CV884256

Overview
NameCV884256
Unique NameCV884256
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2052 contig Csv1_Contig2052:39..819. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884256 vs. ExPASy Swiss-Prot
Match: TM165_HUMAN (Transmembrane protein 165 OS=Homo sapiens GN=TMEM165 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.645e-37
Identity = 93/233 (39.91%), Postives = 139/233 (59.66%), Query Frame = 3
Query:   51 VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFS---DGGXXXXXXXXX--KKLDADFKANA-----GATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVVGGKSLASQISEKIVALSGGVLFIVFGIQS-FLSP 716
            +  F  ++++ ++SE+GDKTFF AAI+AMR+ R  VL+G + AL +MT LS + G+ A  +I R  T++++TVLF  FG+  L +      D G           KK D +F+        G  + G+      KK      L F SPIF++A ++TF  EWGD+SQL TI LAA E+P+GV +GG +G  LCT  AV+GG+ +A +IS + V + GG++F+ F   + F+SP
Sbjct:   94 IHAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALGLMTCLSVLFGY-ATTVIPRVYTYYVSTVLFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDEEFQRTKLLNGPGDVETGTSITVPQKKW-----LHFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFAFSALFISP 320          
BLAST of CV884256 vs. ExPASy Swiss-Prot
Match: TM165_RAT (Transmembrane protein 165 OS=Rattus norvegicus GN=Tmem165 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.149e-37
Identity = 92/232 (39.66%), Postives = 138/232 (59.48%), Query Frame = 3
Query:   51 VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFS---DGGXXXXXXXXX--KKLDADFKA----NAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVVGGKSLASQISEKIVALSGGVLFIVFGIQS-FLSP 716
            +  F  ++++ ++SE+GDKTFF AAI+AMR+ R  VL+G + AL +MT LS + G+ A  +I R  T++++T LF  FG+  L +      D G           KK D +F+     N    + G+      KK      L F SPIF++A ++TF  EWGD+SQL TI LAA E+P+GV +GG +G  LCT  AV+GG+ +A +IS + V + GG++F+ F   + F+SP
Sbjct:   94 IHAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALALMTCLSVLFGY-ATTVIPRVYTYYVSTALFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDEEFQRTKLLNGPDVETGTSTAIPQKKW-----LHFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFAFSALFISP 319          
BLAST of CV884256 vs. ExPASy Swiss-Prot
Match: TM165_MOUSE (Transmembrane protein 165 OS=Mus musculus GN=Tmem165 PE=2 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 2.149e-37
Identity = 92/232 (39.66%), Postives = 138/232 (59.48%), Query Frame = 3
Query:   51 VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFS---DGGXXXXXXXXX--KKLDADFKA----NAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVVGGKSLASQISEKIVALSGGVLFIVFGIQS-FLSP 716
            +  F  ++++ ++SE+GDKTFF AAI+AMR+ R  VL+G + AL +MT LS + G+ A  +I R  T++++T LF  FG+  L +      D G           KK D +F+     N    + G+      KK      L F SPIF++A ++TF  EWGD+SQL TI LAA E+P+GV +GG +G  LCT  AV+GG+ +A +IS + V + GG++F+ F   + F+SP
