CX673503

Overview
NameCX673503
Unique NameCX673503
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX673503 vs. ExPASy Swiss-Prot
Match: CIA2_ARATH (Protein CHLOROPLAST IMPORT APPARATUS 2 OS=Arabidopsis thaliana GN=CIA2 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.354e-34
Identity = 94/200 (47.00%), Postives = 108/200 (54.00%), Query Frame = -2
Query:  274 GGKLELGFGMRSGMKALRQVDEGNWWNF-PIDVLQISPKF------------NNSSGTGNSNXXXXXXXXXXXXXXXXXXXXXXXXELPAKEESPIPKANSGELLLKLQYDDVLNAWSDKGSPFLDESLAPDGQGNDVSARLAQIDLFSDGGLREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRRPNSS 834
            G    LG G+RS   ALR+ D+   W    +D  QISP+             +     G                           E  + E++          LLKL YD VL AWSDK SPF DE      +  DV+ARLAQIDLF D G+REASVLRYKEKRRTRLFSKKIRYQVRK+NAD+RPRMKGRFVRRPN S
Sbjct:  235 GFNFPLGLGLRS---ALRENDDTKLWKIHTVDFEQISPRIQTVKTETAISTVDEEKSDGKKVVISGEKSNKKKKKKKMTVTTTLITESKSLEDTEETSLKRTGPLLKLDYDGVLEAWSDKTSPFPDE--IQGSEAVDVNARLAQIDLFGDSGMREASVLRYKEKRRTRLFSKKIRYQVRKLNADQRPRMKGRFVRRPNES 429          
BLAST of CX673503 vs. ExPASy Swiss-Prot
Match: COL16_ARATH (Zinc finger protein CONSTANS-LIKE 16 OS=Arabidopsis thaliana GN=COL16 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.852e-17
Identity = 54/119 (45.38%), Postives = 70/119 (58.82%), Query Frame = -2
Query:  271 LLLKLQYDDVLNAWSDKGSPFLDESLAPDGQGNDVSARLA---------------------QIDLFSDGGLREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRRPNSSA 564
            L+L+L YD V++ W  +G P+   S  P  +  D+S   A                         F DGG REA V RY+EKRRTRLFSKKIRY+VRK+NA++RPRMKGRFV+R + +A
Sbjct:  293 LMLRLNYDSVISTWGGQGPPW--SSGEPPERDMDISGWPAFSMVENGGESTHQKQYVGGCLPSSGFGDGG-REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASLAA 408          
BLAST of CX673503 vs. ExPASy Swiss-Prot
Match: COL7_ARATH (Zinc finger protein CONSTANS-LIKE 7 OS=Arabidopsis thaliana GN=COL7 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.416e-16
Identity = 53/126 (42.06%), Postives = 69/126 (54.76%), Query Frame = -2
Query:  286 ESPIPKANSGELLLKLQYDDVLNAWSDKGSPF----------------------LDESLAPDGQGNDVSARLAQIDLFSDGGLREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRR 597
            E+   K     L L+L Y  V++AW + GSP+                       ++ ++ DG       R    D     G REA VLRYKEKRRTRLFSKKIRY+VRK+NA++RPR+KGRFV+R
Sbjct:  266 EASNDKDRKTSLFLRLDYGAVISAWDNHGSPWKTGIKPECMLGGNTCLPHVVGGYEKLMSSDGSVTRQQGR----DGGGSDGEREARVLRYKEKRRTRLFSKKIRYEVRKLNAEQRPRIKGRFVKR 387          
BLAST of CX673503 vs. ExPASy Swiss-Prot
Match: COL6_ARATH (Zinc finger protein CONSTANS-LIKE 6 OS=Arabidopsis thaliana GN=COL6 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 4.119e-16
Identity = 50/112 (44.64%), Postives = 65/112 (58.04%), Query Frame = -2
