CV884801

Overview
NameCV884801
Unique NameCV884801
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length824
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig756 contig Csv1_Contig756:10..833. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CV884801 vs. ExPASy Swiss-Prot
Match: Y4844_ARATH (Uncharacterized protein At4g28440 OS=Arabidopsis thaliana GN=At4g28440 PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.446e-43
Identity = 88/132 (66.67%), Postives = 105/132 (79.55%), Query Frame = -2 
Query:  347 RKPVFTKVDQLRPGTSGHTLTVKVVSTKMVL---QKGRGDGTQVRQM---RIAECLVGDETGMIIFTARNDQVDLMKEGTTVILRNAKIDMFKGSMRLAVDKWGRVEVAEPANFTVKEDNNLSLIEYELVNV 724
            RKPVF KV+QL+PGT+GHTLTVKV+   +V+   +K R   +  R     RI ECL+GDETG I+FTARNDQVDLMK G TVILRN++IDMFKG+MRL VDKWGR+E    A+FTVKEDNNLSL+EYEL+NV
Sbjct:   18 RKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDNNLSLVEYELINV 149
The following BLAST results are available for this feature:
BLAST of CV884801 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4844_ARATH6.446e-4366.67Uncharacterized protein At4g28440 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010F11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T7_F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884801 ID=CV884801; Name=CV884801; organism=Citrus sinensis; type=EST; length=824bp
TTATATTCCAGTATAATCTAATAGCCAAAGAACAGTTGAGTTCCAAAAAT
AAATAGGTCGCAAACAAACCAAAGACAGTTCTAAATGCCAGCTGCTTTAA
CTTATCAACTTTAGAGCCATCACCATCTGTTTGGAGGTCCAATCAAAAGG
TTCTACTGGATCTGCCACAACGGTAGAAAGCATCTTGGGTAGTAATAGCT
TCCAGATTTCTTCTTCCTAAAGGCAACACAGTTTTGGGCAGGAGATGCCG
CATAAACGACAGTACTATGATATGCTGGATTTCTTTTTATTCTTGGGTCA
CATTGCAGTGAGTAAGTGAACACTGTCCAGAAATTCACTCTTCTACAACA
TTCACAAGCTCATATTCAATCAGAGAGAGGTTGTTATCTTCCTTCACGGT
GAAATTGGCAGGCTCTGCAACTTCAACACGGCCCCACTTGTCCACAGCAA
GTCTCATTGATCCTTTAAACATGTCAATTTTTGCATTGCGCAGAATCACA
GTAGTACCCTCTTTCATCAGGTCCACTTGATCATTTCTAGCAGTAAAGAT
AATCATTCCTGTCTCATCACCAACCAAGCATTCAGCAATTCGCATCTGAC
GTACTTGTGTTCCATCACCACGACCCTTCTGCAATACCATCTTCGTACTC
ACAACCTTCACTGTGAGAGTGTGCCCACTAGTACCTGGGCGTAGCTGATC
AACCTTGGTAAAAACTGGTTTCCTCAATCCTGATTTTGATTCTGCCATTT
CCAGCAAAGCTACAAAACCTGAGTTGAGACACGAAATGATTTTGGGAATT
GAAGGAGGAGAAAGAGTCAAGCCT
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