CV884421

Overview
NameCV884421
Unique NameCV884421
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3221 contig Csv1_Contig3221:52..752. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CV884421 vs. ExPASy Swiss-Prot
Match: RL261_ARATH (60S ribosomal protein L26-1 OS=Arabidopsis thaliana GN=RPL26A PE=2 SV=2)

HSP 1 Score: 209.149 bits (531), Expect = 1.797e-53
Identity = 107/146 (73.29%), Postives = 116/146 (79.45%), Query Frame = -3 
Query:  211 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITXXXXXXXXXXXXXXXXXXXXXXXXXXGTKFTPEDIMQSVD 648
            MKYNPRV+SSRRKNRKAHFTA SS RR++MS+PLSTDLRQKYNVRSMP+RKDDEVQ+VRGTYKGREGKVVQVYRRKWVIHIERITREKVNG+TVNVGI PSKVVIT                          GTKFT ED+MQ+VD
Sbjct:    1 MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLERKAKGRAAADKEKGTKFTSEDVMQNVD 146
[Close]
BLAST of CV884421 vs. ExPASy Swiss-Prot
Match: RL262_ARATH (60S ribosomal protein L26-2 OS=Arabidopsis thaliana GN=RPL26B PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.393e-51
Identity = 102/146 (69.86%), Postives = 115/146 (78.77%), Query Frame = -3 
Query:  211 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITXXXXXXXXXXXXXXXXXXXXXXXXXXGTKFTPEDIMQSVD 648
            MK+NPRVSSSRRKNRKAHFTAPSSVRR+LMS+PLS DLR K+NVRSMP+RKDDEVQVVRGT+KGREGKV+QVYRRKWVIHIERITREKVNGSTVNVG+N S V+IT                          GTKF+ ED+M++VD
Sbjct:    1 MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRGTFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLERKANGRAAADKEKGTKFSAEDVMENVD 146
[Close]
BLAST of CV884421 vs. ExPASy Swiss-Prot
Match: RL26_BRARA (60S ribosomal protein L26 OS=Brassica rapa GN=RPL26 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.288e-47
Identity = 96/145 (66.21%), Postives = 109/145 (75.17%), Query Frame = -3 
Query:  214 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITXXXXXXXXXXXXXXXXXXXXXXXXXXGTKFTPEDIMQSV 648
            MKYNPRV+SSRR+NRK HFTA SS RR+ MS+PLSTDLRQKYNVRSMP+RKDDE Q+VRGTYKGREGK+ QVYRRK VIHIER+TREKVNG+TVNVG+ P+KVVIT                          GTKFT  D+MQ+V
Sbjct:    1 MKYNPRVTSSRRRNRKPHFTASSSERRVXMSSPLSTDLRQKYNVRSMPIRKDDEXQIVRGTYKGREGKLXQVYRRKXVIHIERLTREKVNGTTVNVGVQPTKVVITKLRLDKDRKSLLERKAKGRAAADKDKGTKFTAVDVMQNV 145
[Close]
BLAST of CV884421 vs. ExPASy Swiss-Prot
Match: RL26L_HUMAN (60S ribosomal protein L26-like 1 OS=Homo sapiens GN=RPL26L1 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.613e-39
Identity = 80/107 (74.77%), Postives = 95/107 (88.79%), Query Frame = -3 
Query:  331 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 648
            MK+NP V+S R KNRK HF APS VRR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:    1 MKFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107
[Close]
BLAST of CV884421 vs. ExPASy Swiss-Prot
Match: RL26_MOUSE (60S ribosomal protein L26 OS=Mus musculus GN=Rpl26 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.331e-39
Identity = 79/107 (73.83%), Postives = 95/107 (88.79%), Query Frame = -3 
Query:  331 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 648
            MK+NP V+S R KNRK HF APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:    1 MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107
[Close]
BLAST of CV884421 vs. ExPASy Swiss-Prot
Match: RL26_MACFA (60S ribosomal protein L26 OS=Macaca fascicularis GN=RPL26 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.331e-39
Identity = 79/107 (73.83%), Postives = 95/107 (88.79%), Query Frame = -3 
Query:  331 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 648
            MK+NP V+S R KNRK HF APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:    1 MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107
[Close]
BLAST of CV884421 vs. ExPASy Swiss-Prot
Match: RL26_HUMAN (60S ribosomal protein L26 OS=Homo sapiens GN=RPL26 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.331e-39
