CV884715

Overview
NameCV884715
Unique NameCV884715
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV884715 vs. ExPASy Swiss-Prot
Match: TBA6_MAIZE (Tubulin alpha-6 chain OS=Zea mays GN=TUBA6 PE=2 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 4.565e-82
Identity = 145/146 (99.32%), Postives = 146/146 (100.00%), Query Frame = -1 
Query:  308 QLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 745
            QLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  285 QLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CV884715 vs. ExPASy Swiss-Prot
Match: TBA5_MAIZE (Tubulin alpha-5 chain OS=Zea mays GN=TUBA5 PE=2 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 4.565e-82
Identity = 145/146 (99.32%), Postives = 146/146 (100.00%), Query Frame = -1 
Query:  308 QLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 745
            QLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  285 QLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CV884715 vs. ExPASy Swiss-Prot
Match: TBA3_ELEIN (Tubulin alpha-3 chain OS=Eleusine indica GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 4.565e-82
Identity = 145/146 (99.32%), Postives = 146/146 (100.00%), Query Frame = -1 
Query:  308 QLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 745
            QLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  285 QLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CV884715 vs. ExPASy Swiss-Prot
Match: TBA1_ORYSJ (Tubulin alpha-1 chain OS=Oryza sativa subsp. japonica GN=TUBA1 PE=1 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 4.565e-82
Identity = 145/146 (99.32%), Postives = 146/146 (100.00%), Query Frame = -1 
Query:  308 QLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 745
            QLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  285 QLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CV884715 vs. ExPASy Swiss-Prot
Match: TBA1_HORVU (Tubulin alpha-1 chain OS=Hordeum vulgare GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 4.565e-82
Identity = 145/146 (99.32%), Postives = 146/146 (100.00%), Query Frame = -1 
Query:  308 QLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 745
            QLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  285 QLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CV884715 vs. ExPASy Swiss-Prot
Match: TBA3_ARATH (Tubulin alpha-3/alpha-5 chain OS=Arabidopsis thaliana GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 1.017e-81
Identity = 144/146 (98.63%), Postives = 145/146 (99.32%), Query Frame = -1 
Query:  308 QLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 745
            QLSVPEITNAVFEP+SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAV TIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  285 QLSVPEITNAVFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CV884715 vs. ExPASy Swiss-Prot
Match: TBA2_ANEPH (Tubulin alpha-2 chain (Fragment) OS=Anemia phyllitidis GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 2.959e-81
Identity = 144/146 (98.63%), Postives = 145/146 (99.32%), Query Frame = -1 
Query:  308 QLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 745
            QLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAK AFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  201 QLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKLAFVHWYVGEGMEEGEFSEAREDLAALEK 346
[Close]
BLAST of CV884715 vs. ExPASy Swiss-Prot
Match: TBA_PRUDU (Tubulin alpha chain OS=Prunus dulcis GN=TUBA PE=2 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 9.519e-80
Identity = 140/146 (95.89%), Postives = 144/146 (98.63%), Query Frame = -1 
Query:  308 QLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 745
            QLSV EITN+ FEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRT+QFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISN+T+VAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  285 QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CV884715 vs. ExPASy Swiss-Prot
Match: TBA1_PEA (Tubulin alpha-1 chain OS=Pisum sativum GN=TUBA1 PE=3 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 9.519e-80
Identity = 140/146 (95.89%), Postives = 144/146 (98.63%), Query Frame = -1 
Query:  308 QLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 745
            QLSV EITN+ FEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRT+QFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISN+T+VAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  285 QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CV884715 vs. ExPASy Swiss-Prot
Match: TBA_AVESA (Tubulin alpha chain OS=Avena sativa GN=TUBA PE=2 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 1.243e-79
Identity = 142/146 (97.26%), Postives = 143/146 (97.95%), Query Frame = -1 
Query:  308 QLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 745
            QLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAV TIKTKRTVQFVD CPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLA LEK
Sbjct:  285 QLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVVTIKTKRTVQFVDXCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAXLEK 430
The following BLAST results are available for this feature:
BLAST of CV884715 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
TBA6_MAIZE4.565e-8299.32Tubulin alpha-6 chain OS=Zea mays GN=TUBA6 PE=2 SV... [more]
TBA5_MAIZE4.565e-8299.32Tubulin alpha-5 chain OS=Zea mays GN=TUBA5 PE=2 SV... [more]
TBA3_ELEIN4.565e-8299.32Tubulin alpha-3 chain OS=Eleusine indica GN=TUBA3 ... [more]
TBA1_ORYSJ4.565e-8299.32Tubulin alpha-1 chain OS=Oryza sativa subsp. japon... [more]
TBA1_HORVU4.565e-8299.32Tubulin alpha-1 chain OS=Hordeum vulgare GN=TUBA1 ... [more]
TBA3_ARATH1.017e-8198.63Tubulin alpha-3/alpha-5 chain OS=Arabidopsis thali... [more]
TBA2_ANEPH2.959e-8198.63Tubulin alpha-2 chain (Fragment) OS=Anemia phyllit... [more]
TBA_PRUDU9.519e-8095.89Tubulin alpha chain OS=Prunus dulcis GN=TUBA PE=2 ... [more]
TBA1_PEA9.519e-8095.89Tubulin alpha-1 chain OS=Pisum sativum GN=TUBA1 PE... [more]
TBA_AVESA1.243e-7997.26Tubulin alpha chain OS=Avena sativa GN=TUBA PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010B06_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T3_B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884715 ID=CV884715; Name=CV884715; organism=Citrus sinensis; type=EST; length=745bp
TTTTTTTTTTTTTTTCTAAATATCACTTCACTGATACCATTAAAAGCACC
ACGAATCACAATATTGGCACAATTTTGAGAGTTCAACAGCAAAAGGAAAT
AGTCTACACGAAAGAAACAAAGCAATAAAAAGGCAAGGGACTAAGCATTG
AGTACAGACCCTCACATTTCTCAACAAATTTCCACATAAATGCCCTTGCA
AAATGTACATATTTCTCATCTTCATAGTTTACAGCAGAAGCAGTACATCA
ATATTCTTCACCATCATCCTCATCATCAACTCCTTCTGCACCAACTTCCT
CATAATCTTTCTCAAGAGCAGCCAGATCTTCACGTGCTTCTGAGAATTCA
CCTTCCTCCATGCCTTCACCAACGTACCAGTGGACGAATGCCCTCTTGGC
ATACATGAGATCGAATTTGTGATCAATGCGAGAGAACACTTCAGCCACTG
CTGTGTTGTTGCTGATCATGCAAACAGCTCGCTGAACCTTGGCCAGGTCA
CCTCCAGGTACAACAGTTGGAGGCTGATAGTTAATACCACATTTGAAGCC
AGTTGGGCACCAGTCAACAAATTGCACGGTCCTCTTAGTTTTGATAGTGG
CAACAGCGGCATTAACATCCTTGGGGACAACATCTCCTCGGTACATCAAG
CAGCAAGCCATGTACTTCCCGTGCCTGGGGTCACATTTGGCCATCATGCT
TGAGGGCTCAAAGACTGCATTTGTGATCTCTGGAACTGAAAGCTG
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