CV884373

Overview
NameCV884373
Unique NameCV884373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884373 vs. ExPASy Swiss-Prot
Match: DPS1_DICDI (Decaprenyl-diphosphate synthase OS=Dictyostelium discoideum GN=coq1 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.193e-34
Identity = 76/196 (38.78%), Postives = 124/196 (63.27%), Query Frame = -2
Query:  185 EVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELXXXXXXXXXXAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 772
            +V   ++T +  LV GE MQ    S+   S D Y+QKTY KT SLI+NSC++ A+L+G  + +  ++ ++GKNLGLA+Q++DD+LD+TG++   GK +  D+  G+ TAP+L+A +EFPQL  ++++ F +  +V+ A   +  S+GI+KTR L          ++  LP+      ++SR  L+ L+H V+TR K
Sbjct:  269 DVTECMSTALAELVEGEFMQ--AKSNGVVSFDNYLQKTYLKTGSLITNSCRSAAILSGADSNIINISTEFGKNLGLAFQIVDDLLDYTGSAEECGKATSVDLTLGLATAPVLYATQEFPQLEKLIKRKFSEIGDVEEAKRLVALSKGIEKTRNLAIEYCNRAIQSLLKLPQ------SESRDLLITLSHIVVTRTK 456          
BLAST of CV884373 vs. ExPASy Swiss-Prot
Match: DPS1_MOUSE (Decaprenyl-diphosphate synthase subunit 1 OS=Mus musculus GN=Pdss1 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.864e-34
Identity = 77/195 (39.49%), Postives = 123/195 (63.08%), Query Frame = -2
Query:  185 VVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELXXXXXXXXXXAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 769
            VV++LA V+E LV GE +Q+ +  ++     +Y++KT+ KTASLI+NSCKA+++L      V  +A+ YGKN+G+A+QLIDDVLDFT  S  +GK + +D++ GI T P+LFA ++FP++  ++ + F    +VD A +Y+ +S G+Q+T  L           I  L  + + D      AL+ L+  V+TR+K
Sbjct:  221 VVSMLAQVIEDLVRGEFLQLGSKENENERFAHYLEKTFKKTASLIANSCKAVSVLGCPDPVVHEIAYQYGKNVGIAFQLIDDVLDFTSCSDQMGKPTSADLKLGIATGPVLFACQQFPEMNAMIMRRFSLPGDVDRARQYVLQSDGVQQTTYLAQQYCHKAVREIRKLRPSTERD------ALIQLSESVLTRDK 409          
BLAST of CV884373 vs. ExPASy Swiss-Prot
Match: COQ1_NEUCR (Probable hexaprenyl pyrophosphate synthetase, mitochondrial OS=Neurospora crassa GN=NCU02305 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.421e-33
Identity = 85/203 (41.87%), Postives = 123/203 (60.59%), Query Frame = -2
Query:  185 EVVTLLATVVEHLVTGETMQM-TTSSDQRC------SMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELXXXXXXXXXXAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 772
            EVV LLATV+ +LV GE MQ+  T+ D++       ++ YY+QKTY KTASLIS SC+A ALL G  A     A+ YGKNLGLA+QL+DD+LD+T +   LGK + +D+  G+ TAP+LFA +  P+L  +V + FE   +   A E + +S GI++TR L          AI   P++  +D       L+++  + + RNK
Sbjct:  253 EVVELLATVIANLVEGEFMQLKNTARDEKNPKWSEETLTYYLQKTYLKTASLISKSCRASALLGGADAATVDAAYLYGKNLGLAFQLVDDMLDYTRSEKELGKPAGADLELGLATAPLLFAWKTMPELGPLVGRKFEKEGDAARARELVLQSNGIEQTRALAQDYAEKAIEAISGFPDSEAKD------GLIEMAVKTLKRNK 449          
