CX673654

Overview
NameCX673654
Unique NameCX673654
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length813
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX673654 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 2.892e-72
Identity = 127/132 (96.21%), Postives = 131/132 (99.24%), Query Frame = -2 
Query:  417 PAGISGALQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWTAD 812
            PAGISGA QDNNIMLWNAVIFGPDDTPWDGGTFKL+LQF+EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR+FSENKREYNRRVRE+VEQSWTAD
Sbjct:   21 PAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREVVEQSWTAD 152
[Close]
BLAST of CX673654 vs. ExPASy Swiss-Prot
Match: UBC2_ARATH (Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 1.099e-71
Identity = 126/132 (95.45%), Postives = 131/132 (99.24%), Query Frame = -2 
Query:  417 PAGISGALQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWTAD 812
            PAGISGA QDNNIMLWNAVIFGPDDTPWDGGTFKL+LQF+EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR+FSE+KREYNRRVRE+VEQSWTAD
Sbjct:   21 PAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSESKREYNRRVREVVEQSWTAD 152
[Close]
BLAST of CX673654 vs. ExPASy Swiss-Prot
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 3.198e-71
Identity = 125/132 (94.70%), Postives = 129/132 (97.73%), Query Frame = -2 
Query:  417 PAGISGALQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWTAD 812
            PAGISGA  DNNI LWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR++SENKREYNR+VRE+VEQSWTAD
Sbjct:   21 PAGISGAPHDNNITLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSENKREYNRKVREVVEQSWTAD 152
[Close]
BLAST of CX673654 vs. ExPASy Swiss-Prot
Match: UBC1_ARATH (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 5.454e-71
Identity = 124/132 (93.94%), Postives = 131/132 (99.24%), Query Frame = -2 
Query:  417 PAGISGALQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWTAD 812
            PAGISGA QDNNIMLWNAVIFGPDDTPWDGGTFKL+LQF+EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR++SE+KREYNRRVR++VEQSWTAD
Sbjct:   21 PAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWTAD 152
[Close]
BLAST of CX673654 vs. ExPASy Swiss-Prot
Match: UBC3_ARATH (Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana GN=UBC3 PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 4.472e-65
Identity = 116/129 (89.92%), Postives = 123/129 (95.35%), Query Frame = -2 
Query:  426 PAGISGALQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSW 812
            P GISGA QDNNIM WNA+IFGP+DTPWDGGTFKLTL FTEDYPNKPP VRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAA+LTSIQSLLCDPNP+SPAN+EAARLFSENKREYNR+V EIVEQS+
Sbjct:   21 PVGISGAPQDNNIMHWNALIFGPEDTPWDGGTFKLTLHFTEDYPNKPPIVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAVLTSIQSLLCDPNPDSPANAEAARLFSENKREYNRKVIEIVEQSY 149
[Close]
BLAST of CX673654 vs. ExPASy Swiss-Prot
Match: UBC2_DICDI (Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium discoideum GN=ubc2 PE=3 SV=2)

HSP 1 Score: 233.802 bits (595), Expect = 8.728e-61
Identity = 105/131 (80.15%), Postives = 123/131 (93.89%), Query Frame = -2 
Query:  420 PAGISGALQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWTA 812
            PAGISGA  +NNI++W AVIFGPDD+ W+G TFKL+LQF+E+YPN  PTV+F+S+MFHPN+YADGSICLDILQNQWSPIYD+AAILTSIQSLLCDPNPNSPANSE+ARLF ENKREYNR+V+EIVEQSW++
Sbjct:   21 PAGISGAPLENNILMWQAVIFGPDDSIWEGATFKLSLQFSEEYPNDAPTVKFLSKMFHPNVYADGSICLDILQNQWSPIYDIAAILTSIQSLLCDPNPNSPANSESARLFRENKREYNRKVKEIVEQSWSS 151
[Close]
BLAST of CX673654 vs. ExPASy Swiss-Prot
Match: UBE2A_MOUSE (Ubiquitin-conjugating enzyme E2 A OS=Mus musculus GN=Ube2a PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.012e-57
Identity = 100/129 (77.52%), Postives = 119/129 (92.25%), Query Frame = -2 
Query:  426 PAGISGALQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSW 812
            PAG+SGA  +NNIM+WNAVIFGP+ TP++ GTFKLT++FTE+YPNKPPTVRFVS+MFHPN+YADGSICLDILQN+WSP YDV++ILTSIQSLL +PNPNSPANS+AA+L+ ENKREY +RV  IVEQSW
