CV884699

Overview
NameCV884699
Unique NameCV884699
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3361 contig Csv1_Contig3361:273..1079. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CV884699 vs. ExPASy Swiss-Prot
Match: GACS_PSESY (Sensor protein gacS OS=Pseudomonas syringae pv. syringae GN=gacS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.261e-11
Identity = 45/127 (35.43%), Postives = 61/127 (48.03%), Query Frame = -2 
Query:  411 MLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVE 791
            +L+ +GA V  V+ G AAV A+                             +DL+LMD QM  MDG +AT  IR  EAE     S+PI+A TA   A+ +R    SGMD +L KP  E  LA  +++
Sbjct:  675 LLEDMGAEVVAVEGGYAAVNAV-------------------------QQEAFDLVLMDVQMPGMDGRQATEAIRAWEAERNQS-SLPIVALTAHAMANEKRSLLQSGMDDYLTKPISERQLAQVVLK 775
The following BLAST results are available for this feature:
BLAST of CV884699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
GACS_PSESY6.261e-1135.43Sensor protein gacS OS=Pseudomonas syringae pv. sy... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010A10_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T3_A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884699 ID=CV884699; Name=CV884699; organism=Citrus sinensis; type=EST; length=807bp
TTATATCGTAAGCAAACAACTTACACAAGTCTCCATATCACAATTACAGT
ACACAAAAACCTTTTACAACAACTCATTAATTATATATAACAACAGTACC
TAAGAAGATAATTAGTTAAAAGCACACACAAACCGCAATAACGTCCACTT
TCTAATAATGCAGCCATAAATAGAAAGTGGGAATTTGGTTCGAAAGCACA
AATTACAACTTACTAATAACAACTAAACATAGCATCATCACAAAGTCCTT
GACCCCAAAACATACGCATGCACTTGTTGAGAACTAAGCACATGACTTTG
ATCTGCAACATTGTTACCCCAGAAGATGCCCTAAGACAACCTGTTTACTT
TTCATCTTGAGCTTCTGCTTGCTCATCACATGAGAACTTGTGACTTTTAC
GAGCAATAGTCTCAACAATGGCGGCAGCCAACAGGTGTTCCTGCGCTGGC
TTGTTGAGAAAAGTATCCATGCCAGAATTGAAGCATTCTCGTTCATTATC
TGCGGTTACCAGAGCTGTAAATGCAATTATGGGAATGCTTTGACCCGTTT
CAGCTTCAGCTTCTAGCCTCCTGATTACTCTTGTTGCTTTACAGCCATCC
ATGCTGCCCATTTGGCAGTCCATGAGGATTAAGTCATAGTGAGGGGAATT
ATGAGTTTCCAAATTGGATCCATGGTGGAGGTTTTGAATTTGATGATTTT
TCCCAGCTGCATTGATCATGAGGGTCATGGCTTCAACGGCAGCCTCTCCA
TCTTTGACTAGAGTAACACCAGCTCCAAGCTTTTTAAGCATTCTGATTCC
TATCCTT
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