CV884434

Overview
NameCV884434
Unique NameCV884434
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length926
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884434_ssr529 microsatellite CV884434_ssr529:529..538. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CV884434 vs. ExPASy Swiss-Prot
Match: CT043_PONAB (UPF0549 protein C20orf43 homolog OS=Pongo abelii PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.826e-23
Identity = 63/148 (42.57%), Postives = 88/148 (59.46%), Query Frame = -3
Query:  526 LSNEPLREPCVIDKLGTIFNKEALVHALLSKN----LPKQYSYIKGLKDLINVKLSRVP---GAEENGDG--------IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEVSVLRERM 924
            LS E LR P V  +LG ++NK+A++  LL K+    L K  S+IK +K++  +KLS  P   G + N  G         RF CP+ GLE NG++RF  +R CG V S +ALKE+K+  C  C   F E D I++NG +E+V VL+ RM
Sbjct:   39 LSQEILRRPIVACELGRLYNKDAVIEFLLDKSAEKALGKAASHIKSIKNVTELKLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLRCCGCVFSERALKEIKAEVCHTCGAAFQEDDVIVLNGTKEDVDVLKTRM 186          
BLAST of CV884434 vs. ExPASy Swiss-Prot
Match: CT043_HUMAN (UPF0549 protein C20orf43 OS=Homo sapiens GN=C20orf43 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 8.826e-23
Identity = 63/148 (42.57%), Postives = 88/148 (59.46%), Query Frame = -3
Query:  526 LSNEPLREPCVIDKLGTIFNKEALVHALLSKN----LPKQYSYIKGLKDLINVKLSRVP---GAEENGDG--------IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEVSVLRERM 924
            LS E LR P V  +LG ++NK+A++  LL K+    L K  S+IK +K++  +KLS  P   G + N  G         RF CP+ GLE NG++RF  +R CG V S +ALKE+K+  C  C   F E D I++NG +E+V VL+ RM
Sbjct:   39 LSQEILRRPIVACELGRLYNKDAVIEFLLDKSAEKALGKAASHIKSIKNVTELKLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLRCCGCVFSERALKEIKAEVCHTCGAAFQEDDVIVLNGTKEDVDVLKTRM 186          
BLAST of CV884434 vs. ExPASy Swiss-Prot
Match: CT043_MACFA (UPF0549 protein C20orf43 homolog OS=Macaca fascicularis GN=QccE-12445 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.153e-22
Identity = 63/148 (42.57%), Postives = 87/148 (58.78%), Query Frame = -3
Query:  526 LSNEPLREPCVIDKLGTIFNKEALVHALLSKN----LPKQYSYIKGLKDLINVKLSRVP---GAEENGDG--------IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEVSVLRERM 924
            LS E LR P V  +LG ++NK+A++  LL K+    L K  S+IK +K++  +KLS  P   G + N  G         RF CP+ GLE NG++RF  +R CG V S +ALKE+K+  C  C   F E D I++NG  E+V VL+ RM
Sbjct:   39 LSQEILRRPIVACELGRLYNKDAVIEFLLDKSAEKALGKAASHIKSIKNVTELKLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLRCCGCVFSERALKEIKAEVCHTCGAAFQEDDVIVLNGTNEDVDVLKARM 186          
BLAST of CV884434 vs. ExPASy Swiss-Prot
Match: CT043_RAT (UPF0549 protein C20orf43 homolog OS=Rattus norvegicus PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.568e-22
Identity = 61/148 (41.22%), Postives = 88/148 (59.46%), Query Frame = -3
Query:  526 LSNEPLREPCVIDKLGTIFNKEALVHALLSKN----LPKQYSYIKGLKDLINVKLSRVP---GAEENGDG--------IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEVSVLRERM 924
            LS E LR P V  +LG ++NK+A++  LL K+    L K  S+I+ +K++  +KLS  P   G + N  G         RF CP+ GLE NG++RF  +R CG V S +ALKE+K+  C  C   F E D I++NG +E+V +L+ RM
Sbjct:   39 LSQEVLRRPIVACELGRLYNKDAVIEFLLDKSAEKALGKATSHIRSIKNVTELKLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLRCCGCVFSERALKEIKAEVCHTCGAAFQEEDIIVLNGTKEDVEMLKRRM 186          
BLAST of CV884434 vs. ExPASy Swiss-Prot