BLAST of CV884373 vs. ExPASy Swiss-Prot
Match: DPS1_HUMAN (Decaprenyl-diphosphate synthase subunit 1 OS=Homo sapiens GN=PDSS1 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.166e-33
Identity = 74/195 (37.95%), Postives = 122/195 (62.56%), Query Frame = -2
Query:  185 VVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELXXXXXXXXXXAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 769
            V+++L  V+E LV GE +Q+ +  ++     +Y++KT+ KTASLI+NSCKA+++L      V  +A+ YGKN+G+A+QLIDDVLDFT  S  +GK + +D++ G+ T P+LFA ++FP++  ++ + F    +VD A +Y+ +S G+Q+T  L           I  L  + + D      AL+ L+  V+TR+K
Sbjct:  227 VISILTQVIEDLVRGEFLQLGSKENENERFAHYLEKTFKKTASLIANSCKAVSVLGCPDPVVHEIAYQYGKNVGIAFQLIDDVLDFTSCSDQMGKPTSADLKLGLATGPVLFACQQFPEMNAMIMRRFSLPGDVDRARQYVLQSDGVQQTTYLAQQYCHEAIREISKLRPSPERD------ALIQLSEIVLTRDK 415          
BLAST of CV884373 vs. ExPASy Swiss-Prot
Match: COQ1_YARLI (Probable hexaprenyl pyrophosphate synthetase, mitochondrial OS=Yarrowia lipolytica GN=COQ1 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.330e-31
Identity = 72/202 (35.64%), Postives = 126/202 (62.38%), Query Frame = -2
Query:  185 EVVTLLATVVEHLVTGETMQM------TTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELXXXXXXXXXXAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 772
            EV+ LL+T + +LV GE MQ+       +    + + +YY+ KTY KTASL+S SC+A A+L+G    +   ++ +GKNLGL +Q++DD+LD++   + LGK + +D++ G+ TAP+LFA E++P+L  ++++ F+   +V+ A   + ++ G+ +TREL           +D LP       ++SR AL +LT +++ R+K
Sbjct:  257 EVIELLSTTIANLVEGEFMQLKNTIVDNSEIANKATFEYYIHKTYLKTASLMSKSCRAAAVLSGARNPIVDASYKFGKNLGLCFQVVDDMLDYSEGESHLGKPAGADLKLGLATAPVLFAWEKYPELGDMIKRKFDGPGDVERARFLVQQADGLSRTRELAQKYCDEAVANLDLLP------YSESREALRNLTMKMMNRSK 452          
BLAST of CV884373 vs. ExPASy Swiss-Prot
Match: PREA_SYNY3 (Prenyl transferase OS=Synechocystis sp. (strain PCC 6803) GN=preA PE=3 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.921e-30
Identity = 73/194 (37.63%), Postives = 117/194 (60.31%), Query Frame = -2
Query:  191 EVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELXXXXXXXXXXAIDSLPENNDEDVTKSRRALLDLTHRVITR 772
            EVV LL+ V+     GE +Q     D    ++ Y++K+Y+KTASLI+NS KA  +L+    +V    ++YGK+LGLA+Q++DD+LDFT  +  LGK + SD+  G ITAP LFAME++P L  ++E+ F  + +++ ALE + +  GI+++REL           +  L      +++  R +LL+L   V+ R
Sbjct:  134 EVVKLLSEVIRDFAEGEILQSINRFDTDTDLETYLEKSYFKTASLIANSAKAAGVLSDAPRDVCDHLYEYGKHLGLAFQIVDDILDFTSPTEVLGKPAGSDLISGNITAPALFAMEKYPLLGKLIEREFAQAGDLEQALELVEQGDGIRRSRELAANQAQLARQHLSVL------EMSAPRESLLELVDYVLGR 321          
