CV884435

Overview
NameCV884435
Unique NameCV884435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6542 contig Csv1_Contig6542:1225..2046. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884435 vs. ExPASy Swiss-Prot
Match: GAR2_SCHPO (Protein gar2 OS=Schizosaccharomyces pombe GN=gar2 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 4.327e-15
Identity = 52/160 (32.50%), Postives = 78/160 (48.75%), Query Frame = -2
Query:  333 FSEVAEVVDVRLSSDAD-GRFKGYGHVEFASVEDAHKAIELNG-QMLGNRAIRLDFARERGA----YTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGG 794
            F E   +V  R+  D   GR KGYG+V+F + E A  A+  NG + +  R + LD +  R A    Y     GN  +        + + T+F+     +  ED +  +    FG CG+I  I +P D  +G +KG  Y+ F+D DS  K +EM+G  I G
Sbjct:  283 FEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLS-----EPSDTVFVGNLSFNATEDDLSTA----FGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFIAG 433          
BLAST of CV884435 vs. ExPASy Swiss-Prot
Match: RBM23_HUMAN (Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.477e-12
Identity = 53/166 (31.93%), Postives = 84/166 (50.60%), Query Frame = -2
Query:  333 VEQADVQNFFSEVAEVVDVRLSSDADGR-FKGYGHVEFASVEDAHKAIELNGQ-MLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGG 821
            +   D+++FFS V +V DVR+ SD + R  KG  +VEF  ++    AI L GQ +LG   I      E+      +     N+ QKG  G     +++     ++ ED +R   E      G+I  I + KD DTG  KG  ++ F+D++   +ALE ++G E+ G
Sbjct:  177 IRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMA-----NNLQKGNGGPMR--LYVGSLHFNITEDMLRGIFEPF----GKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAG 331          
BLAST of CV884435 vs. ExPASy Swiss-Prot
Match: NUCL_CHICK (Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.477e-12
Identity = 50/160 (31.25%), Postives = 77/160 (48.12%), Query Frame = -2
Query:  306 EVVDVRLSSDADGRFKGYGHVEFASVEDAHKAI-ELNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVDEAK 779
            +   +++  +  GR KGY  VEF + EDA +A+   N   +  RAIRL+F+             + N   +GG  Q + T+F++G      E+ +R S E      G I+   +  D DTGS KG  ++DF+  +    A E M   EI G  + +D AK
Sbjct:  483 KATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSS--------PSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFE------GSIS-ARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAK 627          
BLAST of CV884435 vs. ExPASy Swiss-Prot
Match: RBM39_PONAB (RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.222e-11
Identity = 51/170 (30.00%), Postives = 80/170 (47.06%), Query Frame = -2
Query:  318 VEQADVQNFFSEVAEVVDVRLSSDADGR-FKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVV 821
            +   D++ FFS V +V DVR+ SD + R  KG  +VEF  V     AI L GQ    R + +    +            +N+ QKG  G     +++     ++ ED +R   E      G I  I +  D +TG  KG  ++ F+D++   KALE ++G E+ G  + V
Sbjct:  164 IRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQ----RVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMR--LYVGSLHFNITEDMLRGIFEPF----GRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323          
BLAST of CV884435 vs. ExPASy Swiss-Prot
Match: RBM39_HUMAN (RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.222e-11
Identity = 51/170 (30.00%), Postives = 80/170 (47.06%), Query Frame = -2
Query:  318 VEQADVQNFFSEVAEVVDVRLSSDADGR-FKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVV 821
            +   D++ FFS V +V DVR+ SD + R  KG  +VEF  V     AI L GQ    R + +    +            +N+ QKG  G     +++     ++ ED +R   E      G I  I +  D +TG  KG  ++ F+D++   KALE ++G E+ G  + V
Sbjct:  164 IRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQ----RVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMR--LYVGSLHFNITEDMLRGIFEPF----GRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323          
BLAST of CV884435 vs. ExPASy Swiss-Prot
Match: RBM39_MOUSE (RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.902e-11
Identity = 50/170 (29.41%), Postives = 80/170 (47.06%), Query Frame = -2
Query:  318 VEQADVQNFFSEVAEVVDVRLSSDADGR-FKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVV 821
            +   D++ FFS V +V DVR+ SD + R  +G  +VEF  V     AI L GQ    R + +    +            +N+ QKG  G     +++     ++ ED +R   E      G I  I +  D +TG  KG  ++ F+D++   KALE ++G E+ G  + V
