W   W   YP+   S  +++ V   + LV+LVDND+
Sbjct:  439 IESFEDVKRVFINYITQAPNADGVKVTVLPWTEAETGVQPETSLISEQLVWCNENGILTVNSQPSVNGAPSTDPLVGWGKPGGYCYQKAYLECFMTAELSDKLIQIIEREFPVR-VNYHAINKDSTFDKTNSEETTPIAVTWGVFPGSEIAQPTVVDPLSFRAWRDEAYQMWMAQWGDFYPKESKSYGVIKAVHDEFRLVTLVDNDF 644          
The following BLAST results are available for this feature:
BLAST of CV884959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
MTHR2_ARATH8.010e-10780.09Methylenetetrahydrofolate reductase 2 OS=Arabidops... [more]
MTHR1_ARATH1.366e-10678.07Methylenetetrahydrofolate reductase 1 OS=Arabidops... [more]
MTHR_ORYSJ2.257e-10175.32Probable methylenetetrahydrofolate reductase OS=Or... [more]
MTHR1_MAIZE3.604e-9974.56Methylenetetrahydrofolate reductase 1 OS=Zea mays ... [more]
MTHR_HUMAN4.181e-4743.44Methylenetetrahydrofolate reductase OS=Homo sapien... [more]
MTHR_MACFA1.217e-4643.44Methylenetetrahydrofolate reductase OS=Macaca fasc... [more]
MTHR_BOVIN4.623e-4641.63Methylenetetrahydrofolate reductase OS=Bos taurus ... [more]
MTHR1_SCHPO6.038e-4644.75Methylenetetrahydrofolate reductase 1 OS=Schizosac... [more]
MTHR_MOUSE1.345e-4541.63Methylenetetrahydrofolate reductase OS=Mus musculu... [more]
MTHR_CAEEL2.805e-4344.44Probable methylenetetrahydrofolate reductase OS=Ca... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011F04_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884959 ID=CV884959; Name=CV884959; organism=Citrus sinensis; type=EST; length=960bp
CGCTCATTTTCGATTGCAACTTCCATTGACAATAATTAGGAGCGATTCAA
TAGAATGAAAGCTGCCAATTTAATTTGCATGGAGCATCAGGGAGGTATCA
AAATCCCTATCATCTTATTAATACAATCAGTAAGCTTGTAATTTTGGATA
AATTTCAATTGAAATTAACTTGAGAGAAGGCAACACTTCAAATGGCTTCA
GTGAGGGTACAAGATGACCATTGATGAAATCAGGTTGTAATTCCATGGAG
TACAGCAGCTTAACCTAGAGATCGGCAAAAACAGTAAAAAGATCCCCATT
GATGTAATCATTATCCACCAAGCTGACCAAATAATAGCTGCTCTGCACCT
CTTCGAGCAATTTTCTTGATGAGTCTCCCTCGGGGTACAATGAAGCCCAT
GATCTTGACCAAATTTCGAATGCCTCATCCTTCCACACCTTGAAGCTGGC
AGGGTCAACAACAGTCGGTTGGATAATCTCCTTGGCTGGGAAGACCCCCC
AAGTTACGGCATTCACATCAGTTTGATTAACATTGGCTTTCCAGTTCCCT
TCTTTGTTGACAGCCATGAAGGTTATGAATGGAAGAGCTTTGCTTTTGTC
AACAAGTGCAGTCAACTTCTCTGGTGAGCAGAAAAACTCTAGATATGCTT
TCTGATAAACATATCCTCCTGGCCCACCCCAACCAACAGAAGATGAATCG
GATCTTTCACCATTGACTGCCGGCTGGCTGTTGATAGTGAGGAAACCTTT
CACATTGATCTTTCCAAGCTGTTCATTTATGATTTTGGTCTCTGGCTGAA
GCCCGTCTAACTCTGACCAAGGACTGCTTCTCAATTTCCCAAGGCAGTAA
TTCTTAAATTTTTCATAGATATCTTCAACACTTTTCAAGGGGACAGCCCA
TTCTTCATGAAGTTTCTTGTCACGTGAACGAGGCCGCATAAACTGATGGT
CAGATAAAGC
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