CV884435
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CV884435 vs. ExPASy Swiss-Prot
Match: GAR2_SCHPO (Protein gar2 OS=Schizosaccharomyces pombe GN=gar2 PE=1 SV=2) HSP 1 Score: 82.0333 bits (201), Expect = 4.327e-15 Identity = 52/160 (32.50%), Postives = 78/160 (48.75%), Query Frame = -2 Query: 333 FSEVAEVVDVRLSSDAD-GRFKGYGHVEFASVEDAHKAIELNG-QMLGNRAIRLDFARERGA----YTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGG 794 F E +V R+ D GR KGYG+V+F + E A A+ NG + + R + LD + R A Y GN + + + T+F+ + ED + + FG CG+I I +P D +G +KG Y+ F+D DS K +EM+G I G Sbjct: 283 FEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLS-----EPSDTVFVGNLSFNATEDDLSTA----FGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFIAG 433
BLAST of CV884435 vs. ExPASy Swiss-Prot
Match: RBM23_HUMAN (Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.477e-12 Identity = 53/166 (31.93%), Postives = 84/166 (50.60%), Query Frame = -2 Query: 333 VEQADVQNFFSEVAEVVDVRLSSDADGR-FKGYGHVEFASVEDAHKAIELNGQ-MLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGG 821 + D+++FFS V +V DVR+ SD + R KG +VEF ++ AI L GQ +LG I E+ + N+ QKG G +++ ++ ED +R E G+I I + KD DTG KG ++ F+D++ +ALE ++G E+ G Sbjct: 177 IRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMA-----NNLQKGNGGPMR--LYVGSLHFNITEDMLRGIFEPF----GKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAG 331
BLAST of CV884435 vs. ExPASy Swiss-Prot
Match: NUCL_CHICK (Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.477e-12 Identity = 50/160 (31.25%), Postives = 77/160 (48.12%), Query Frame = -2 Query: 306 EVVDVRLSSDADGRFKGYGHVEFASVEDAHKAI-ELNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVDEAK 779 + +++ + GR KGY VEF + EDA +A+ N + RAIRL+F+ + N +GG Q + T+F++G E+ +R S E G I+ + D DTGS KG ++DF+ + A E M EI G + +D AK Sbjct: 483 KATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSS--------PSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFE------GSIS-ARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAK 627
BLAST of CV884435 vs. ExPASy Swiss-Prot
Match: RBM39_PONAB (RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.222e-11 Identity = 51/170 (30.00%), Postives = 80/170 (47.06%), Query Frame = -2 Query: 318 VEQADVQNFFSEVAEVVDVRLSSDADGR-FKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVV 821 + D++ FFS V +V DVR+ SD + R KG +VEF V AI L GQ R + + + +N+ QKG G +++ ++ ED +R E G I I + D +TG KG ++ F+D++ KALE ++G E+ G + V Sbjct: 164 IRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQ----RVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMR--LYVGSLHFNITEDMLRGIFEPF----GRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323
BLAST of CV884435 vs. ExPASy Swiss-Prot
Match: RBM39_HUMAN (RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 2.222e-11 Identity = 51/170 (30.00%), Postives = 80/170 (47.06%), Query Frame = -2 Query: 318 VEQADVQNFFSEVAEVVDVRLSSDADGR-FKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVV 821 + D++ FFS V +V DVR+ SD + R KG +VEF V AI L GQ R + + + +N+ QKG G +++ ++ ED +R E G I I + D +TG KG ++ F+D++ KALE ++G E+ G + V Sbjct: 164 IRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQ----RVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMR--LYVGSLHFNITEDMLRGIFEPF----GRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323
BLAST of CV884435 vs. ExPASy Swiss-Prot
Match: RBM39_MOUSE (RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.902e-11 Identity = 50/170 (29.41%), Postives = 80/170 (47.06%), Query Frame = -2 Query: 318 VEQADVQNFFSEVAEVVDVRLSSDADGR-FKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVV 821 + D++ FFS V +V DVR+ SD + R +G +VEF V AI L GQ R + + + +N+ QKG G +++ ++ ED +R E G I I + D +TG KG ++ F+D++ KALE ++G E+ G + V Sbjct: 164 IRPRDLEEFFSTVGKVRDVRMISDRNSRRSRGIAYVEFVDVSSVRLAIGLTGQ----RVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMR--LYVGSLHFNITEDMLRGIFEPF----GRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323
BLAST of CV884435 vs. ExPASy Swiss-Prot
Match: NUCL_PONAB (Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3) HSP 1 Score: 69.3218 bits (168), Expect = 2.902e-11 Identity = 49/156 (31.41%), Postives = 75/156 (48.08%), Query Frame = -2 Query: 306 VRLSSDADGRFKGYGHVEFASVEDAHKAI-ELNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVDEAK 767 +++ + +G+ KGY +EFAS EDA +A+ N + + RAIRL+ RG+ R Q + T+F+KG + ED +L+E F R + D +TGS KG ++DF + A E M EI G + +D AK Sbjct: 514 IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGS--------------PNARSQPSKTLFVKG----LSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 648
BLAST of CV884435 vs. ExPASy Swiss-Prot
Match: NUCL_MACFA (Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3) HSP 1 Score: 69.3218 bits (168), Expect = 2.902e-11 Identity = 49/156 (31.41%), Postives = 75/156 (48.08%), Query Frame = -2 Query: 306 VRLSSDADGRFKGYGHVEFASVEDAHKAI-ELNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVDEAK 767 +++ + +G+ KGY +EFAS EDA +A+ N + + RAIRL+ RG+ R Q + T+F+KG + ED +L+E F R + D +TGS KG ++DF + A E M EI G + +D AK Sbjct: 513 IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGS--------------PNARSQPSKTLFVKG----LSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 647
BLAST of CV884435 vs. ExPASy Swiss-Prot
Match: NUCL_HUMAN (Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3) HSP 1 Score: 69.3218 bits (168), Expect = 2.902e-11 Identity = 49/156 (31.41%), Postives = 75/156 (48.08%), Query Frame = -2 Query: 306 VRLSSDADGRFKGYGHVEFASVEDAHKAI-ELNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVDEAK 767 +++ + +G+ KGY +EFAS EDA +A+ N + + RAIRL+ RG+ R Q + T+F+KG + ED +L+E F R + D +TGS KG ++DF + A E M EI G + +D AK Sbjct: 512 IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGS--------------PNARSQPSKTLFVKG----LSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 646 The following BLAST results are available for this feature:
BLAST of CV884435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CV884435 ID=CV884435; Name=CV884435; organism=Citrus sinensis; type=EST; length=822bpback to top |