CV884900

Overview
NameCV884900
Unique NameCV884900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884900 vs. ExPASy Swiss-Prot
Match: GOT1B_MOUSE (Vesicle transport protein GOT1B OS=Mus musculus GN=Golt1b PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.685e-20
Identity = 45/100 (45.00%), Postives = 64/100 (64.00%), Query Frame = 3
Query:  228 DKGLLAMGNILFIAGVSLTIGLKSTMQFFMKRQNYKGTISXXXXXXXXXXXWPILGMILETYGFIVLFSGFWPTLSVFLQRIPILGWLFQQPFVRSFFDR 527
            DK LLA+GN+LF+AG++  IGL+ T +FF +R   K T             WP++GMI E YGF +LF GF+P +  F++R+P+LG L   P +RSF D+
Sbjct:   31 DKALLAIGNVLFVAGLAFVIGLERTFRFFFQRHKVKATGFFLGGVFVVLIGWPLIGMIFEIYGFFLLFRGFFPVVVGFIRRVPVLGSLLNLPGIRSFVDK 130          
BLAST of CV884900 vs. ExPASy Swiss-Prot
Match: GOT1B_HUMAN (Vesicle transport protein GOT1B OS=Homo sapiens GN=GOLT1B PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.982e-20
Identity = 44/100 (44.00%), Postives = 64/100 (64.00%), Query Frame = 3
Query:  228 DKGLLAMGNILFIAGVSLTIGLKSTMQFFMKRQNYKGTISXXXXXXXXXXXWPILGMILETYGFIVLFSGFWPTLSVFLQRIPILGWLFQQPFVRSFFDR 527
            DK LLA+GN+LF+AG++  IGL+ T +FF ++   K T             WP++GMI E YGF +LF GF+P +  F++R+P+LG L   P +RSF D+
Sbjct:   31 DKALLAIGNVLFVAGLAFVIGLERTFRFFFQKHKMKATGFFLGGVFVVLIGWPLIGMIFEIYGFFLLFRGFFPVVVGFIRRVPVLGSLLNLPGIRSFVDK 130          
BLAST of CV884900 vs. ExPASy Swiss-Prot
Match: GOT1B_BOVIN (Vesicle transport protein GOT1B OS=Bos taurus GN=GOLT1B PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.982e-20
Identity = 44/100 (44.00%), Postives = 64/100 (64.00%), Query Frame = 3
Query:  228 DKGLLAMGNILFIAGVSLTIGLKSTMQFFMKRQNYKGTISXXXXXXXXXXXWPILGMILETYGFIVLFSGFWPTLSVFLQRIPILGWLFQQPFVRSFFDR 527
            DK LLA+GN+LF+AG++  IGL+ T +FF ++   K T             WP++GMI E YGF +LF GF+P +  F++R+P+LG L   P +RSF D+
Sbjct:   31 DKALLAIGNVLFVAGLAFVIGLERTFRFFFQKHKMKATGFFLGGVFVVLIGWPLIGMIFEIYGFFLLFRGFFPVVVGFIRRVPVLGSLLNLPGIRSFVDK 130          
BLAST of CV884900 vs. ExPASy Swiss-Prot
Match: GOT1A_BOVIN (Vesicle transport protein GOT1A OS=Bos taurus GN=GOLT1A PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.012e-16
Identity = 45/94 (47.87%), Postives = 54/94 (57.45%), Query Frame = 3
Query:  228 DKGLLAMGNILFIAGVSLTIGLKSTMQFFMKRQNYKGTISXXXXXXXXXXXWPILGMILETYGFIVLFSGFWPTLSVFL---QRIPILGWLFQQ 500
            D  LLA GN+LF+ G+SL IGL+ T  FF +R  +KGT             WP+LGM LETYGF  LF GF+P    FL     IP L  LFQ+
Sbjct:   31 DSVLLAFGNLLFLTGLSLIIGLRRTFSFFFQRHKFKGTSFFLGGVVIVLLRWPLLGMCLETYGFFSLFRGFFPVAFGFLGSASNIPFLSALFQR 124          
