CV884694

Overview
NameCV884694
Unique NameCV884694
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6035 contig Csv1_Contig6035:140..1027. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884694 vs. ExPASy Swiss-Prot
Match: PA2G4_MOUSE (Proliferation-associated protein 2G4 OS=Mus musculus GN=Pa2g4 PE=1 SV=3)

HSP 1 Score: 201.83 bits (512), Expect = 4.250e-51
Identity = 111/206 (53.88%), Postives = 141/206 (68.45%), Query Frame = -1
Query:  238 LRLVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSHQLKQFVIDGNKVVLSVSNPDTRVDD--AEFEENEVYAVDIVTSTGDGKPKLLDEKQTTIYKRAVDKNYHLKMKASRFIFSEINQKFPIMPFTARALE-EKRARLGLVECVNHELLQPYPVLHEKPGDYVAHIKFTVLLMPNGSDRITSHALQE--IQSTKTIDDPEIKAWL 840
            LRLV+PG +N  VTEA  KVA + +C  +EG+LSHQLKQ VIDG K ++       + D   AEFE +EVYAVD++ S+G+GK K   ++ TTIYKR   K Y LKMK SR  FSE+ ++F  MPFT RA E EK+AR+G+VEC  HELLQP+ VL+EK G++VA  KFTVLLMPNG  RITS   +    +S   + D E+KA L
Sbjct:  154 LRLVKPGNQNTQVTEAWNKVAHSFNCTPIEGMLSHQLKQHVIDGEKTIIQNPTDQQKKDHEKAEFEVHEVYAVDVLVSSGEGKAKDAGQR-TTIYKRDPSKQYGLKMKTSRAFFSEVERRFDAMPFTLRAFEDEKKARMGVVECAKHELLQPFNVLYEKEGEFVAQFKFTVLLMPNGPMRITSGPFEPDLYKSEMEVQDAELKALL 358          
BLAST of CV884694 vs. ExPASy Swiss-Prot
Match: PA2G4_HUMAN (Proliferation-associated protein 2G4 OS=Homo sapiens GN=PA2G4 PE=1 SV=3)