Sbjct:   94 IHAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALALMTCLSVLFGY-ATTVIPRVYTYYVSTALFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDEEFQRTKLLNGPDVETGTSTAIPQKKW-----LHFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFAFSALFISP 319          
BLAST of CV884256 vs. ExPASy Swiss-Prot
Match: YD68_SCHPO (UPF0016 membrane protein C17G8.08c OS=Schizosaccharomyces pombe GN=SPAC17G8.08c PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.703e-34
Identity = 86/230 (37.39%), Postives = 124/230 (53.91%), Query Frame = 3
Query:   69 SLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGXXXXXXXXXKKLDADFKANA--------GA---------TKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVVGGKSLASQISEKIVALSGGVLFIVFGIQSF 707
            S++M    EIGDKTF  AA+LA  + R  V +G   AL +MT+L  ++G  AP L  RKLT  +  VLF  FG+  L +A              + +  +  AN         GA         ++ G     +LK + R  +   FSP+F+KAF++TF  EWGD+SQ+ATI +AA +N +GV +G  +G A CT  AV+ GK ++++I    V   GG+LFI FG+  F
Sbjct:   53 SISMIFGCEIGDKTFIVAALLAFENSRLTVFAGSYSALFIMTLLGVLLGHAAPLLFPRKLTDILGGVLFVIFGIKMLMEAKEVMDSKESMSDEFQNVRNEIAANGPIDQLLEEGAAPSHYTGHRSRSGHTLMSQLKSKGRNVMATLFSPLFIKAFALTFVSEWGDRSQIATIAMAASDNVYGVFMGANVGHACCTALAVISGKYISTKIKVHKVMFIGGILFIAFGLVYF 282          
BLAST of CV884256 vs. ExPASy Swiss-Prot
Match: Y615_SYNY3 (UPF0016 membrane protein sll0615 OS=Synechocystis sp. (strain PCC 6803) GN=sll0615 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.703e-34
Identity = 88/224 (39.29%), Postives = 128/224 (57.14%), Query Frame = 3
Query:   48 VVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGXXXXXXXXXKKLDADFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVVGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPV 719
            ++  FT  L +  +SE+GDKTFF A ILAMR+PRR VL G +G L  MTILS ++G +   L +R + ++    LF  FG   LWDA               K  A+ +    A K  +  + +LK   R +       I +++F++TF  EWGD++Q+ATI LAA  N +GV  G I+G  +C   AV+GGK +A +ISEK V L GG+LF +F + S+ + +
Sbjct:    1 MLTAFTAGLLLITVSELGDKTFFIAMILAMRYPRRWVLVGVVGGLAAMTILSVLMGQIFTFLPTRYI-NYAEVALFLIFGTKLLWDA------------RRIKATANLEEMEDAEKAIASGEKKLKIVPRGW------GIVVESFALTFVAEWGDRTQIATIALAASNNAWGVSAGAILGHTICAVIAVMGGKFVAGRISEKTVTLIGGLLFYLFAVVSWWTKI 205          
BLAST of CV884256 vs. ExPASy Swiss-Prot
Match: YB37_YEAST (UPF0016 membrane protein YBR187W OS=Saccharomyces cerevisiae GN=YBR187W PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.263e-29
Identity = 82/237 (34.60%), Postives = 125/237 (52.74%), Query Frame = 3
Query:   33 SKMSSVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFS---DGGXXXXXXXXXKKL-------DADFKANAGATK-----EGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVVGGKSLASQISEKIVALSGGVLFIVFGI 698
            S  SS ++ F  S++M  LSEIGDKTF  AA++AMRH R LV S    +L +MTILS VVG  A   +S + T     +LF  FG     +      D G         +++       D D     G T      + +    ++  + R      FSP++++ F + F GE GD+SQ++ I +A D + + V+ G +IG A+C+  AVVGGK LA++IS + + L+  +LF +F +