BLAST of CV884900 vs. ExPASy Swiss-Prot
Match: GOT1A_MOUSE (Vesicle transport protein GOT1A OS=Mus musculus GN=Golt1a PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.240e-16
Identity = 45/94 (47.87%), Postives = 55/94 (58.51%), Query Frame = 3
Query:  228 DKGLLAMGNILFIAGVSLTIGLKSTMQFFMKRQNYKGTISXXXXXXXXXXXWPILGMILETYGFIVLFSGFWPTLSVFLQ---RIPILGWLFQQ 500
            D  LLA GN+LF+ G+SL IGL+ T  FF +R   KGT             WP+LGM+LE YGFI LF GF+P +  FL     IP L  LFQ+
Sbjct:   31 DSVLLAFGNLLFLTGLSLIIGLRRTFAFFFQRHKLKGTSFFLGGVAIVLLRWPLLGMLLEAYGFISLFKGFFPVVFGFLGSAFNIPFLSTLFQK 124          
BLAST of CV884900 vs. ExPASy Swiss-Prot
Match: GOT1A_HUMAN (Vesicle transport protein GOT1A OS=Homo sapiens GN=GOLT1A PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.938e-16
Identity = 45/94 (47.87%), Postives = 54/94 (57.45%), Query Frame = 3
Query:  228 DKGLLAMGNILFIAGVSLTIGLKSTMQFFMKRQNYKGTISXXXXXXXXXXXWPILGMILETYGFIVLFSGFWPTLSVFLQ---RIPILGWLFQQ 500
            D  LLA GN+LF+ G+SL IGL+ T  FF +R   KGT             WP+LGM LETYGF  LF GF+P    FL     IP LG LF++
Sbjct:   31 DSVLLAFGNLLFLTGLSLIIGLRKTFWFFFQRHKLKGTSFLLGGVVIVLLRWPLLGMFLETYGFFSLFKGFFPVAFGFLGNVCNIPFLGALFRR 124          
BLAST of CV884900 vs. ExPASy Swiss-Prot
Match: GOT1_CAEEL (Probable Golgi transport protein 1 OS=Caenorhabditis elegans GN=F41C3.4 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.905e-14
Identity = 43/132 (32.58%), Postives = 66/132 (50.00%), Query Frame = 3
Query:  132 MVSFEMNDRKKXXXXXXXXXXXXXXXXXXXXXDKGLLAMGNILFIAGVSLTIGLKSTMQFFMKRQNYKGTISXXXXXXXXXXXWPILGMILETYGFIVLFSGFWPTLSVFLQRIPILGWLFQQPFVRSFFDR 527
            M++FE++  K+                     D  LLA+GN+LFI G++  IG++ T+ FF + +  KG+I            +P+ GMI E +GFIVLF GF P +   L+ IP +  +   P +R   DR
Sbjct:    1 MMNFEVSTTKQIGVGLTTFGFFFIFLGVLMFLDSALLAIGNLLFIVGITFIIGVQRTLVFFFEFRKLKGSILFFGGILVVLFGYPLFGMIAECWGFIVLFGGFLPGIVNLLRSIPGISTITYLPGIRQVLDR 132          
BLAST of CV884900 vs. ExPASy Swiss-Prot
Match: GOT1_DICDI (Protein transport protein got1 homolog OS=Dictyostelium discoideum GN=golt1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.691e-12
Identity = 33/101 (32.67%), Postives = 58/101 (57.43%), Query Frame = 3
Query:  228 DKGLLAMGNILFIAGVSLTIGLKSTMQFFMKRQNYKGTI-SXXXXXXXXXXXWPILGMILETYGFIVLFSGFWPTLSVFLQRIPILGWLFQQPFVRSFFDR 527
            D+ LLA+GN+L ++G+ L +GL+ T +FF +++  KGTI             W  +GM++E +GF+ LF   +P +   L+++PI+G +   P V     +
Sbjct:   29 DRNLLALGNLLLVSGIVLILGLQKTTKFFAQKKKIKGTILFFFGIVVLLVTRWTFVGMVIEIFGFVNLFGDAFPIVISILRKLPIIGNILNHPLVNRLLQK 129          
