CV884539
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CV884539 vs. ExPASy Swiss-Prot
Match: SMBP2_HUMAN (DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=2) HSP 1 Score: 103.219 bits (256), Expect = 2.265e-21 Identity = 92/276 (33.33%), Postives = 140/276 (50.72%), Query Frame = 3 Query: 30 TGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGA-CATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQ 842 TGL G LV F R LP + + GD+V + + G+ AT + +++VA + H D S S R+ + LA+ +TY R +AL+ L+K + P+ + + LFG + SE+ D SQK+A++ L++K L II GPPGTGKT + EII +AV+QG +VL AP+N AVDN+VE+L+ I+R+G+PAR+ ++ SL ++ +S A VA D+RKD+ Q Sbjct: 57 TGLYGRLLVTFEPRRYGSAAALPSNSFTSGDIVGLYDAANEGSQLATGILTRVTQK------SVTVAFDESH-DFQLSLDRENSYRLLK---LANDVTYRRLKKALIALKK---YHSGPASSLIEVLFGRSAP---------SPASEIHPLTFFNTCLDTSQKEAVSFALSQKE-LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILRLGHPARLLESIQQHSLDAVLARSDSAQIVA-------DIRKDIDQ 302
BLAST of CV884539 vs. ExPASy Swiss-Prot
Match: HCS1_SCHPO (DNA polymerase alpha-associated DNA helicase A OS=Schizosaccharomyces pombe GN=hcs1 PE=2 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 2.265e-21 Identity = 90/305 (29.51%), Postives = 147/305 (48.20%), Query Frame = 3 Query: 24 VSTGLGGMHLVLFRVE----GNHRLPPTTLSPGDMVCVRVC-----DSRGACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSL---------GEIVK----------SKLASFVAEFERKKSDLRKDLRQCLKD 854 V TG GG ++ F + LP + SPGD+V +R R ++G V + E ISVAL+S P+ SV + L + +TYER ++ +++ RN + TL G K+ +++ + D K + SQKKA+ + K L +I GPPGTGKT L EII + V + +R+LV +N AVDN+V++LS G+ +VR+G+PAR+ P++ SL G++++ SK+ + R++ ++ K++R+ KD Sbjct: 64 VKTGFGGKTIIDFEKDPAFSNGEELPANSFSPGDVVSIRQDFQSSKKKRPNETDISVEGVVTRVHERH--ISVALKSEEDIPS-------SVTRLSVVKLVNRVTYERMRHTMLEFKRSIPEYRN---SLFYTLIGRKKADVSIDQKLIGDIK------YFNKELNASQKKAVKFSIAVKE-LSLIHGPPGTGKTHTLVEIIQQLVLRNKRILVCGASNLAVDNIVDRLSSSGIPMVRLGHPARLLPSILDHSLDVLSRTGDNGDVIRGISEDIDVCLSKITK--TKNGRERREIYKNIRELRKD 347
BLAST of CV884539 vs. ExPASy Swiss-Prot
Match: SMBP2_MOUSE (DNA-binding protein SMUBP-2 OS=Mus musculus GN=Ighmbp2 PE=1 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 5.046e-21 Identity = 89/275 (32.36%), Postives = 137/275 (49.82%), Query Frame = 3 Query: 30 TGLGGMHLVLFRVEGNHR---LPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQ 842 TGL G LV F LP + + GD+V + + AT + +++VA + H +L R+ LA+ +TY+R +ALM L+K + P+ + + L G +E L+ ++ T D SQK+A++ L +K L II GPPGTGKT + EII +AV+QG +VL AP+N AVDN+VE+L+ I+R+G+PAR+ +V SL ++ +S A VA D+R+D+ Q Sbjct: 57 TGLYGQRLVTFEPRKFGPAVVLPSNSFTSGDIVGLYDTNENSQLATGVLTRITQK------SVTVAFDESHD----LQLNLDRENTYRLLKLANDVTYKRLKKALMTLKK---YHSGPASSLIDILLGSSTPSPAMEIPPLSFYNT---------TLDLSQKEAVSFALAQKE-LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKKRILRLGHPARLLESVQHHSLDAVLARSDNAQIVA-------DIRRDIDQ 301
BLAST of CV884539 vs. ExPASy Swiss-Prot
Match: SMBP2_MESAU (DNA-binding protein SMUBP-2 OS=Mesocricetus auratus GN=IGHMBP2 PE=1 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 2.504e-20 Identity = 85/275 (30.91%), Postives = 135/275 (49.09%), Query Frame = 3 Query: 30 TGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQ 842 TGL G LV F ++ LP + + GD+V + + AT + +++VA + H +L R+ LA+ +TY+R +ALM L+K + P+ + + L G + +E+ D SQK+A++ L +K + II GPPGTGKT + EII +AV+QG ++L AP+N AVDN+VE+L+ I+R+G+PAR+ + SL ++ +S A VA D+RKD+ Q Sbjct: 57 TGLYGQRLVTFEPRKLGPVVVLPSNSFTSGDIVGLYDANESSQLATGVLTRITQK------SVTVAFDESHD----FQLNLDRENTYRLLKLANDVTYKRLKKALMTLKK---YHSGPASSLIDVLLGGSSP---------SPTTEIPPFTFYNTALDPSQKEAVSFALAQKE-VAIIHGPPGTGKTTTVVEIILQAVKQGLKILCCAPSNVAVDNLVERLALCKKRILRLGHPARLLESAQQHSLDAVLARSDNAQIVA-------DIRKDIDQ 301
BLAST of CV884539 vs. ExPASy Swiss-Prot
Match: SMBP2_RAT (DNA-binding protein SMUBP-2 OS=Rattus norvegicus GN=Ighmbp2 PE=1 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 7.286e-20 Identity = 87/275 (31.64%), Postives = 134/275 (48.73%), Query Frame = 3 Query: 30 TGLGGMHLVLFRVEGNHR---LPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQ 842 TGL G LV F LP + + GD+V + + AT + ++ VA + H +L R+ LA+ +TY+R +AL+ L+K + P+ + + L G E L ++ T D SQK+A++ L +K + II GPPGTGKT + EII +AV+QG +VL AP+N AVDN+VE+L+ I+R+G+PAR+ +V SL ++ +S A VA D+R+D+ Q Sbjct: 57 TGLYGQRLVTFEPRKFGPAVVLPSNSFTSGDIVGLYDTNESSQLATGVLTRITQK------SVIVAFDESHD----FQLNLDRENTYRLLKLANDVTYKRLKKALLTLKK---YHSGPASSLIDVLLGGSTPSPATEIPPLTFYNT---------TLDPSQKEAVSFALAQKE-VAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKKQILRLGHPARLLESVQQHSLDAVLARSDNAQIVA-------DIRRDIDQ 301 The following BLAST results are available for this feature:
BLAST of CV884539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CV884539 ID=CV884539; Name=CV884539; organism=Citrus sinensis; type=EST; length=951bpback to top |