Match: CT043_CHICK (UPF0549 protein C20orf43 homolog OS=Gallus gallus GN=RCJMB04_16p11 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.380e-22
Identity = 61/148 (41.22%), Postives = 88/148 (59.46%), Query Frame = -3
Query:  526 LSNEPLREPCVIDKLGTIFNKEALVHALLSKNLPKQ----YSYIKGLKDLINVKLSRVP---GAEENGDG--------IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEVSVLRERM 924
            LS E L  P V  +LG ++NK+A++  LL K+  K      S+IK LK++  + L+  P   G +E+  G         RF CP+ GLE NG++RF  +R CG V S +ALKE+K+  C  C   F E D I++NGN+E+V VL++RM
Sbjct:   39 LSQEKLCRPIVACELGRLYNKDAVIEFLLDKSADKTPMEAASHIKSLKNVTELNLADNPAWSGDKESKKGDTYDDIQSARFICPVVGLEMNGRHRFCFLRNCGCVFSERALKEIKTEVCHKCGVPFQEEDVIILNGNKEDVEVLKKRM 186          
BLAST of CV884434 vs. ExPASy Swiss-Prot
Match: CT043_BOVIN (UPF0549 protein C20orf43 homolog OS=Bos taurus PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.380e-22
Identity = 61/148 (41.22%), Postives = 88/148 (59.46%), Query Frame = -3
Query:  526 LSNEPLREPCVIDKLGTIFNKEALVHALLSKN----LPKQYSYIKGLKDLINVKLSRVP---GAEENGDG--------IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEVSVLRERM 924
            LS E LR P V  +LG ++NK+A++  LL K+    L K  S+IK +K++  ++LS  P   G + N  G         RF CP+ GLE NG++RF  +R CG V S +ALKE+K+  C  C   F E D I++NG +E+V VL+ R+
Sbjct:   39 LSQEILRRPIVACELGRLYNKDAVIEFLLDKSSEKALGKAASHIKSIKNVTELRLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLRCCGCVFSERALKEIKAEVCHTCGAAFQEDDVIVLNGTKEDVEVLKSRI 186          
BLAST of CV884434 vs. ExPASy Swiss-Prot
Match: CT043_PIG (UPF0549 protein C20orf43 homolog OS=Sus scrofa PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.721e-22
Identity = 61/148 (41.22%), Postives = 89/148 (60.14%), Query Frame = -3
Query:  526 LSNEPLREPCVIDKLGTIFNKEALVHALLSKN----LPKQYSYIKGLKDLINVKLSRVPGAEEN-----GDG------IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEVSVLRERM 924
            LS E LR P V  +LG ++NK+A++  LL K+    L K  S+IK +K++  ++LS  P  E +     GD        RF CP+ GLE NG++RF  +R CG V S +ALKE+K+  C  C   F E D I++NG +E+V++L+ RM
Sbjct:   39 LSQEILRRPIVACELGRLYNKDAVIEFLLDKSSEKALGKAASHIKSIKNVTELRLSDNPAWEGDKGSTKGDKHDDLQRARFICPVVGLEMNGRHRFCYLRCCGCVFSERALKEIKAEVCHTCGAAFQEDDVIVLNGTKEDVAMLQTRM 186          
BLAST of CV884434 vs. ExPASy Swiss-Prot
Match: CT043_MOUSE (UPF0549 protein C20orf43 homolog OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.721e-22
Identity = 60/148 (40.54%), Postives = 89/148 (60.14%), Query Frame = -3
Query:  526 LSNEPLREPCVIDKLGTIFNKEALVHALLSKN----LPKQYSYIKGLKDLINVKLSRVP---GAEENGDG--------IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEVSVLRERM 924
            LS E LR P V  +LG ++NK+A++  LL K+    L K  S+I+ +K++  ++LS  P   G + N  G         RF CP+ GLE NG++RF  +R CG V S +ALKE+K+  C  C   F E D I++NG +E+V +L++RM
Sbjct:   39 LSQEILRRPIVACELGRLYNKDAVIEFLLDKSAEKALGKAASHIRSIKNVTELRLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLRCCGCVFSERALKEIKAEVCHTCGAAFQEEDIIVLNGTKEDVEMLKKRM 186          
BLAST of CV884434 vs. ExPASy Swiss-Prot
Match: U549_DICDI (UPF0549 protein OS=Dictyostelium discoideum GN=DDB_G0288549 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.126e-16
Identity = 51/156 (32.69%), Postives = 81/156 (51.92%), Query Frame = -3
Query:  535 LSNEPLREPCVIDKLGTIFNKEALVHALLSKNL--PKQYSYIKGLKDLINVKLSRVPGAEENGDGIRFQCPITGLEF-NGKYRFVAMRTCGHVLSTKALKEVKSS-----------------------SCLVCHEEFGEMDKILINGNEEEVSVLR 924
