CV884700

Overview
NameCV884700
Unique NameCV884700
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length724
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3361 contig Csv1_Contig3361:1..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884700 vs. ExPASy Swiss-Prot
Match: TCSB_EMENI (Two-component system protein B OS=Emericella nidulans GN=tcsB PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.051e-12
Identity = 48/143 (33.57%), Postives = 73/143 (51.05%), Query Frame = 1
Query:  226 LEGLSVLLVEDQAVLQRIGIRMLKKLGA-GVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLL 651
            L+ +  L+ ED  V Q + +RML       VT+VKDG+ A + +              N+  G          +DLI MD QM ++DG ++TR+IR++      G S PI+A +A     N ++C NSGMD F++KP +   L
Sbjct:  930 LKKIRALVAEDNVVNQEVVLRMLALEDVYDVTVVKDGQEAYDTVKA------------NMEEGKV--------FDLIFMDIQMPNLDGIESTRLIRQM------GCSAPIVALSAFSEDSNIKDCMNSGMDMFISKPIRRPAL 1046          
BLAST of CV884700 vs. ExPASy Swiss-Prot
Match: GACS_PSESY (Sensor protein gacS OS=Pseudomonas syringae pv. syringae GN=gacS PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.052e-11
Identity = 49/143 (34.27%), Postives = 67/143 (46.85%), Query Frame = 1
Query:  241 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVE 669
            VL V+D      +   +L+ +GA V  V+ G AAV A+                             +DL+LMD QM  MDG +AT  IR  EAE     S+PI+A TA   A+ +R    SGMD +L KP  E  LA  +++
Sbjct:  659 VLCVDDNPANLLLVQTLLEDMGAEVVAVEGGYAAVNAV-------------------------QQEAFDLVLMDVQMPGMDGRQATEAIRAWEAERNQS-SLPIVALTAHAMANEKRSLLQSGMDDYLTKPISERQLAQVVLK 775          
BLAST of CV884700 vs. ExPASy Swiss-Prot
Match: DHKK_DICDI (Hybrid signal transduction histidine kinase K OS=Dictyostelium discoideum GN=dhkK PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11
Identity = 52/183 (28.42%), Postives = 84/183 (45.90%), Query Frame = 1
Query:  148 IIPQAEGSSSSCPVNDDVTGVDEKKVLEG-LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQ---SIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 684
            I+P  EG+  S    ++  G   K   +  + VL+ ED  + QR+ ++ L+K+G                 +    AG  +++        LE     HYDLI MD QM  +DG + ++ IR  E   +  +   SI I   TA   + +++ CF+ GM+ F++KP Q   L +AI   I  K
Sbjct: 1047 ILPLEEGTDQSMQQMNN--GARHKAFPQDCVKVLIAEDNIINQRVAVKFLEKIG-----------------IKAEVAGNGNEV--------LEILERQHYDLIFMDFQMPILDGLRCSKTIREFEQNHKWNRICPSIFICGLTANTMSTDKKRCFDHGMNHFISKPFQLEQLRSAIEMAIEHK 1202          
BLAST of CV884700 vs. ExPASy Swiss-Prot
Match: SLN1_YEAST (Osmosensing histidine protein kinase SLN1 OS=Saccharomyces cerevisiae GN=SLN1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.902e-11
Identity = 48/157 (30.57%), Postives = 73/157 (46.50%), Query Frame = 1
Query:  211 DEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGA-GVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 678
            D+ K    + +L+VED  V Q +  RML   G   + L  DG+ A + +  +                    T    +Y++I MD QM  +DG  +T++IRR     + G + PI+A TA     N +EC  SGM+ FL+KP +   L   + E  A
Sbjct: 1080 DDDKNETSVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKEL--------------------TSKGENYNMIFMDVQMPKVDGLLSTKMIRR-----DLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCA 1211          
The following BLAST results are available for this feature:
BLAST of CV884700 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
TCSB_EMENI8.051e-1233.57Two-component system protein B OS=Emericella nidul... [more]
GACS_PSESY1.052e-1134.27Sensor protein gacS OS=Pseudomonas syringae pv. sy... [more]
DHKK_DICDI3.996e-1128.42Hybrid signal transduction histidine kinase K OS=D... [more]
SLN1_YEAST8.902e-1130.57Osmosensing histidine protein kinase SLN1 OS=Sacch... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010A10_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T7_A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884700 ID=CV884700; Name=CV884700; organism=Citrus sinensis; type=EST; length=724bp
CAGCACACACGAGCTTTGGTCTCTTTTGCATACAAATACAATATGTCTAT
TGGCAAAGAGCAAGCTGAAACAACATCCCATCCTGAAAAGCTTGAGCTTG
AGCATGGGCTTCAGCTTGAGTTTAAGCCTGTCCCCGTCACCAATAATATC
ATTCCACAAGCTGAAGGCTCTTCCTCTTCTTGTCCCGTGAATGATGATGT
TACGGGCGTTGATGAGAAGAAAGTTTTGGAAGGCCTAAGCGTTTTGCTTG
TTGAAGATCAAGCAGTACTACAAAGGATAGGAATCAGAATGCTTAAAAAG
CTTGGAGCTGGTGTTACTCTAGTCAAAGATGGAGAGGCTGCCGTTGAAGC
CATGACCCTCATGATCAATGCAGCTGGGAAAAATCATCAAATTCAAAACC
TCCACCATGGATCCAATTTGGAAACTCATAATTCCCCTCACTATGACTTA
ATCCTCATGGACTGCCAAATGGGCAGCATGGATGGCTGTAAAGCAACAAG
AGTAATCAGGAGGCTAGAAGCTGAAGCTGAAACGGGTCAAAGCATTCCCA
TAATTGCATTTACAGCTCTGGTAACCGCAGATAATGAACGAGAATGCTTC
AATTCTGGCATGGATACTTTTCTCAACAAGCCAGCGCAGGAACACCTGTT
GGCTGCCGCCATTGTTGAGACTATTGCTCGTAAAAGTCACAAGTTCTCAT
GTGATGAGCAAGCAGAAGCTCAAG
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