CV884437 | Citrus Genome Database

Overview


Name	CV884437
Unique Name	CV884437
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	170

Libraries


Library Name	Type
Ruby Orange Developing Flower cDNA Library UCRCS04-UCR	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig11121	contig	Csv1_Contig11121:396..565.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A_WHEAT (Elongation factor 1-alpha OS=Triticum aestivum GN=TEF1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.269e-26
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1

Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 168
            GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP
Sbjct:  105 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 160

[Close]

BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A_VICFA (Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.269e-26
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1

Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 168
            GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP
Sbjct:  105 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 160

[Close]

BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A_TOBAC (Elongation factor 1-alpha OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.269e-26
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1

Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 168
            GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP
Sbjct:  105 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 160

[Close]

BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A_SOLLC (Elongation factor 1-alpha OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.269e-26
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1

Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 168
            GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP
Sbjct:  105 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 160

[Close]

BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A_PEA (Elongation factor 1-alpha OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.269e-26
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1

Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 168
            GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP
Sbjct:  105 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 160

[Close]

BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A_ORYSJ (Elongation factor 1-alpha OS=Oryza sativa subsp. japonica GN=REFA1 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 1.269e-26
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1

Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 168
            GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP
Sbjct:  105 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 160

[Close]

BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A_MANES (Elongation factor 1-alpha OS=Manihot esculenta GN=EF1 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.269e-26
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1

Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 168
            GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP
Sbjct:  105 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 160

[Close]

BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A_MAIZE (Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.269e-26
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1

Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 168
            GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP
Sbjct:  105 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 160

[Close]

BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A_ARATH (Elongation factor 1-alpha OS=Arabidopsis thaliana GN=A1 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.269e-26
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1

Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 168
            GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP
Sbjct:  105 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 160

[Close]

BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A2_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.269e-26
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1

Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 168
            GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP
Sbjct:  105 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 160

The following BLAST results are available for this feature:

BLAST of CV884437 vs. ExPASy Swiss-Prot

BLAST of CV884437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110


Match Name	E-value	Identity	Description
EF1A_WHEAT	1.269e-26	100.00	Elongation factor 1-alpha OS=Triticum aestivum GN=...	[more]
EF1A_VICFA	1.269e-26	100.00	Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1	[more]
EF1A_TOBAC	1.269e-26	100.00	Elongation factor 1-alpha OS=Nicotiana tabacum PE=...	[more]
EF1A_SOLLC	1.269e-26	100.00	Elongation factor 1-alpha OS=Solanum lycopersicum ...	[more]
EF1A_PEA	1.269e-26	100.00	Elongation factor 1-alpha OS=Pisum sativum PE=2 SV...	[more]
EF1A_ORYSJ	1.269e-26	100.00	Elongation factor 1-alpha OS=Oryza sativa subsp. j...	[more]
EF1A_MANES	1.269e-26	100.00	Elongation factor 1-alpha OS=Manihot esculenta GN=...	[more]
EF1A_MAIZE	1.269e-26	100.00	Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3...	[more]
EF1A_ARATH	1.269e-26	100.00	Elongation factor 1-alpha OS=Arabidopsis thaliana ...	[more]
EF1A2_DAUCA	1.269e-26	100.00	Elongation factor 1-alpha OS=Daucus carota PE=2 SV...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS04_2_003D11_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T3_D11, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CV884437 ID=CV884437; Name=CV884437; organism=Citrus sinensis; type=EST; length=170bp
GGTACCTCACAGGCTGACTGTGCCGTCCTCATCATTGACTCCACCACCGG
TGGTTTTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTT
TGCTTGCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAG
ATGGACGCCACCACCCCATC