BLAST of CV884373 vs. ExPASy Swiss-Prot
Match: PREA_CYAPA (Prenyl transferase OS=Cyanophora paradoxa GN=preA PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.798e-28
Identity = 62/179 (34.64%), Postives = 113/179 (63.13%), Query Frame = -2
Query:  236 EVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELXXXXXXXXXXAIDSLPENNDEDVTK 772
            EVV L++ V+     GE  +         +++ Y++K++YKTASL++ S KA ALL+     VA   ++YG++LGLA+Q++DD+LDFT ++  LGK S SD++ G +TAP+LFA+E+  +L  ++++ F +  + +  L+ + +++ I+KTREL           +++LP ++ ++  K
Sbjct:  134 EVVKLISKVITDFAEGEIRRGLNQFKVDLTLEEYLEKSFYKTASLLAASSKAAALLSHVDLTVANDLYNYGRHLGLAFQIVDDILDFTSSTEELGKPSCSDLKKGNLTAPVLFALEQNSELIPLIQRQFSEPKDFEYTLQIVEETKAIEKTRELAMEHAQVAIQCLENLPPSSSKEALK 312          
BLAST of CV884373 vs. ExPASy Swiss-Prot
Match: PREA_PORPU (Prenyl transferase OS=Porphyra purpurea GN=preA PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.832e-28
Identity = 69/194 (35.57%), Postives = 114/194 (58.76%), Query Frame = -2
Query:  191 EVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELXXXXXXXXXXAIDSLPENNDEDVTKSRRALLDLTHRVITR 772
            EVV ++  V+     GE  Q     D   S+D Y++K++YKTASL++ SC+  A+L    +++    + YGK++GLA+Q++DDVLD  G++ SLGK S +D  +G +TAPILFA+ +  +L  ++++ F D  ++ +AL  + KS GI K ++L           +  LP++          +L +LTH +ITR
Sbjct:  134 EVVKVITKVITDFAEGEIRQGLVHFDPSISIDDYIEKSFYKTASLVAASCRGAAMLNDLNSQMHNDLYLYGKHMGLAFQIMDDVLDIAGSTKSLGKPSGADFMNGNLTAPILFALTQEGKLDQLIQREFSDERDISLALFLIKKSGGITKAKDLAKEQVQAALCCLQFLPKSAPVS------SLKELTHFIITR 321          
BLAST of CV884373 vs. ExPASy Swiss-Prot
Match: DPS1_SCHPO (Decaprenyl-diphosphate synthase subunit 1 OS=Schizosaccharomyces pombe GN=dps1 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.923e-28
Identity = 72/202 (35.64%), Postives = 118/202 (58.42%), Query Frame = -2
Query:  185 EVVTLLATVVEHLVTGETMQMTTSSD------QRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELXXXXXXXXXXAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 772
            +V  LLATV+  LV GE +Q+  + D      ++ + DYY++K++ KTASLIS SCKA  +L   +  VA  A +YG+ +G A+QL+DDVLD+T    +LGK + +D++ G+ TAP+LFA +++P+L  ++   F   S++  A   +  +  I++T             ++  LP+      + +R+AL  L  +VITR K
Sbjct:  183 QVTELLATVIADLVRGEFLQLKNTMDPSSLEIKQSNFDYYIEKSFLKTASLISKSCKASTILGQCSPTVATAAGEYGRCIGTAFQLMDDVLDYTSKDDTLGKAAGADLKLGLATAPVLFAWKKYPELGAMIVNRFNHPSDIQRARSLVECTDAIEQTITWAKEYIKKAKDSLLCLPD------SPARKALFALADKVITRKK 378          
BLAST of CV884373 vs. ExPASy Swiss-Prot
Match: COQ1_YEAST (Hexaprenyl pyrophosphate synthetase, mitochondrial OS=Saccharomyces cerevisiae GN=COQ1 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.988e-27