HSP 1 Score: 201.83 bits (512), Expect = 4.250e-51
Identity = 111/206 (53.88%), Postives = 141/206 (68.45%), Query Frame = -1
Query:  238 LRLVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSHQLKQFVIDGNKVVLSVSNPDTRVDD--AEFEENEVYAVDIVTSTGDGKPKLLDEKQTTIYKRAVDKNYHLKMKASRFIFSEINQKFPIMPFTARALE-EKRARLGLVECVNHELLQPYPVLHEKPGDYVAHIKFTVLLMPNGSDRITSHALQE--IQSTKTIDDPEIKAWL 840
            LRLV+PG +N  VTEA  KVA + +C  +EG+LSHQLKQ VIDG K ++       + D   AEFE +EVYAVD++ S+G+GK K   ++ TTIYKR   K Y LKMK SR  FSE+ ++F  MPFT RA E EK+AR+G+VEC  HELLQP+ VL+EK G++VA  KFTVLLMPNG  RITS   +    +S   + D E+KA L
Sbjct:  154 LRLVKPGNQNTQVTEAWNKVAHSFNCTPIEGMLSHQLKQHVIDGEKTIIQNPTDQQKKDHEKAEFEVHEVYAVDVLVSSGEGKAKDAGQR-TTIYKRDPSKQYGLKMKTSRAFFSEVERRFDAMPFTLRAFEDEKKARMGVVECAKHELLQPFNVLYEKEGEFVAQFKFTVLLMPNGPMRITSGPFEPDLYKSEMEVQDAELKALL 358          
BLAST of CV884694 vs. ExPASy Swiss-Prot
Match: PRLA_DICDI (Proliferation-associated protein A OS=Dictyostelium discoideum GN=prlA PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.606e-42
Identity = 87/204 (42.65%), Postives = 134/204 (65.69%), Query Frame = -1
Query:  235 LRLVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSHQLKQFVIDGNKVVLSVSNPDTRVDDAEFEENEVYAVDIVTSTGDGKPKLLDEKQTTIYKRAVDKNYHLKMKASRFIFSEINQKFPIMPFTARALEEKRARLGLVECVNHELLQPYPVLHEKPGDYVAHIKFTVLLMPNGSDRI--TSHALQEIQSTKTIDDPEIKAWLA 840
            LR++RPGK + +VT+ I+K++  +    V G+LSH+LK+F+IDG KV+ S + P  ++   EF+ENEVY +DIV STG+GK +  +  + TIY+R +D  Y LK KASR    +I +++  +PF  R  +EK ++LGLVE V H++L  YPVL ++ G  V   K TVL++PNG+ ++  T   L  ++S  ++ D  IKA +A
Sbjct:  160 LRMIRPGKTSNEVTQVIEKISDMYGVTSVSGILSHELKRFIIDGEKVIFSKNEPSQKIQTYEFQENEVYCIDIVMSTGEGKAR-EEADRPTIYRRNLDSTYKLKSKASRDFKDQIVKRYSALPFPLRNFDEKVSKLGLVELVEHQVLAAYPVLFDRSGCEVVQFKTTVLVLPNGNHKLIGTEFPLPFVRSEFSVTDDAIKALIA 362          
BLAST of CV884694 vs. ExPASy Swiss-Prot
Match: CDB4_SCHPO (Curved DNA-binding protein OS=Schizosaccharomyces pombe GN=cdb4 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.771e-32
Identity = 84/205 (40.98%), Postives = 121/205 (59.02%), Query Frame = -1
Query:  238 RLVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSHQLKQFVIDGNK-VVLSVSNPD-TRVDDAEFEENEVYAVDIVTSTGDGKPKLLDEKQTTIYKRAVDKNYHLKMKASRFIFSEINQKFPIMPFTARALE-EKRARLGLVECVNHELLQPYPVLHEKPGDYVAHIKFTVLLMPNGSDRITSHALQE--IQSTKTIDDPEIKAWL 837
            R ++PG  N  VT+ + K+A ++ CK V G+LSHQ ++ VIDG K V+L+ S+   + +D   FEE EVY VDI+ ST         +  T IYK+  D  Y LK++ASR ++SEI  KF   PF+ R +  + R  +GL EC +H+LL PY VL +K G  VA    T+ L   G+  ++    +E  I+S K ++DPEI A L
Sbjct:  157 RTIKPGNTNWQVTDIVDKIATSYGCKPVAGMLSHQQEREVIDGKKQVILNPSDSQRSEMDTFTFEEGEVYGVDILVSTSPSGKVKRSDIATRIYKK-TDTTYMLKLQASRKVYSEIQTKFGPFPFSTRNISFDSRTNMGLNECTSHKLLFPYEVLLDKDGGIVAEFYSTIALTKKGTIILSDSEPKEDFIKSDKKVEDPEIVALL 360          
The following BLAST results are available for this feature:
BLAST of CV884694 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PA2G4_MOUSE4.250e-5153.88Proliferation-associated protein 2G4 OS=Mus muscul... [more]
PA2G4_HUMAN4.250e-5153.88Proliferation-associated protein 2G4 OS=Homo sapie... [more]
PRLA_DICDI3.606e-4242.65Proliferation-associated protein A OS=Dictyosteliu... [more]
CDB4_SCHPO5.771e-3240.98Curved DNA-binding protein OS=Schizosaccharomyces ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010A06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T7_A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884694 ID=CV884694; Name=CV884694; organism=Citrus sinensis; type=EST; length=888bp
TTTTTTTTTAGATCATTGTCTAACACTATATTAAACTGTAACCAACCAGA
TACAAGTGAACAAAGCATCAAAATTGGGGGAAAGAAAGGAAAATAAATAA
GTAAACACTCATTCTTGAGTTGCAGCTCCATTTGTTGCATCCATGGGCTC
AGCTTCCGTTGATTCCTCAGCTTTGTCGCCCTTCTTACCTTTCTTCTTCT
TTCCACCACCTTTCTTCTTAGTCTTGATGCCCAAGGCTAACCAGGCCTTA
ATTTCAGGATCATCGATTGTCTTGGTGGACTGAATCTCCTGCAGAGCATG
AGATGTGATTCGATCTGACCCATTCGGCATCAGTAAAACTGTGAATTTGA
TATGAGCAACATAATCACCAGGCTTCTCGTGAAGAACAGGATATGGCTGC
AGAAGCTCATGATTCACACATTCCACTAATCCTAGCCTAGCCCTTTTTTC
TTCCAAAGCCCTTGCAGTGAAAGGCATGATTGGAAATTTCTGATTAATTT
CACTAAAGATAAATCTAGAAGCTTTCATTTTTAAGTGATAGTTTTTGTCC
ACGGCTCTCTTGTAAATAGTCGTCTGCTTCTCATCCAACAGCTTTGGCTT
TCCATCACCTGTGCTTGTAACTATATCTACAGCATAAACTTCGTTCTCCT
CAAATTCTGCATCATCAACTCTGGTATCTGGATTGGAGACACTCAGTACA
ACTTTGTTTCCATCAATCACAAACTGCTTCAGCTGGTGGCTGAGAACACC
TTCAACAATCTTGCAATCATGTGCAGCAGCTACCTTCTGAATGGCTTCTG
TTACATCTTTGTTCTTCTTTCCTGGCCTTACAAGCCTCAAGGCAACCTCA
GCAGCAGTATTTGCTGCAGCAATAACATCAGCTGCCCT
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