CX673496

Overview
NameCX673496
Unique NameCX673496
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX673496 vs. ExPASy Swiss-Prot
Match: XRI1_ARATH (Protein XRI1 OS=Arabidopsis thaliana GN=XRI1 PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 3.258e-48
Identity = 96/208 (46.15%), Postives = 127/208 (61.06%), Query Frame = 3 
Query:  159 SKSWNWQGEEFCLQKGSNF-DMSGSQFNEVILNEEDLSYMLDDETTPVKSCGDLAYQATHSGKMSKDPKEHRETYSQAKRRRMLQFDPQVLDSSLCCDEMPSAFQKSNEREDSVEEVLPGVSQWTTGLS-GLSASNCDGLDSF-EGWIAECLNDPEMTFTPDDMNFSEASDIQIDISEFCNSTNSLPTCNTNVVQQQVTRTPRNVVFK 773
            S SWNWQ + +  Q  S+F D+      EV LN+ED SYM DDE TPVK+C +L Y  T +   ++  + H ET S  KRRRMLQF+ Q  ++SL   E  SA  KS+ R+D+ +E+LP  SQ   G S   SAS+ +GLD + E W A+CLND E    PDD+NF  + D+Q+DISE+ N     P   T  VQ+ VTR+  NV+FK
Sbjct:    9 SSSWNWQVDNYNHQPQSHFSDVPDCTMTEVTLNQEDHSYMFDDENTPVKACSELGYHVT-TEDTNRKMEVHSETRSALKRRRMLQFEDQP-ETSLFSSESFSAILKSSARDDTFDELLPEGSQLIEGFSEDASASSFEGLDLYAEEWYADCLNDAETPMLPDDLNFG-SPDVQVDISEYLNVP---PETETREVQRPVTRSSPNVIFK 210

HSP 2 Score: 54.6842 bits (130), Expect = 3.258e-48
Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 2 
Query:  773 RKSLLRTPTKLASSVAYPFAFIKPCGIHGDVTLNDI 880
            RKS  R  +KL SS+ YPFAFIKPCG+HG +TL DI
Sbjct:  212 RKSFSRPVSKLPSSIIYPFAFIKPCGVHGGMTLKDI 247
The following BLAST results are available for this feature:
BLAST of CX673496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
XRI1_ARATH3.258e-4846.15Protein XRI1 OS=Arabidopsis thaliana GN=XRI1 PE=1 ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_23A08_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-23A08-A15-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX673496 ID=CX673496; Name=CX673496; organism=Citrus sinensis; type=EST; length=880bp
AGTCAGTGCTTGTGCTTCTCTCGTAGTGGGAAGACGAGGGAGAAACGGAA
AACAAAAGTTACAAATATATGAGAATGTCTGCAAATAGAATTGATAGTCA
CGGTGATGACAATATGGCGACGGATTATTCCGGCACATTAAGCTCAAATC
CGGGGGACAGCAAGTCTTGGAATTGGCAAGGAGAGGAATTTTGTCTCCAG
AAAGGTTCCAATTTTGATATGTCGGGATCCCAATTCAATGAAGTGATTCT
GAATGAGGAAGATCTTTCCTATATGCTCGATGATGAAACAACTCCTGTTA
AGTCCTGTGGGGATTTGGCATACCAGGCCACCCATAGCGGTAAAATGAGC
AAGGACCCAAAAGAACATAGGGAGACTTATTCACAAGCAAAGAGGCGTCG
GATGTTGCAATTTGATCCTCAAGTATTAGATTCTTCCCTCTGCTGTGATG
AGATGCCATCTGCATTCCAAAAATCAAATGAGAGGGAGGACTCAGTTGAA
GAAGTTTTACCTGGAGTGTCACAGTGGACTACTGGGTTATCAGGCTTGTC
TGCCTCCAATTGCGATGGCCTAGATTCATTTGAAGGGTGGATTGCTGAAT
GCCTTAATGATCCTGAGATGACTTTCACCCCTGATGACATGAACTTCTCT
GAGGCATCTGATATACAAATTGATATTTCAGAGTTCTGCAATTCAACGAA
TTCACTGCCCACATGTAATACTAATGTGGTTCAACAGCAGGTTACTAGAA
CTCCTCGAAATGTTGTTTTTAAAGAAAGTCTTTGTTAAGAACCCCGACTA
AATTAGCTTCTTCAGTTGCCTATCCATTTGCCTTTATTAAGCCATGTGGA
ATCCATGGAGATGTTACTTTGAATGACATA
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