CX673790

Overview
NameCX673790
Unique NameCX673790
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length756
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX673790 vs. ExPASy Swiss-Prot
Match: RL10_VITRI (60S ribosomal protein L10 OS=Vitis riparia GN=RPL10 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.335e-19
Identity = 45/77 (58.44%), Postives = 56/77 (72.73%), Query Frame = -2
Query:  141 NTHIYMNALLRSCLGLLSHYCIIMLVFRGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEATT 371
            N+H    AL R+     +   II+    GFTKF+R DY++WKS+NRI+PDGVNAKLLGCHGPLA RQPG+AF+ A T
Sbjct:  144 NSHHAQEALRRAKFKFPARQKIIVSRKWGFTKFNRTDYIKWKSQNRILPDGVNAKLLGCHGPLANRQPGKAFINACT 220          
BLAST of CX673790 vs. ExPASy Swiss-Prot
Match: RL10_TOBAC (60S ribosomal protein L10 (Fragment) OS=Nicotiana tabacum GN=RPL10 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.383e-17
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = -2
Query:  147 GFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 287
            GFTKFSR DYL++KSENRIVPDGVNAKLLGCHG LA RQPGRAFLEA
Sbjct:  101 GFTKFSRTDYLKYKSENRIVPDGVNAKLLGCHGRLAARQPGRAFLEA 147          
BLAST of CX673790 vs. ExPASy Swiss-Prot
Match: RL10_SOLME (60S ribosomal protein L10 OS=Solanum melongena GN=RPL10 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.530e-16
Identity = 46/76 (60.53%), Postives = 54/76 (71.05%), Query Frame = -2
Query:  144 NTHIYMNALLRSCLGLLSHYCIIMLVFRGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEAT 371
            N++    AL R+         II+    GFTKFSR DYL++KSENRIVPDGVNAKLLG HGPLA RQPGRAFL ++
Sbjct:  144 NSNHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRTDYLKYKSENRIVPDGVNAKLLGNHGPLAARQPGRAFLSSS 219          
BLAST of CX673790 vs. ExPASy Swiss-Prot
Match: RL10_EUPES (60S ribosomal protein L10 OS=Euphorbia esula GN=RPL10 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.914e-16
Identity = 44/75 (58.67%), Postives = 52/75 (69.33%), Query Frame = -2
Query:  147 NTHIYMNALLRSCLGLLSHYCIIMLVFRGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 371
            N+H    AL R+         II+    GFTK +RADY R KSENRI+PDGVNAKLLGCHG LA R+PGRAF++A
Sbjct:  144 NSHNAQEALRRAKFKFPGRQKIIVSRKWGFTKINRADYPRLKSENRILPDGVNAKLLGCHGRLANRKPGRAFIDA 218          
BLAST of CX673790 vs. ExPASy Swiss-Prot
Match: RL10_PINTA (60S ribosomal protein L10 OS=Pinus taeda GN=RPL10 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.691e-15
Identity = 35/46 (76.09%), Postives = 43/46 (93.48%), Query Frame = -2
Query:  150 GFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLE 287
            GFTK++RADYL+WK+ENRIVPDGVN KLLGC GPL+ R+PG+AFL+
Sbjct:  172 GFTKYTRADYLKWKTENRIVPDGVNPKLLGCRGPLSNRKPGQAFLK 217          
BLAST of CX673790 vs. ExPASy Swiss-Prot
Match: RL102_ARATH (60S ribosomal protein L10-2 OS=Arabidopsis thaliana GN=RPL10B PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 5.440e-14
Identity = 41/73 (56.16%), Postives = 46/73 (63.01%), Query Frame = -2
Query:  147 HIYMNALLRSCLGLLSHYCIIMLVFRGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 365
            H    AL R+         II+    GFTKF+RADY + + E RIVPDGVNAK L CHGPLA RQPG AFL A
Sbjct:  146 HHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADYTKLRQEKRIVPDGVNAKFLSCHGPLANRQPGSAFLSA 218          
BLAST of CX673790 vs. ExPASy Swiss-Prot
Match: RL10_MAIZE (60S ribosomal protein L10 OS=Zea mays GN=RPL10 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.583e-13
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = -2
Query:  147 GFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 287
            GFTKFSRADYL++KSE RIVPDGVNAKLL  HG L +R PG+AFL+A
