CV884539

Overview
NameCV884539
Unique NameCV884539
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length951
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12582 contig Csv1_Contig12582:238..1188. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884539 vs. ExPASy Swiss-Prot
Match: SMBP2_HUMAN (DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 2.265e-21
Identity = 92/276 (33.33%), Postives = 140/276 (50.72%), Query Frame = 3
Query:   30 TGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGA-CATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQ 842
            TGL G  LV F   R      LP  + + GD+V +    + G+  AT  +            +++VA +  H D   S     S R+ +   LA+ +TY R  +AL+ L+K   +   P+ + +  LFG             +  SE+          D SQK+A++  L++K  L II GPPGTGKT  + EII +AV+QG +VL  AP+N AVDN+VE+L+     I+R+G+PAR+  ++   SL  ++ +S  A  VA       D+RKD+ Q
Sbjct:   57 TGLYGRLLVTFEPRRYGSAAALPSNSFTSGDIVGLYDAANEGSQLATGILTRVTQK------SVTVAFDESH-DFQLSLDRENSYRLLK---LANDVTYRRLKKALIALKK---YHSGPASSLIEVLFGRSAP---------SPASEIHPLTFFNTCLDTSQKEAVSFALSQKE-LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILRLGHPARLLESIQQHSLDAVLARSDSAQIVA-------DIRKDIDQ 302          
BLAST of CV884539 vs. ExPASy Swiss-Prot
Match: HCS1_SCHPO (DNA polymerase alpha-associated DNA helicase A OS=Schizosaccharomyces pombe GN=hcs1 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.265e-21
Identity = 90/305 (29.51%), Postives = 147/305 (48.20%), Query Frame = 3
Query:   24 VSTGLGGMHLVLFRVE----GNHRLPPTTLSPGDMVCVRVC-----DSRGACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSL---------GEIVK----------SKLASFVAEFERKKSDLRKDLRQCLKD 854
            V TG GG  ++ F  +        LP  + SPGD+V +R         R       ++G V  + E    ISVAL+S    P+       SV    +  L + +TYER    ++  +++    RN   +   TL G K+    +++  + D           K  + SQKKA+   +  K  L +I GPPGTGKT  L EII + V + +R+LV   +N AVDN+V++LS  G+ +VR+G+PAR+ P++   SL         G++++          SK+     +  R++ ++ K++R+  KD
Sbjct:   64 VKTGFGGKTIIDFEKDPAFSNGEELPANSFSPGDVVSIRQDFQSSKKKRPNETDISVEGVVTRVHERH--ISVALKSEEDIPS-------SVTRLSVVKLVNRVTYERMRHTMLEFKRSIPEYRN---SLFYTLIGRKKADVSIDQKLIGDIK------YFNKELNASQKKAVKFSIAVKE-LSLIHGPPGTGKTHTLVEIIQQLVLRNKRILVCGASNLAVDNIVDRLSSSGIPMVRLGHPARLLPSILDHSLDVLSRTGDNGDVIRGISEDIDVCLSKITK--TKNGRERREIYKNIRELRKD 347          
BLAST of CV884539 vs. ExPASy Swiss-Prot
Match: SMBP2_MOUSE (DNA-binding protein SMUBP-2 OS=Mus musculus GN=Ighmbp2 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 5.046e-21
Identity = 89/275 (32.36%), Postives = 137/275 (49.82%), Query Frame = 3
Query:   30 TGLGGMHLVLFRVEGNHR---LPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQ 842
            TGL G  LV F          LP  + + GD+V +   +     AT  +            +++VA +  H      +L        R+  LA+ +TY+R  +ALM L+K   +   P+ + +  L G       +E   L+ ++          T D SQK+A++  L +K  L II GPPGTGKT  + EII +AV+QG +VL  AP+N AVDN+VE+L+     I+R+G+PAR+  +V   SL  ++ +S  A  VA       D+R+D+ Q
Sbjct:   57 TGLYGQRLVTFEPRKFGPAVVLPSNSFTSGDIVGLYDTNENSQLATGVLTRITQK------SVTVAFDESHD----LQLNLDRENTYRLLKLANDVTYKRLKKALMTLKK---YHSGPASSLIDILLGSSTPSPAMEIPPLSFYNT---------TLDLSQKEAVSFALAQKE-LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKKRILRLGHPARLLESVQHHSLDAVLARSDNAQIVA-------DIRRDIDQ 301          
BLAST of CV884539 vs. ExPASy Swiss-Prot
Match: SMBP2_MESAU (DNA-binding protein SMUBP-2 OS=Mesocricetus auratus GN=IGHMBP2 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.504e-20
