CV884256
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CV884256 vs. ExPASy Swiss-Prot
Match: TM165_HUMAN (Transmembrane protein 165 OS=Homo sapiens GN=TMEM165 PE=1 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 1.645e-37 Identity = 93/233 (39.91%), Postives = 139/233 (59.66%), Query Frame = 3 Query: 51 VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFS---DGGXXXXXXXXX--KKLDADFKANA-----GATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVVGGKSLASQISEKIVALSGGVLFIVFGIQS-FLSP 716 + F ++++ ++SE+GDKTFF AAI+AMR+ R VL+G + AL +MT LS + G+ A +I R T++++TVLF FG+ L + D G KK D +F+ G + G+ KK L F SPIF++A ++TF EWGD+SQL TI LAA E+P+GV +GG +G LCT AV+GG+ +A +IS + V + GG++F+ F + F+SP Sbjct: 94 IHAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALGLMTCLSVLFGY-ATTVIPRVYTYYVSTVLFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDEEFQRTKLLNGPGDVETGTSITVPQKKW-----LHFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFAFSALFISP 320
BLAST of CV884256 vs. ExPASy Swiss-Prot
Match: TM165_RAT (Transmembrane protein 165 OS=Rattus norvegicus GN=Tmem165 PE=2 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 2.149e-37 Identity = 92/232 (39.66%), Postives = 138/232 (59.48%), Query Frame = 3 Query: 51 VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFS---DGGXXXXXXXXX--KKLDADFKA----NAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVVGGKSLASQISEKIVALSGGVLFIVFGIQS-FLSP 716 + F ++++ ++SE+GDKTFF AAI+AMR+ R VL+G + AL +MT LS + G+ A +I R T++++T LF FG+ L + D G KK D +F+ N + G+ KK L F SPIF++A ++TF EWGD+SQL TI LAA E+P+GV +GG +G LCT AV+GG+ +A +IS + V + GG++F+ F + F+SP Sbjct: 94 IHAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALALMTCLSVLFGY-ATTVIPRVYTYYVSTALFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDEEFQRTKLLNGPDVETGTSTAIPQKKW-----LHFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFAFSALFISP 319
BLAST of CV884256 vs. ExPASy Swiss-Prot
Match: TM165_MOUSE (Transmembrane protein 165 OS=Mus musculus GN=Tmem165 PE=2 SV=2) HSP 1 Score: 155.992 bits (393), Expect = 2.149e-37 Identity = 92/232 (39.66%), Postives = 138/232 (59.48%), Query Frame = 3 Query: 51 VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFS---DGGXXXXXXXXX--KKLDADFKA----NAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVVGGKSLASQISEKIVALSGGVLFIVFGIQS-FLSP 716 + F ++++ ++SE+GDKTFF AAI+AMR+ R VL+G + AL +MT LS + G+ A +I R T++++T LF FG+ L + D G KK D +F+ N + G+ KK L F SPIF++A ++TF EWGD+SQL TI LAA E+P+GV +GG +G LCT AV+GG+ +A +IS + V + GG++F+ F + F+SP Sbjct: 94 IHAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALALMTCLSVLFGY-ATTVIPRVYTYYVSTALFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDEEFQRTKLLNGPDVETGTSTAIPQKKW-----LHFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFAFSALFISP 319
BLAST of CV884256 vs. ExPASy Swiss-Prot
Match: YD68_SCHPO (UPF0016 membrane protein C17G8.08c OS=Schizosaccharomyces pombe GN=SPAC17G8.08c PE=2 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 1.703e-34 Identity = 86/230 (37.39%), Postives = 124/230 (53.91%), Query Frame = 3 Query: 69 SLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGXXXXXXXXXKKLDADFKANA--------GA---------TKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVVGGKSLASQISEKIVALSGGVLFIVFGIQSF 707 S++M EIGDKTF AA+LA + R V +G AL +MT+L ++G AP L RKLT + VLF FG+ L +A + + + AN GA ++ G +LK + R + FSP+F+KAF++TF EWGD+SQ+ATI +AA +N +GV +G +G A CT AV+ GK ++++I V GG+LFI FG+ F Sbjct: 53 SISMIFGCEIGDKTFIVAALLAFENSRLTVFAGSYSALFIMTLLGVLLGHAAPLLFPRKLTDILGGVLFVIFGIKMLMEAKEVMDSKESMSDEFQNVRNEIAANGPIDQLLEEGAAPSHYTGHRSRSGHTLMSQLKSKGRNVMATLFSPLFIKAFALTFVSEWGDRSQIATIAMAASDNVYGVFMGANVGHACCTALAVISGKYISTKIKVHKVMFIGGILFIAFGLVYF 282