Sbjct:  172 GFTKFSRADYLKYKSEGRIVPDGVNAKLLANHGRLEKRAPGKAFLDA 218          
BLAST of CX673790 vs. ExPASy Swiss-Prot
Match: RL102_ORYSJ (60S ribosomal protein L10-2 OS=Oryza sativa subsp. japonica GN=SG12 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.067e-13
Identity = 35/47 (74.47%), Postives = 40/47 (85.11%), Query Frame = -2
Query:  147 GFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 287
            GFTKFSR +Y+R KSE RI+PDGVNAKLLGCHG L+ R PG+AFL A
Sbjct:  172 GFTKFSRDEYVRLKSEGRIMPDGVNAKLLGCHGRLSARAPGKAFLSA 218          
BLAST of CX673790 vs. ExPASy Swiss-Prot
Match: RL102_ORYSI (60S ribosomal protein L10-2 OS=Oryza sativa subsp. indica GN=SG12 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.067e-13
Identity = 35/47 (74.47%), Postives = 40/47 (85.11%), Query Frame = -2
Query:  147 GFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 287
            GFTKFSR +Y+R KSE RI+PDGVNAKLLGCHG L+ R PG+AFL A
Sbjct:  172 GFTKFSRDEYVRLKSEGRIMPDGVNAKLLGCHGRLSARAPGKAFLSA 218          
BLAST of CX673790 vs. ExPASy Swiss-Prot
Match: RL101_ARATH (60S ribosomal protein L10-1 OS=Arabidopsis thaliana GN=RPL10A PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.700e-13
Identity = 39/73 (53.42%), Postives = 46/73 (63.01%), Query Frame = -2
Query:  147 HIYMNALLRSCLGLLSHYCIIMLVFRGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 365
            H    AL R+         II+    GFTKF+RAD+ + + E R+VPDGVNAK L CHGPLA RQPG AFL A
Sbjct:  146 HHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADFTKLRQEKRVVPDGVNAKFLSCHGPLANRQPGSAFLPA 218          
The following BLAST results are available for this feature:
BLAST of CX673790 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
RL10_VITRI7.335e-1958.4460S ribosomal protein L10 OS=Vitis riparia GN=RPL1... [more]
RL10_TOBAC1.383e-1789.3660S ribosomal protein L10 (Fragment) OS=Nicotiana ... [more]
RL10_SOLME1.530e-1660.5360S ribosomal protein L10 OS=Solanum melongena GN=... [more]
RL10_EUPES9.914e-1658.6760S ribosomal protein L10 OS=Euphorbia esula GN=RP... [more]
RL10_PINTA1.691e-1576.0960S ribosomal protein L10 OS=Pinus taeda GN=RPL10 ... [more]
RL102_ARATH5.440e-1456.1660S ribosomal protein L10-2 OS=Arabidopsis thalian... [more]
RL10_MAIZE1.583e-1376.6060S ribosomal protein L10 OS=Zea mays GN=RPL10 PE=... [more]
RL102_ORYSJ2.067e-1374.4760S ribosomal protein L10-2 OS=Oryza sativa subsp.... [more]
RL102_ORYSI2.067e-1374.4760S ribosomal protein L10-2 OS=Oryza sativa subsp.... [more]
RL101_ARATH2.700e-1353.4260S ribosomal protein L10-1 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_24H03_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-24H03-O6-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX673790 ID=CX673790; Name=CX673790; organism=Citrus sinensis; type=EST; length=756bp
TTTTTTTTTTTTTTTTTAAACCAAATAAACATGTCACTTCAACTTGAGAA
ATCCAGTTCAACTGAGAAAAGGTACGAAATGGAAAATAATAAACTAGACA
GTAGTCACAGCTCTGCTATTTTGAGACAGTAAATATCTTAGGTTGTTGCT
TCCAGGAAAGCTCTTCCAGGTTGGCGTTGAGCCAAAGGACCATGACATCC
GAGAAGCTTGGCATTCACACCATCTGGGACAATCCTGTTCTCCGACTTCC
ACCTCAGATAATCAGCACGGCTGAACTTGGTAAATCCCCTAAAAACAAGC
ATAATTATGCAATAGTGAGAAAGTAAACCCAAACAAGATCTTAAGAGAGC
ATTCATATAGATATGGGTATTTTAAAAAAAAAAAGCACGATCAGCCTAGA
ATAAACAAATAGAAATTCAATCTAACACTCATATGTCCCTAAAGCTCCAT
TACACTACCTGAAGTTAATTTTTTAAACCCAAACCTAGAGACTACCAGCA
ACAGGCATCTAATTGATTGTGTTTTTTCTTTAAAAAAGAAAAAAGAAAAA
AATTTAAATAAGGGTAGATTTTTTAAACTCACTACTAGAGACACCAGCAC
CAGGCAACTTAATCCATGTGATCTGCTAATCTTGTGACACGCCAATCCAT
ATAATACAAGCAAATACGAGTTAACTTTAACATGAATGCAGTCATGGATA
AAAACGCATACCATTTCCTGCTGACAATAATCTTTTGACGACCAGGAAAC
TTGAAC
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