Identity = 85/275 (30.91%), Postives = 135/275 (49.09%), Query Frame = 3
Query:   30 TGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQ 842
            TGL G  LV F   ++     LP  + + GD+V +   +     AT  +            +++VA +  H      +L        R+  LA+ +TY+R  +ALM L+K   +   P+ + +  L G             +  +E+          D SQK+A++  L +K  + II GPPGTGKT  + EII +AV+QG ++L  AP+N AVDN+VE+L+     I+R+G+PAR+  +    SL  ++ +S  A  VA       D+RKD+ Q
Sbjct:   57 TGLYGQRLVTFEPRKLGPVVVLPSNSFTSGDIVGLYDANESSQLATGVLTRITQK------SVTVAFDESHD----FQLNLDRENTYRLLKLANDVTYKRLKKALMTLKK---YHSGPASSLIDVLLGGSSP---------SPTTEIPPFTFYNTALDPSQKEAVSFALAQKE-VAIIHGPPGTGKTTTVVEIILQAVKQGLKILCCAPSNVAVDNLVERLALCKKRILRLGHPARLLESAQQHSLDAVLARSDNAQIVA-------DIRKDIDQ 301          
BLAST of CV884539 vs. ExPASy Swiss-Prot
Match: SMBP2_RAT (DNA-binding protein SMUBP-2 OS=Rattus norvegicus GN=Ighmbp2 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 7.286e-20
Identity = 87/275 (31.64%), Postives = 134/275 (48.73%), Query Frame = 3
Query:   30 TGLGGMHLVLFRVEGNHR---LPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQ 842
            TGL G  LV F          LP  + + GD+V +   +     AT  +            ++ VA +  H      +L        R+  LA+ +TY+R  +AL+ L+K   +   P+ + +  L G        E   L  ++          T D SQK+A++  L +K  + II GPPGTGKT  + EII +AV+QG +VL  AP+N AVDN+VE+L+     I+R+G+PAR+  +V   SL  ++ +S  A  VA       D+R+D+ Q
Sbjct:   57 TGLYGQRLVTFEPRKFGPAVVLPSNSFTSGDIVGLYDTNESSQLATGVLTRITQK------SVIVAFDESHD----FQLNLDRENTYRLLKLANDVTYKRLKKALLTLKK---YHSGPASSLIDVLLGGSTPSPATEIPPLTFYNT---------TLDPSQKEAVSFALAQKE-VAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKKQILRLGHPARLLESVQQHSLDAVLARSDNAQIVA-------DIRRDIDQ 301          
The following BLAST results are available for this feature:
BLAST of CV884539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SMBP2_HUMAN2.265e-2133.33DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGH... [more]
HCS1_SCHPO2.265e-2129.51DNA polymerase alpha-associated DNA helicase A OS=... [more]
SMBP2_MOUSE5.046e-2132.36DNA-binding protein SMUBP-2 OS=Mus musculus GN=Igh... [more]
SMBP2_MESAU2.504e-2030.91DNA-binding protein SMUBP-2 OS=Mesocricetus auratu... [more]
SMBP2_RAT7.286e-2031.64DNA-binding protein SMUBP-2 OS=Rattus norvegicus G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008B02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884539 ID=CV884539; Name=CV884539; organism=Citrus sinensis; type=EST; length=951bp
TTAGTATATATTGGGATTGGGATGTGTCCACAGGACTAGGAGGAATGCAT
TTGGTATTGTTTAGGGTTGAAGGAAATCATCGACTGCCACCTACAACCCT
TTCTCCTGGAGACATGGTTTGTGTCAGGGTTTGCGACAGTAGGGGTGCAT
GTGCTACTTCTTGCATACAGGGGTTTGTTCACAATCTTGGGGAGGATGGT
TGCACCATCAGTGTGGCTCTGGAATCTCGCCATGGCGATCCCACATTCTC
TAAGCTCTTTGGCAAGAGTGTGCGCATTGACCGTATCCAAGGATTGGCGG
ACACTCTAACTTATGAGCGCAATTGTGAGGCATTGATGCTCCTTCAAAAG
AATGGTTTGCACAAGAGAAATCCTTCTATTGCTGCAGTAGTTACATTATT
TGGAGACAAGGAAGATGTTACATGGCTTGAAGAGAATGATTTAGCAGATT
GGTCTGAAGTGAAATTGGATGGAATAATGGGGAAAACTTTTGATGACTCG
CAGAAAAAGGCTATTGCCTTGGGTTTAAATAAGAAGCGGCCACTGCTGAT
AATCCAAGGACCTCCTGGTACCGGTAAGACAGGTTTGCTTAAGGAAATTA
TAGCTCGTGCTGTCCAACAAGGTGAAAGGGTACTAGTAACAGCGCCTACA
AATGCAGCTGTTGACAACATGGTTGAAAAACTTTCAGACGTTGGATTAAA
TATTGTGCGGGTTGGAAACCCAGCACGCATATCTCCAGCTGTAGCATCAA
AGTCTTTGGGTGAAATTGTCAAGTCAAAGCTTGCAAGTTTTGTGGCTGAG
TTTGAAAGGAAGAAGTCAGATCTTAGAAAAGATCTGAGACAGTGTTTGAA
GGATGATTCATTAGCTGCTGGCATACGTCAACTTTTAAAACAGCTTGGAA
AGACACTGAAGAAGAAGGAGAAAGAGACTGTGAAGGAAGTTCTATCAAGT
G
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