CV884921

Overview
NameCV884921
Unique NameCV884921
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length502
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CV884921 vs. ExPASy Swiss-Prot
Match: PSD7_ARATH (Probable 26S proteasome non-ATPase regulatory subunit 7 OS=Arabidopsis thaliana GN=RPN8 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.243e-20
Identity = 51/68 (75.00%), Postives = 54/68 (79.41%), Query Frame = -1 
Query:  296 VFNLLPNLNVAELIKAFSVKTNDMMLVIYLSSLIRSVIALHXXXXXXXXXKEHEKTEDAKPTAVPTAS 499
            VFNLLPNLNV EL+KAFSVKTNDMMLVIYLSSLIRSVIALH         KEHEK ED+KP A+P  S
Sbjct:  241 VFNLLPNLNVNELVKAFSVKTNDMMLVIYLSSLIRSVIALHNLINNKLLNKEHEKAEDSKPVAIPATS 308
The following BLAST results are available for this feature:
BLAST of CV884921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PSD7_ARATH2.243e-2075.00Probable 26S proteasome non-ATPase regulatory subu... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011D07_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884921 ID=CV884921; Name=CV884921; organism=Citrus sinensis; type=EST; length=502bp
ATTTAGACAGGCAAGAAATATGTAATCCATCTGCATCAAAATAAAAATTT
GGAAAAATAAAGAAAAATGAACAGCAAAAAGGGGTATGAATCGCAAGCTT
TTTGGAGCACAGTTATCTCTGATGATGCTCAGTAGAAGAAAACTGTCGGC
AAATGTAACCTCTCACATTCGACATATAACTGGCTCCACCTAACCACACA
CTCCCCCAACCCCACCACCTCTCTTCCATTTTCAAATGCCCCAGTTCGGT
AATGGCTGAAAGCCCCAAAGCACAACAAACTTGATTTTAACTTGAACTGG
CAGTTGGAACTGCCGTTGGCTTTGCGTCCTCAGTCTTTTCGTGTTCTTTG
TTCAAAATCTTGTTATTGATTAAGTTATGCAGTGCAATAACACTCCGGAT
GAGGGACGAAAGATATATAACCAACATCATATCATTTGTTTTTACTGAAA
AGGCCTTGATTAATTCAGCCACATTCAGATTCGGTAAAAGGTTAAACACC
CT
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