            L+ + L EP V+D LG +FNK+ ++ ALL+ +L   K +S+I+ L+ +  V  S  P  E++     + CPIT +E  +  Y+F  ++TCGHV S KA KE+K+                        SC +C +E+   D I IN + EE   ++
Sbjct:   40 LAQDTLSEPIVLDDLGNLFNKDNIIEALLNGSLETSKNFSHIRSLRSIYTVNFSPNPAHEKDSTVSPWLCPITKIEVGSSNYKFKFLKTCGHVFSEKAFKELKNDDSNNNNNNNNNNKKEIDSSKDNLSCFLCSKEYITNDLITINPSGEEFEQMK 195          
BLAST of CV884434 vs. ExPASy Swiss-Prot
Match: YAT9_SCHPO (UPF0549 protein C1D4.09c OS=Schizosaccharomyces pombe GN=SPAC1D4.09c PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.971e-14
Identity = 43/134 (32.09%), Postives = 75/134 (55.97%), Query Frame = -3
Query:  526 LSNEPLREPCVIDKLGTIFNKEALVHALLSKN-LPKQYSYIKGLKDLINVKLSRVPGAEENGDGIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEVSVLRERM 924
            +++EPL  P V   LG ++NK +++  LL ++ +PK  S+IK LKD++ +++       ++   + + CPIT    +  Y+F  +  CGHV    ALK+     C  C++ + E D I IN N E++  L +R+
Sbjct:   42 ITDEPLYPPIVSCGLGKLYNKASILQMLLDRSSVPKSPSHIKSLKDVVQLQVEL-----DDSGKVLWLCPITRHVMSDTYQFAYIVPCGHVFEYSALKQFGEKMCFQCNQVYEEKDVIPINPNAEQLKTLSKRL 170          
The following BLAST results are available for this feature:
BLAST of CV884434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
CT043_PONAB8.826e-2342.57UPF0549 protein C20orf43 homolog OS=Pongo abelii P... [more]
CT043_HUMAN8.826e-2342.57UPF0549 protein C20orf43 OS=Homo sapiens GN=C20orf... [more]
CT043_MACFA1.153e-2242.57UPF0549 protein C20orf43 homolog OS=Macaca fascicu... [more]
CT043_RAT2.568e-2241.22UPF0549 protein C20orf43 homolog OS=Rattus norvegi... [more]
CT043_CHICK4.380e-2241.22UPF0549 protein C20orf43 homolog OS=Gallus gallus ... [more]
CT043_BOVIN4.380e-2241.22UPF0549 protein C20orf43 homolog OS=Bos taurus PE=... [more]
CT043_PIG5.721e-2241.22UPF0549 protein C20orf43 homolog OS=Sus scrofa PE=... [more]
CT043_MOUSE5.721e-2240.54UPF0549 protein C20orf43 homolog OS=Mus musculus P... [more]
U549_DICDI6.126e-1632.69UPF0549 protein OS=Dictyostelium discoideum GN=DDB... [more]
YAT9_SCHPO1.971e-1432.09UPF0549 protein C1D4.09c OS=Schizosaccharomyces po... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003D09_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T3_D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884434 ID=CV884434; Name=CV884434; organism=Citrus sinensis; type=EST; length=926bp
CAGATTTCTAAGATTTATATTATTCAAGTCAAACTTTGACAACAAGAAAA
TGGCAACCTGGACACCCCAATAATTTCTATTCTAAACAATTGAAAGTTAC
AATAGAAGTAGGCAAACAGCAGATCGCTAATGATCAACTAACAAAAGATG
ATTGTTACCATCTTAAGCCATCAACAATCAGTTCCTACCAAGTGGAAGAG
ATCTGCATGAATAGGTCTCTTTAAAATCTGACTTCTTTGACGAAGTAAAG
ATTGATGCATACACTTGCTTATTAGCATTAGGTGGAGCCATATCAGCTGC
TTTGAAACGCTTCACCGCGGGATTACCACTTGCACCGTTCACATTCCCTA
CCTTCCCATTCACGTCCACTTTGGCCAAAGCCTTCTCCCCACTCTTGTTT
TCAACAGCCCCACGCTTAGCCCCACTAACTCTCAACGAATCCACAGCCAC
ATCTTCACCCACACAGTCTTCACCATTCTTCACTTTCTTCACCTTCTTTT
CCTTAACTTTTAACTTCTCTTCTTCCATTCTCTCTCTCAACACCGAGACC
TCCTCTTCATTCCCATTAATCAGAATCTTATCCATTTCCCCAAACTCCTC
ATGGCAAACCAAACATGAGGATGATTTCACCTCTTTCAGTGCTTTAGTAC
TCAACACATGCCCACAAGTTCTCATTGCTACAAACCTATACTTCCCATTA
AACTCTAGTCCTGTTATCGGGCACTGAAACCTAATACCATCACCATTCTC
TTCTGCTCCAGGGACCCTCGAAAGCTTCACATTGATCAAATCCTTCAAAC
CCTTTATATAACTATACTGCTTAGGCAAATTCTTACTCAACAAAGCATGA
ACAAGCGCTTCTTTATTAAAGATGGTACCTAATTTATCGATAACGCATGG
TTCCCTCAACGGCTCATTCGATAACG
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