BLAST of CV884256 vs. ExPASy Swiss-Prot
Match: Y615_SYNY3 (UPF0016 membrane protein sll0615 OS=Synechocystis sp. (strain PCC 6803) GN=sll0615 PE=3 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 1.703e-34 Identity = 88/224 (39.29%), Postives = 128/224 (57.14%), Query Frame = 3 Query: 48 VVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGXXXXXXXXXKKLDADFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVVGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPV 719 ++ FT L + +SE+GDKTFF A ILAMR+PRR VL G +G L MTILS ++G + L +R + ++ LF FG LWDA K A+ + A K + + +LK R + I +++F++TF EWGD++Q+ATI LAA N +GV G I+G +C AV+GGK +A +ISEK V L GG+LF +F + S+ + + Sbjct: 1 MLTAFTAGLLLITVSELGDKTFFIAMILAMRYPRRWVLVGVVGGLAAMTILSVLMGQIFTFLPTRYI-NYAEVALFLIFGTKLLWDA------------RRIKATANLEEMEDAEKAIASGEKKLKIVPRGW------GIVVESFALTFVAEWGDRTQIATIALAASNNAWGVSAGAILGHTICAVIAVMGGKFVAGRISEKTVTLIGGLLFYLFAVVSWWTKI 205
BLAST of CV884256 vs. ExPASy Swiss-Prot
Match: YB37_YEAST (UPF0016 membrane protein YBR187W OS=Saccharomyces cerevisiae GN=YBR187W PE=1 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.263e-29 Identity = 82/237 (34.60%), Postives = 125/237 (52.74%), Query Frame = 3 Query: 33 SKMSSVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFS---DGGXXXXXXXXXKKL-------DADFKANAGATK-----EGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVVGGKSLASQISEKIVALSGGVLFIVFGI 698 S SS ++ F S++M LSEIGDKTF AA++AMRH R LV S +L +MTILS VVG A +S + T +LF FG + D G +++ D D G T + + ++ + R FSP++++ F + F GE GD+SQ++ I +A D + + V+ G +IG A+C+ AVVGGK LA++IS + + L+ +LF +F + Sbjct: 33 SGSSSHLKSFLMSVSMIGLSEIGDKTFLIAALMAMRHKRVLVFSAAATSLAIMTILSGVVGHSAVAFLSERYTAFFAGILFLVFGYKLTMEGLEMSKDAGVEEEMAEVEEEIAIKDMNQDMDDVEKGGDTAYDKQLKNASIGKKIVHRIRELASFMFSPVWVQIFLMVFLGELGDRSQISIIAMATDSDYWYVIAGAVIGHAICSGLAVVGGKLLATRISIRTITLASSLLFFIFAL 269
BLAST of CV884256 vs. ExPASy Swiss-Prot
Match: YLY5_SCHPO (UPF0016 membrane protein C186.05c OS=Schizosaccharomyces pombe GN=SPAC186.05c PE=2 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 9.690e-22 Identity = 76/245 (31.02%), Postives = 117/245 (47.76%), Query Frame = 3 Query: 12 SLCSLKISKMSSVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGXXXXXXXXXKKL------DADFKANAGATKEGSKADDELKKQR----------RPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVVGGKSLASQISEKIVALSGGVLFIVFGI 698 +L SL+ S S VQ S++M + E+GDK+F A+LA ++ R V G AL MT + +VG AP L + +TH + LF FG+ L ++ K+ + D K S K + + + FS F+KAF++ F E GD+SQ+ATI ++A E V +G IG LCT AV+ G+ ++++I V GG++F++FGI Sbjct: 13 TLGSLQFSHGS--VQNIGMSISMIIGCELGDKSFIVTALLAYQYGRASVFFGSYLALFFMTSFAVLVGRAAPFLFPKSITHILGGTLFLIFGVKMLKESKEVRESQQSLENEFDKVEKIIVNEEDMKKTLELGLPASNRSSSTLKDKFFKVFSMSCFKNLFSKKFSRAFIKAFALIFVSELGDRSQIATIVMSAKEKVLDVFIGVNIGHMLCTMVAVIVGRYISNKIEMYKVLFFGGIVFMIFGI 255 The following BLAST results are available for this feature:
BLAST of CV884256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CV884256 ID=CV884256; Name=CV884256; organism=Citrus sinensis; type=EST; length=780bpback to top |