CV884416

Overview
NameCV884416
Unique NameCV884416
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length870
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884416 vs. ExPASy Swiss-Prot
Match: AMPN_ECOLI (Aminopeptidase N OS=Escherichia coli (strain K12) GN=pepN PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 3.975e-30
Identity = 59/96 (61.46%), Postives = 72/96 (75.00%), Query Frame = 3
Query:  579 ELKVKKNTSLEGIYKSSGNFCTQCEAEGFRKITFYQDRPDIMAKYKCYIEADKSLYPVLLSNGNLIEKGNLEGGRHYALWEDPFKKPCYLFALVAG 866
            E+    NT+LEG+Y+S    CTQCEAEGFR IT+Y DRPD++A++   I ADK  YP LLSNGN + +G LE GRH+  W+DPF KPCYLFALVAG
Sbjct:   97 EISPAANTALEGLYQSGDALCTQCEAEGFRHITYYLDRPDVLARFTTKIIADKIKYPFLLSNGNRVAQGELENGRHWVQWQDPFPKPCYLFALVAG 192          
BLAST of CV884416 vs. ExPASy Swiss-Prot
Match: AMPN_HAEIN (Aminopeptidase N OS=Haemophilus influenzae GN=pepN PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.670e-28
Identity = 58/91 (63.74%), Postives = 69/91 (75.82%), Query Frame = 3
Query:  594 KNTSLEGIYKSSGNFCTQCEAEGFRKITFYQDRPDIMAKYKCYIEADKSLYPVLLSNGNLIEKGNLEGGRHYALWEDPFKKPCYLFALVAG 866
            +NTSL+G+Y+S    CTQCEAEGFR+IT+  DRPD++A+Y   I ADK+ YP LLSNGN I  G LE GRH+  W DPF KP YLFALVAG
Sbjct:  103 ENTSLQGLYQSGEGICTQCEAEGFRQITYMLDRPDVLARYITKITADKTKYPFLLSNGNRIASGELEDGRHWVEWNDPFPKPSYLFALVAG 193          
BLAST of CV884416 vs. ExPASy Swiss-Prot
Match: AMPN_CAUCR (Aminopeptidase N OS=Caulobacter crescentus GN=pepN PE=3 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 6.346e-28
Identity = 57/96 (59.38%), Postives = 71/96 (73.96%), Query Frame = 3
Query:  579 ELKVKKNTSLEGIYKSSGNFCTQCEAEGFRKITFYQDRPDIMAKYKCYIEADKSLYPVLLSNGNLIEKGNLEGGRHYALWEDPFKKPCYLFALVAG 866
            E+    N +L G+Y S G FCTQCEAEGFR IT++ DRPD++++Y   IEAD   +P LLSNGN +  G+L+GGRH+A W DPF KP YLFALVAG
Sbjct:  100 EIDPSSNKALMGLYMSGGRFCTQCEAEGFRTITYFPDRPDVLSRYSVRIEAD-GKFPHLLSNGNPVASGSLDGGRHFAEWSDPFPKPSYLFALVAG 194          
BLAST of CV884416 vs. ExPASy Swiss-Prot
Match: OPD21_ARATH (Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial OS=Arabidopsis thaliana GN=LTA3 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.911e-24
Identity = 71/166 (42.77%), Postives = 95/166 (57.23%), Query Frame = 2
Query:  113 DDAKVQKRSFTKISPSAKLLIPEHGLDASSLQASGPYGTLLKGDVLAAIXXXXXXXXXXXXXXXXXXXFHPQTSPAVSQGSNLELSDSFEDLPNTQIRKAIARRLLELKQTAPHLYLSSSL-------------RNPNIFLAVI*YVI*KHIMVAIRHCTGSSAFF 571
            D    +K  FTKISP+AKLLI EHGL+ASS++ASGPYGTLLK DV+AAI                     P  S + S+ S  +  +++ED PN+QIRK IA+RLLE KQ  PHLYL S +              N  + ++V   VI K + VA+R+   ++AF+