Query:  286 LLLKLQYDDVLNAWSDKGSPF-------------------LDESLAPDGQGNDVSARLAQIDLFSDGGLREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRR 564
            L+L+L Y+ V++ W  +G P+                   + ES A     N        +    DGG REA V RY+EKRRTRLFSKKIRY+VRK+NA++RPRMKGRFV+R
Sbjct:  289 LMLRLDYESVISTWGGQGIPWTARVPSEIDLDMVCFPTHTMGESGAEAHHHNHFRGLGLHLGDAGDGG-REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKR 399          
BLAST of CX673503 vs. ExPASy Swiss-Prot
Match: COL8_ARATH (Zinc finger protein CONSTANS-LIKE 8 OS=Arabidopsis thaliana GN=COL8 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.260e-14
Identity = 45/97 (46.39%), Postives = 56/97 (57.73%), Query Frame = -2
Query:  286 KLQYDDVLNAWSDKGSPFLDESLAPDGQGNDVSARLAQIDLFSDG-------GLREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRR 555
            +L Y++V+ AW  + SP             DV    +   L   G         REA V RY++KR+ RLF KKIRY+VRKVNAD+RPRMKGRFVRR
Sbjct:  223 RLNYENVIAAWDKQESP------------RDVKNNTSSFQLVPPGIEEKRVRSEREARVWRYRDKRKNRLFEKKIRYEVRKVNADKRPRMKGRFVRR 307          
The following BLAST results are available for this feature:
BLAST of CX673503 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CIA2_ARATH3.354e-3447.00Protein CHLOROPLAST IMPORT APPARATUS 2 OS=Arabidop... [more]
COL16_ARATH2.852e-1745.38Zinc finger protein CONSTANS-LIKE 16 OS=Arabidopsi... [more]
COL7_ARATH1.416e-1642.06Zinc finger protein CONSTANS-LIKE 7 OS=Arabidopsis... [more]
COL6_ARATH4.119e-1644.64Zinc finger protein CONSTANS-LIKE 6 OS=Arabidopsis... [more]
COL8_ARATH2.260e-1446.39Zinc finger protein CONSTANS-LIKE 8 OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_23B01_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-23B01-C1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX673503 ID=CX673503; Name=CX673503; organism=Citrus sinensis; type=EST; length=850bp
TTTTTTTTTTTTTTTTTAACAAAGAGAACTACATATATTTAGAAATTAAT
TAGAACAAGGCAAAATCCTTTGGCCTATATCTCTAATTCATCACTCTTCT
TTAAACTAGTCCTCATCTCCTTAGCTTTTTTAGTGTTAAGGGAAAGGGAA
AAAAAAACAAAAGAACAAAAAAAAAAAAAGTAATCAAAACAACAAAAAGA
AAAAGGAAAGAGTTGGCCATGTTCATAAATCAAAAAGCATGACGACTTTC
TTCTTCCCCCTTTCATCTTGAGCACTTGAATTTGGCCGTCTCACAAAACG
CCCCTTCATTCTGGGCCGACGATCGGCGTTGACTTTTCTGACTTGGTACC
TGATCTTCTTAGAGAACAGGCGCGTACGCCGCTTTTCTTTGTAGCGCAAC
ACACTAGCCTCTCTCAATCCACCGTCGGAGAACAAATCAATCTGTGCCAG
CCTGGCAGAGACATCGTTTCCTTGCCCATCGGGGGCCAAACTTTCATCTA
AAAACGGCGATCCTTTGTCGGACCAAGCGTTCAAAACGTCGTCGTATTGC
AGCTTTAATAACAGCTCACCGGAATTAGCCTTGGGAATTGGACTTTCTTC
TTTGGCAGGCAATTCCGAAACCTTGGATTCAGCTACTTGTTTTTCTTTTT
CGACTTTCTTTTTCCTCTTCGCCGAGGAACCCTTCCTGTTACTATTACCG
GTACCGCTACTGTTGTTGAATTTGGGAGAGATTTGAAGAACATCAATCGG
GAAATTCCACCAATTGCCTTCATCAACTTGTCTCAATGCTTTCATTCCAC
TTCTCATTCCGAATCCGAGTTCGAGTTTCCCGCCAAATCCAATCCCCATT
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