Sbjct:   33 SGSSSHLKSFLMSVSMIGLSEIGDKTFLIAALMAMRHKRVLVFSAAATSLAIMTILSGVVGHSAVAFLSERYTAFFAGILFLVFGYKLTMEGLEMSKDAGVEEEMAEVEEEIAIKDMNQDMDDVEKGGDTAYDKQLKNASIGKKIVHRIRELASFMFSPVWVQIFLMVFLGELGDRSQISIIAMATDSDYWYVIAGAVIGHAICSGLAVVGGKLLATRISIRTITLASSLLFFIFAL 269          
BLAST of CV884256 vs. ExPASy Swiss-Prot
Match: YLY5_SCHPO (UPF0016 membrane protein C186.05c OS=Schizosaccharomyces pombe GN=SPAC186.05c PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.690e-22
Identity = 76/245 (31.02%), Postives = 117/245 (47.76%), Query Frame = 3
Query:   12 SLCSLKISKMSSVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGXXXXXXXXXKKL------DADFKANAGATKEGSKADDELKKQR----------RPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVVGGKSLASQISEKIVALSGGVLFIVFGI 698
            +L SL+ S  S  VQ    S++M +  E+GDK+F   A+LA ++ R  V  G   AL  MT  + +VG  AP L  + +TH +   LF  FG+  L ++               K+      + D K         S       K +          +    + FS  F+KAF++ F  E GD+SQ+ATI ++A E    V +G  IG  LCT  AV+ G+ ++++I    V   GG++F++FGI
Sbjct:   13 TLGSLQFSHGS--VQNIGMSISMIIGCELGDKSFIVTALLAYQYGRASVFFGSYLALFFMTSFAVLVGRAAPFLFPKSITHILGGTLFLIFGVKMLKESKEVRESQQSLENEFDKVEKIIVNEEDMKKTLELGLPASNRSSSTLKDKFFKVFSMSCFKNLFSKKFSRAFIKAFALIFVSELGDRSQIATIVMSAKEKVLDVFIGVNIGHMLCTMVAVIVGRYISNKIEMYKVLFFGGIVFMIFGI 255          
The following BLAST results are available for this feature:
BLAST of CV884256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TM165_HUMAN1.645e-3739.91Transmembrane protein 165 OS=Homo sapiens GN=TMEM1... [more]
TM165_RAT2.149e-3739.66Transmembrane protein 165 OS=Rattus norvegicus GN=... [more]
TM165_MOUSE2.149e-3739.66Transmembrane protein 165 OS=Mus musculus GN=Tmem1... [more]
YD68_SCHPO1.703e-3437.39UPF0016 membrane protein C17G8.08c OS=Schizosaccha... [more]
Y615_SYNY31.703e-3439.29UPF0016 membrane protein sll0615 OS=Synechocystis ... [more]
YB37_YEAST1.263e-2934.60UPF0016 membrane protein YBR187W OS=Saccharomyces ... [more]
YLY5_SCHPO9.690e-2231.02UPF0016 membrane protein C186.05c OS=Schizosacchar... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002C05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884256 ID=CV884256; Name=CV884256; organism=Citrus sinensis; type=EST; length=780bp
GCTTATGTGACTCTCTCTGTTCGTTGAAGATATCAAAGATGAGCTCAGTT
GTGCAGGGTTTTACCAAGTCGCTTGCCATGACTGTTCTATCCGAGATCGG
CGACAAGACGTTTTTTGCCGCTGCGATCTTGGCAATGCGTCACCCGCGGA
GACTAGTCTTGTCAGGTTGCCTGGGAGCTTTGATTGTGATGACTATTCTT
TCTGCTGTTGTTGGCTGGGTCGCTCCAAATCTGATCTCTCGTAAATTGAC
TCATCATATAACAACAGTGCTGTTCTTTGGATTTGGTCTATGGTCTTTAT
GGGATGCCTTTAGTGATGGAGGGGAGGCTGAAGAATTTGAAGAAGTTGAA
AAAAAGCTGGATGCTGACTTTAAAGCAAATGCAGGAGCAACCAAAGAGGG
CAGCAAGGCTGATGATGAATTAAAAAAGCAAAGGCGGCCATTCCTCTTAC
AGTTCTTCTCTCCCATCTTTTTGAAGGCATTTTCAATTACTTTCTTTGGT
GAATGGGGTGACAAGAGCCAGTTAGCTACCATTGGTTTAGCTGCCGATGA
GAACCCATTTGGAGTTGTTCTTGGTGGAATTATAGGACAAGCATTGTGTA
CGACTGCTGCTGTTGTTGGAGGAAAGAGCTTGGCGTCTCAAATATCTGAG
AAAATAGTTGCACTCTCGGGTGGAGTTCTCTTCATTGTTTTTGGAATTCA
ATCCTTCCTTTCGCCGGTTAAGTCATAATCCCCACAATGATGTTAGTGGG
ATTGAAAGCTGATTTGGTGAATTGAAGAAT
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