Sbjct:  164 IRPRDLEEFFSTVGKVRDVRMISDRNSRRSRGIAYVEFVDVSSVRLAIGLTGQ----RVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMR--LYVGSLHFNITEDMLRGIFEPF----GRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323          
BLAST of CV884435 vs. ExPASy Swiss-Prot
Match: NUCL_PONAB (Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.902e-11
Identity = 49/156 (31.41%), Postives = 75/156 (48.08%), Query Frame = -2
Query:  306 VRLSSDADGRFKGYGHVEFASVEDAHKAI-ELNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVDEAK 767
            +++  + +G+ KGY  +EFAS EDA +A+   N + +  RAIRL+    RG+                 R Q + T+F+KG    + ED    +L+E F       R  +  D +TGS KG  ++DF   +    A E M   EI G  + +D AK
Sbjct:  514 IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGS--------------PNARSQPSKTLFVKG----LSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 648          
BLAST of CV884435 vs. ExPASy Swiss-Prot
Match: NUCL_MACFA (Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.902e-11
Identity = 49/156 (31.41%), Postives = 75/156 (48.08%), Query Frame = -2
Query:  306 VRLSSDADGRFKGYGHVEFASVEDAHKAI-ELNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVDEAK 767
            +++  + +G+ KGY  +EFAS EDA +A+   N + +  RAIRL+    RG+                 R Q + T+F+KG    + ED    +L+E F       R  +  D +TGS KG  ++DF   +    A E M   EI G  + +D AK
Sbjct:  513 IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGS--------------PNARSQPSKTLFVKG----LSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 647          
BLAST of CV884435 vs. ExPASy Swiss-Prot
Match: NUCL_HUMAN (Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.902e-11
Identity = 49/156 (31.41%), Postives = 75/156 (48.08%), Query Frame = -2
Query:  306 VRLSSDADGRFKGYGHVEFASVEDAHKAI-ELNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVDEAK 767
            +++  + +G+ KGY  +EFAS EDA +A+   N + +  RAIRL+    RG+                 R Q + T+F+KG    + ED    +L+E F       R  +  D +TGS KG  ++DF   +    A E M   EI G  + +D AK
Sbjct:  512 IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGS--------------PNARSQPSKTLFVKG----LSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 646          
The following BLAST results are available for this feature:
BLAST of CV884435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
GAR2_SCHPO4.327e-1532.50Protein gar2 OS=Schizosaccharomyces pombe GN=gar2 ... [more]
RBM23_HUMAN4.477e-1231.93Probable RNA-binding protein 23 OS=Homo sapiens GN... [more]
NUCL_CHICK4.477e-1231.25Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1[more]
RBM39_PONAB2.222e-1130.00RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE... [more]
RBM39_HUMAN2.222e-1130.00RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE... [more]
RBM39_MOUSE2.902e-1129.41RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE... [more]
NUCL_PONAB2.902e-1131.41Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3[more]
NUCL_MACFA2.902e-1131.41Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3[more]
NUCL_HUMAN2.902e-1131.41Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3[more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003D09_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884435 ID=CV884435; Name=CV884435; organism=Citrus sinensis; type=EST; length=822bp
ATAAAATGAAACAAAACAATACTTCATACAAGTGAAAAAAGCTGGAAGAA
CTCTTCTTTTCAATGCTTTCTTCATCAGTCGTCACCAAAAGTTGTCTTCT
TCCCAGTGCCAGCTGCAGCCAAGCTAGGTCTATTAGGTGTTCCCCGTCCA
CGTCCACGTCCACCACGACCACCGTCTCTTCCACCACGTCCTCGACCACC
AAATCGACCCCCATCTCTGCCACCACTTCTCCCAAAATCTCTGCCACCAC
TTCTTCCACCTCGGCCACCACTTCTCCCACCACCACTACCAAAATCACCT
CTTTGTTTTGCTTCATCCACGACCAAAGAATAACCGCCGATTTCAGTACC
ACTCATTTCTAAAGCTTTGTTGAAACTATCAGCATCCGTGAAGTCCAAGT
AAGCAATCCCTTTAACAGAACCAGTATCATAATCTTTAGGAACAGAAATC
CTTGTTATCTCTCCACAAGAACCAAAATGTTCTTCCAGGGAAGCCCTAAC
CTGGTCTTCTCCAACCGACGAATCAAAACCCTTAATAAATATTGTGTGGG
CAGCCTGACCTCTCCCTCCCTTCTGGAATGAGTTGCTTTCATTGCCGCCG
CTGTATGGAGTGTAAGCACCTCTTTCACGAGCAAAATCAAGTCTAATAGC
ACGATTACCCAACATTTGACCATTCAACTCAATAGCCTTATGTGCATCCT
CTACAGAGGCAAACTCAACATGTCCATAGCCCTTAAATCTCCCATCCGCA
TCTGAAGATAGACGGACATCAACAACCTCAGCAACTTCACTAAAGAAATT
TTGCACATCAGCTTGTTCCACA
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