BLAST of CV884900 vs. ExPASy Swiss-Prot
Match: GOT1_YEAST (Protein transport protein GOT1 OS=Saccharomyces cerevisiae GN=GOT1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.830e-12
Identity = 37/106 (34.91%), Postives = 55/106 (51.89%), Query Frame = 3
Query:  228 DKGLLAMGNILFIAGVSLTIGLKSTMQFFMKRQNYKGTISXXXXXXXXXXXWPILGMILETYGFIVLFSGFWPTLSVFLQRIPILGWLFQQPFVRSFFDRYRSRRV 545
            D+ LLA+GNILF+ GV L IG + T  FF +    +G++            W  LG I+E+ G I LF  F+  +  FL+ +PI+G +   P +    D+    RV
Sbjct:   30 DRALLALGNILFLIGVFLIIGSQKTYIFFTRPNKRRGSLFFLVGAFLILLKWTFLGFIIESLGIIGLFGDFFGVIVQFLRSMPIIGPILSHPAIAPIVDKLAGVRV 135          
The following BLAST results are available for this feature:
BLAST of CV884900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
GOT1B_MOUSE2.685e-2045.00Vesicle transport protein GOT1B OS=Mus musculus GN... [more]
GOT1B_HUMAN5.982e-2044.00Vesicle transport protein GOT1B OS=Homo sapiens GN... [more]
GOT1B_BOVIN5.982e-2044.00Vesicle transport protein GOT1B OS=Bos taurus GN=G... [more]
GOT1A_BOVIN4.012e-1647.87Vesicle transport protein GOT1A OS=Bos taurus GN=G... [more]
GOT1A_MOUSE5.240e-1647.87Vesicle transport protein GOT1A OS=Mus musculus GN... [more]
GOT1A_HUMAN8.938e-1647.87Vesicle transport protein GOT1A OS=Homo sapiens GN... [more]
GOT1_CAEEL4.905e-1432.58Probable Golgi transport protein 1 OS=Caenorhabdit... [more]
GOT1_DICDI2.691e-1232.67Protein transport protein got1 homolog OS=Dictyost... [more]
GOT1_YEAST7.830e-1234.91Protein transport protein GOT1 OS=Saccharomyces ce... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011C09_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884900 ID=CV884900; Name=CV884900; organism=Citrus sinensis; type=EST; length=712bp
GCAGAACTTTGCGATCAATTGCTATTTTCATTTTTTTTTCCAGGCGCGCA
ATAGATCAATCGAGCTCGTTTTTTTTTCTTTTTCACAGATTTAGCAAAGC
GAAGGTGACGAGTTCTTGAATCGGCGACACAATGGTTTCGTTTGAAATGA
ATGATCGTAAAAAGATTGGGCTGGGGTTGACAGGATTTGGCATTTTTTTC
ACATTCTTGGGAATCATCTTTTTCTTCGACAAGGGACTACTTGCCATGGG
AAATATTCTCTTCATTGCAGGGGTGTCTCTTACTATTGGTTTGAAGTCGA
CCATGCAATTCTTTATGAAACGTCAGAATTATAAGGGAACTATCTCTTTT
GGTGTTGGCTTCTTCTTTGTTGTTATCGGATGGCCAATTTTGGGAATGAT
TCTTGAGACATATGGCTTCATTGTACTCTTCAGTGGCTTCTGGCCTACAC
TCTCAGTTTTCTTGCAGAGGATACCCATTCTTGGTTGGTTGTTCCAACAG
CCATTTGTCAGATCGTTCTTTGACAGGTACCGAAGCAGACGGGTGCCGGT
GTAATTCTGCTATTAAAGGAAGTACAATGTAGCGATGAGTCCACTTGTAA
AAATACTGCAGGATGAAAAGTAAAAGATTGAAAAAAAAAATCTTTAATTT
TTGTTAGAGTGTTGATTGTAGAAATTGAATCTCACTTGACAGCAAACTAA
ACCTTCAACCAA
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