Sbjct:  319 DKPTERKAGFTKISPAAKLLILEHGLEASSIEASGPYGTLLKSDVVAAIASGKASKSSASTKKKQPSKETPSKSSSTSKPSVTQSDNNYEDFPNSQIRKIIAKRLLESKQKIPHLYLQSDVVLDPLLAFRKELQENHGVKVSVNDIVI-KAVAVALRNVRQANAFW 483          
BLAST of CV884416 vs. ExPASy Swiss-Prot
Match: AMP1_PLAFQ (M1 family aminopeptidase OS=Plasmodium falciparum (isolate FcB1 / Columbia) PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 7.261e-24
Identity = 52/90 (57.78%), Postives = 65/90 (72.22%), Query Frame = 3
Query:  597 NTSLEGIYKSSGNFCTQCEAEGFRKITFYQDRPDIMAKYKCYIEADKSLYPVLLSNGNLIEKGNLEGGRHYALWEDPFKKPCYLFALVAG 866
            N +L G+YKS     +QCEA GFR+ITF+ DRPD+MAKY   + ADK  YPVLLSNG+ + +  + GGRH A + DP  KPCYLFA+VAG
Sbjct:  301 NYALTGLYKSKNIIVSQCEATGFRRITFFIDRPDMMAKYDVTVTADKEKYPVLLSNGDKVNEFEIPGGRHGARFNDPHLKPCYLFAVVAG 390          
The following BLAST results are available for this feature:
BLAST of CV884416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
AMPN_ECOLI3.975e-3061.46Aminopeptidase N OS=Escherichia coli (strain K12) ... [more]
AMPN_HAEIN1.670e-2863.74Aminopeptidase N OS=Haemophilus influenzae GN=pepN... [more]
AMPN_CAUCR6.346e-2859.38Aminopeptidase N OS=Caulobacter crescentus GN=pepN... [more]
OPD21_ARATH1.911e-2442.77Dihydrolipoyllysine-residue acetyltransferase comp... [more]
AMP1_PLAFQ7.261e-2457.78M1 family aminopeptidase OS=Plasmodium falciparum ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003C09_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T3_C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884416 ID=CV884416; Name=CV884416; organism=Citrus sinensis; type=EST; length=870bp
CTACATTGATGTTTTAATTTGTTGAAGATCCAGGTGATATTGGATCTGTG
AAGAATTCTGTTACCAGTGGTACTGAGATCAATGGGGAAAAAAAACCCAC
CATGATTCTAAAGATGATGCTAAGGTGCAGAAAAGGAGTTTTACAAAGAT
CAGTCCATCAGCTAAATTGCTTATCCCAGAACATGGATTGGACGCATCAT
CATTGCAGGCATCTGGTCCTTATGGCACTCTACTCAAAGGGGATGTTTTG
GCTGCAATTAAGTCTGAAAAGGCATCTTCAAGAAGTTCTTCACACACAGA
GAAGACATCCCCATCATTCCACCCACAAACCTCACCTGCGGTATCTCAAG
GGTCAAACTTAGAACTGTCAGATTCCTTTGAAGATTTGCCCAATACTCAA
ATTCGCAAGGCTATTGCAAGAAGGTTGCTGGAATTGAAACAGACCGCACC
ACATTTATATTTATCTTCAAGTTTGAGAAACCCAAACATTTTTTTAGCTG
TTATTTAATATGTTATCTAAAAGCATATAATGGTAGCTATCAGACATTGT
ACTGGATCCTCTGCTTTTTTTCAGAAAGGAGCTGAAAGTTAAAAAGAACA
CCTCATTAGAAGGGATTTACAAGTCATCTGGGAATTTCTGTACACAATGT
GAAGCAGAGGGTTTTAGAAAAATTACATTTTATCAGGACCGTCCTGATAT
AATGGCAAAATACAAGTGCTATATTGAAGCTGATAAGTCATTGTACCCAG
TATTGCTGTCTAATGGAAATCTCATAGAGAAAGGAAACCTTGAGGGTGGT
AGACATTATGCCCTTTGGGAGGATCCATTCAAGAAGCCTTGCTACTTGTT
TGCCTTAGTTGCCGGACAGT
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