Identity = 67/179 (37.43%), Postives = 108/179 (60.34%), Query Frame = -2
Query:  185 MQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELXXXXXXXXXXAI-DSLPENNDEDVTKSRRALLDLTHRVITRNK 718
            +Q++       + +YY+ KTY KTA+LIS SC+  A+L+G +  V    +D+G+NLG+ +QL+DD+LDFT +   LGK S +D++ GI TAP+LFA +E P L  ++ + F +  +V+  ++ +    GI KT+ L           + DSLPE++      +R AL  LT+ ++TR K
Sbjct:  301 LQLSHDQIIETAFEYYIHKTYLKTAALISKSCRCAAILSGASPAVIDECYDFGRNLGICFQLVDDMLDFTVSGKDLGKPSGADLKLGIATAPVLFAWKEDPSLGPLISRNFSERGDVEKTIDSVRLHNGIAKTKILAEEYRDKALQNLRDSLPESD------ARSALEFLTNSILTRRK 473          
The following BLAST results are available for this feature:
BLAST of CV884373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
DPS1_DICDI2.193e-3438.78Decaprenyl-diphosphate synthase OS=Dictyostelium d... [more]
DPS1_MOUSE2.864e-3439.49Decaprenyl-diphosphate synthase subunit 1 OS=Mus m... [more]
COQ1_NEUCR1.421e-3341.87Probable hexaprenyl pyrophosphate synthetase, mito... [more]
DPS1_HUMAN3.166e-3337.95Decaprenyl-diphosphate synthase subunit 1 OS=Homo ... [more]
COQ1_YARLI1.330e-3135.64Probable hexaprenyl pyrophosphate synthetase, mito... [more]
PREA_SYNY31.921e-3037.63Prenyl transferase OS=Synechocystis sp. (strain PC... [more]
PREA_CYAPA1.798e-2834.64Prenyl transferase OS=Cyanophora paradoxa GN=preA ... [more]
PREA_PORPU6.832e-2835.57Prenyl transferase OS=Porphyra purpurea GN=preA PE... [more]
DPS1_SCHPO8.923e-2835.64Decaprenyl-diphosphate synthase subunit 1 OS=Schiz... [more]
COQ1_YEAST1.988e-2737.43Hexaprenyl pyrophosphate synthetase, mitochondrial... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003A06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884373 ID=CV884373; Name=CV884373; organism=Citrus sinensis; type=EST; length=773bp
CCTTACTCCACAAATGGATGATTTACAGATCTGGGTCCTCGAATAATGAT
CGGAAAATAAATATTTTTATCAGAAGAAAAGAATGTGACAAAAAAAACCA
AGGGGTTAAAGTCCCTCGCCTTACAAGAAGAATAATTGAAATAATTAAAC
AAAAACTCTGGCACAATGTGTTGGTCTTCTGTTATTTATTTCTTGTGATG
ACTCTATGAGTGAGATCTAAAAGTGCACGCCTTGACTTTGTAACATCCTC
ATCATTGTTTTCAGGTAGAGAATCAATCGCAGCTGCAGCAAGATTAGCAT
GCTTCACGGCCAGTTCTCTTGTCTTTTGTATCCCTCGACTCTTCCCAAGG
TACTCAAGGGCAATATCAACATTTGAGGAATCCTCGAAGCCTTGCTCAAC
TACTGTGCGTAACTGAGGGAACTCTTCCATGGCAAACAATATTGGAGCTG
TTATGATTCCATGCCGGATGTCAGATAAAGAACCCTTTCCAAGAGAGGCT
GATGTGCCAGTGAAATCGAGAACATCGTCGATTAATTGATATGCCAGACC
CAGATTCTTTCCATAATCAAAAGCTAATATTGCCACTTCGGCTGTTTGTC
CAGCAAGAAGGGCAATTGCCTTGCAGCTGTTTGAGATTAATGATGCGGTC
TTGTAGTATGTTTTTTGCATATAATAATCCATGCTACAACGTTGGTCAGA
TGATGTTGTCATTTGCATGGTTTCACCAGTAACAAGATGCTCTACAACGG
TTGCCAGTAACGTCACAACCTCT
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