Sbjct:   21 PAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSW 149
[Close]
BLAST of CX673654 vs. ExPASy Swiss-Prot
Match: UBE2A_HUMAN (Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens GN=UBE2A PE=2 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 2.012e-57
Identity = 100/129 (77.52%), Postives = 119/129 (92.25%), Query Frame = -2 
Query:  426 PAGISGALQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSW 812
            PAG+SGA  +NNIM+WNAVIFGP+ TP++ GTFKLT++FTE+YPNKPPTVRFVS+MFHPN+YADGSICLDILQN+WSP YDV++ILTSIQSLL +PNPNSPANS+AA+L+ ENKREY +RV  IVEQSW
Sbjct:   21 PAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSW 149
[Close]
BLAST of CX673654 vs. ExPASy Swiss-Prot
Match: UBCD6_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=UbcD6 PE=2 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 6.473e-56
Identity = 98/129 (75.97%), Postives = 116/129 (89.92%), Query Frame = -2 
Query:  426 PAGISGALQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSW 812
            P G+SGA  DNNIM+WNAVIFGP DTP++ GTFKLT++FTE+YPNKPPTVRFVS++FHPN+YADG ICLDILQN+WSP YDV+AILTSIQSLL DPNPNSPANS AA+L+ EN+REY +RV+  VEQS+
Sbjct:   21 PTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKVFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPANSTAAQLYKENRREYEKRVKACVEQSF 149
[Close]
BLAST of CX673654 vs. ExPASy Swiss-Prot
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.212e-55
Identity = 96/129 (74.42%), Postives = 116/129 (89.92%), Query Frame = -2 
Query:  426 PAGISGALQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSW 812
            P G+SGA  +NNIM WNAVIFGP+ TP++ GTFKL ++F+E+YPNKPPTVRF+S+MFHPN+YADGSICLDILQN+WSP YDV++ILTSIQSLL +PNPNSPANS+AA+L+ ENKREY +RV  IVEQSW
Sbjct:   21 PVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSW 149
The following BLAST results are available for this feature:
BLAST of CX673654 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
UBC2_MEDSA2.892e-7296.21Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati... [more]
UBC2_ARATH1.099e-7195.45Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis t... [more]
UBC2_WHEAT3.198e-7194.70Ubiquitin-conjugating enzyme E2 2 OS=Triticum aest... [more]
UBC1_ARATH5.454e-7193.94Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis t... [more]
UBC3_ARATH4.472e-6589.92Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis t... [more]
UBC2_DICDI8.728e-6180.15Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium... [more]
UBE2A_MOUSE2.012e-5777.52Ubiquitin-conjugating enzyme E2 A OS=Mus musculus ... [more]
UBE2A_HUMAN2.012e-5777.52Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens ... [more]
UBCD6_DROME6.473e-5675.97Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBE2B_RAT3.212e-5574.42Ubiquitin-conjugating enzyme E2 B OS=Rattus norveg... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_24A06_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-24A06-A12-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX673654 ID=CX673654; Name=CX673654; organism=Citrus sinensis; type=EST; length=813bp
TTTTTTTTTTTTTTTTGACAGAATATAGCAATCACCATAAAAATACAATG
CAAGATGGCCGTTCACAACATCCAAAAATCCGACTAAATAATTCCAATGA
AAAAGAGCTCCTCTGAGGTTGTCTTAAGACATACATCACTGATTCACTGC
AGCAATAATACCCCTATACAAATGCTACAGATAAATTACAGTTACATGAA
AGATGTTGAAAAGAAGATGGAAATGTTGAGAAATTAACAAGAGGTTCAAC
CAGAGCTATCTGGGAGGAAGAATCCGAAGAGATTCTCTAATAACAATGCA
CCTGAAATCAGATTGATTACGGCGTACACTACTATTGAACAAACCAGCCA
CACCAGCCCCAGTTTTCATCTTTTATTTCTACAGCATAACCGGCCGGTGC
TTTCATTGGACTTTTAGTCGGCTGTCCAGCTTTGCTCCACTATTTCACGC
ACTCTTCGGTTGTACTCTCGTTTATTCTCACTAAACAGCCGAGCTGCTTC
AGAATTTGCAGGGGAGTTTGGATTTGGATCACAAAGCAGCGACTGGATGG
AGGTCAGTATAGCTGCAACATCATATATAGGACTCCACTGATTTTGTAAT
ATATCCAGGCAGATACTTCCATCCGCATAGATATTTGGATGAAACATCCG
TGAAACGAACCGAACTGTTGGAGGTTTATTCGGATAATCCTCTGTAAACT
GAAGAGTCAACTTGAACGTACCTCCGTCCCAGGGAGTATCATCAGGCCCA
AAAATAACGGCGTTCCATAACATGATGTTGTTGTCTTGAAGGGCCCCGCT
GATTCCGGCGGGT
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