Identity = 79/107 (73.83%), Postives = 95/107 (88.79%), Query Frame = -3 
Query:  331 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 648
            MK+NP V+S R KNRK HF APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:    1 MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107
[Close]
BLAST of CV884421 vs. ExPASy Swiss-Prot
Match: RL26_BOVIN (60S ribosomal protein L26 OS=Bos taurus GN=RPL26 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.331e-39
Identity = 79/107 (73.83%), Postives = 95/107 (88.79%), Query Frame = -3 
Query:  331 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 648
            MK+NP V+S R KNRK HF APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:    1 MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107
[Close]
BLAST of CV884421 vs. ExPASy Swiss-Prot
Match: RL26_RAT (60S ribosomal protein L26 OS=Rattus norvegicus GN=Rpl26 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.575e-39
Identity = 79/107 (73.83%), Postives = 94/107 (87.85%), Query Frame = -3 
Query:  331 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 648
            MK+NP V+S R KNRK HF APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI PSKVVIT
Sbjct:    1 MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIRPSKVVIT 107
[Close]
BLAST of CV884421 vs. ExPASy Swiss-Prot
Match: RL26_AILME (60S ribosomal protein L26 OS=Ailuropoda melanoleuca GN=RPL26 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.170e-36
Identity = 77/107 (71.96%), Postives = 92/107 (85.98%), Query Frame = -3 
Query:  331 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 648
            MK  P V+S R KNRK HF APS +RR  +S+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:    1 MKSYPFVTSDRSKNRKRHFNAPSHIRRKTLSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107
The following BLAST results are available for this feature:
BLAST of CV884421 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
RL261_ARATH1.797e-5373.2960S ribosomal protein L26-1 OS=Arabidopsis thalian... [more]
RL262_ARATH6.393e-5169.8660S ribosomal protein L26-2 OS=Arabidopsis thalian... [more]
RL26_BRARA4.288e-4766.2160S ribosomal protein L26 OS=Brassica rapa GN=RPL2... [more]
RL26L_HUMAN5.613e-3974.7760S ribosomal protein L26-like 1 OS=Homo sapiens G... [more]
RL26_MOUSE7.331e-3973.8360S ribosomal protein L26 OS=Mus musculus GN=Rpl26... [more]
RL26_MACFA7.331e-3973.8360S ribosomal protein L26 OS=Macaca fascicularis G... [more]
RL26_HUMAN7.331e-3973.8360S ribosomal protein L26 OS=Homo sapiens GN=RPL26... [more]
RL26_BOVIN7.331e-3973.8360S ribosomal protein L26 OS=Bos taurus GN=RPL26 P... [more]
RL26_RAT9.575e-3973.8360S ribosomal protein L26 OS=Rattus norvegicus GN=... [more]
RL26_AILME1.170e-3671.9660S ribosomal protein L26 OS=Ailuropoda melanoleuc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003C12_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884421 ID=CV884421; Name=CV884421; organism=Citrus sinensis; type=EST; length=701bp
GAAATTTTAAATATAGAATTAAAATTGAAACGACGAGGAGAAAATCCAAA
GAAGTATCTTAAATCTCCAACATAAGCCCATAATCGGATCCTCATGACAT
AACACAATAACAATAGAAATATCTTAGTGACATTGCCAAAACAAAACATC
CTAAATCCATAAATTCTATGATTAAACAAAAACTTTAAAAACAACCTCTT
ATCAAAATTAGTCAACGCTCTGCATAATATCCTCTGGGGTGAACTTGGTA
CCCTTCTCCTTGTCGGCGGCGGCACGTCCCTTGGCCTTGCGATCGAGCAA
AGACTTCCTGTCCTTGTCCAGACGGAGCTTGGTGATCACGACCTTTGATG
GGTTGATTCCCACATTCACAGTGGATCCATTAACCTTCTCGCGAGTGATG
CGCTCGATGTGAATGACCCACTTCCGGCGATACACTTGAACGACTTTGCC
CTCGCGCCCCTTGTAGGTCCCACGCACAACCTGAACCTCGTCGTCCTTGC
GCACAGGCATCGACCTTACGTTGTACTTCTGACGGAGGTCTGTGGACAGC
GGCGCGCTCATCAAGATGCGGCGCACGCTGGAAGGGGCGGTGAAGTGCGC
CTTCCGGTTCTTACGGCGAGAGGATGACACCCTGGGGTTGTACTTCATGG
TGGATGTGGAGGACTGGGCCTAGGGTTTTACAACAGCGGCAGCTAGAGCC
T
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