CX673495

Overview
NameCX673495
Unique NameCX673495
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX673495 vs. ExPASy Swiss-Prot
Match: CNGC2_ARATH (Cyclic nucleotide-gated ion channel 2 OS=Arabidopsis thaliana GN=CNGC2 PE=1 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 1.009e-69
Identity = 148/226 (65.49%), Postives = 156/226 (69.03%), Query Frame = 2
Query:  158 MPSHPNFPFSLPRWIIELFRSKKVXXXXXXXXXXXXXXXXXXPISN--------HNFECYACTQVGVPVFHSTSCDQAHQPEWEASAGSSLVPIQARSKILGPKDGR--PASATFAHVFDPRSKRVQRLNRAFLLARGMSLAVDPLFFYALSIGRGGAP-CLYMDGALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYVRSLKGF 802
            MPSHPNF F   RWI  LF  K                      S+         + ECYACTQVGVP FHSTSCDQAH PEW ASAGSSLVPIQ  S +  P   R       F  V DPRSKRVQR NRA LLARGM+LAVDPLFFYALSIGR   P CLYMDGA AA+VTVLRTC+DAVHL+H+WLQFRLAYVSRESLVVGCGKLVWDPRAIASHY RSL GF
Sbjct:    1 MPSHPNFIF---RWI-GLFSDKFRRQTTGIDENSNLQINGGDSSSSGSDETPVLSSVECYACTQVGVPAFHSTSCDQAHAPEWRASAGSSLVPIQEGS-VPNPARTRFRRLKGPFGEVLDPRSKRVQRWNRALLLARGMALAVDPLFFYALSIGRTTGPACLYMDGAFAAVVTVLRTCLDAVHLWHVWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYARSLTGF 221          
BLAST of CX673495 vs. ExPASy Swiss-Prot
Match: CNG18_ARATH (Putative cyclic nucleotide-gated ion channel 18 OS=Arabidopsis thaliana GN=CNGC18 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.690e-16
Identity = 48/116 (41.38%), Postives = 68/116 (58.62%), Query Frame = 2
Query:  446 DGRPASATFAH-VFDPRSKRVQRLNRAFLLARGMSLAVDPLFFYALSIGRGGAPCLYMDGALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYVRS 790
            DG   S  + H + DP S  V   N  FL+   ++L +DP +FY   +G  G  CL +D +LAA VT  RT  D  HL H++++FR A+V+R S V G G+LV D R IA  Y+++
Sbjct:   28 DGSQFSVLWRHQILDPDSNIVTYWNHVFLITSILALFLDPFYFYVPYVG--GPACLSIDISLAATVTFFRTVADIFHLLHIFMKFRTAFVARSSRVFGRGELVMDSREIAMRYLKT 141          
BLAST of CX673495 vs. ExPASy Swiss-Prot
Match: CNG13_ARATH (Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.690e-16
Identity = 47/116 (40.52%), Postives = 70/116 (60.34%), Query Frame = 2
Query:  443 KDGRPASATFAHVFDPRSKRVQRLNRAFLLARGMSLAVDPLFFYALSIGRGGAPCLYMDGALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYVRS 790
            +D   ++ T  ++ +P+   +Q  N+ FL A  ++LA+DPLFFY + I  G   CL +   L    +VLRT +DA ++ H+  QFR AY+S  S V G G+LV DP+AIA  Y+ S
Sbjct:   56 RDSNSSTTTQKNIINPQGSFLQNWNKIFLFASVIALAIDPLFFY-IPIVDGERHCLNLHRNLEIAASVLRTFIDAFYIIHIVFQFRTAYISPSSRVFGRGELVDDPKAIAIKYLSS 170          
BLAST of CX673495 vs. ExPASy Swiss-Prot
Match: CNGC7_ARATH (Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.917e-16
Identity = 43/102 (42.16%), Postives = 63/102 (61.76%), Query Frame = 2
Query:  479 VFDPRSKRVQRLNRAFLLARGMSLAVDPLFFYALSIGRGGAPCLYMDGALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYV 784
            +FDP+ K +   NR F+++  ++++VDPLFFY   +   G+ C+ +D  LA   T LRT VD  +L  + LQFR AY++  S V G G+LV DP  IA  Y+
Sbjct:   90 IFDPQDKTLLVWNRLFVISCILAVSVDPLFFYLPIVDNSGSSCIGIDTKLAVTTTTLRTIVDVFYLTRMALQFRTAYIAPSSRVFGRGELVIDPAKIAERYL 191          
BLAST of CX673495 vs. ExPASy Swiss-Prot
Match: CNG14_ARATH (Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC14 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.917e-16
Identity = 56/160 (35.00%), Postives = 86/160 (53.75%), Query Frame = 2
Query:  332 VPVFHSTSCDQAHQPEWEASAGSSLVPIQARSKILGPKDGR----PASATFAH--VFDPRSKRVQRLNRAFLLARGMSLAVDPLFFYALSIGR-GGAPCLYMDGALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYVRS 790
            VP+F ST+     Q          ++P ++++++  P+ GR    P +       + DP    V + NR FL    ++L VDPLFF+  S+ R G + C+  D  L  ++T  RT  D  ++ H+ ++FR AYVSR S V G G+LV DP+ IA  Y+RS
Sbjct:   26 VPLFKSTTAPFMKQ---------EVLPKKSKTRLKIPRFGRFKVFPENFEIERDKILDPGGDAVLQWNRVFLFWCLVALYVDPLFFFLSSVKRIGRSSCMTTDLKLGIVITFFRTLADLFYVLHIVIKFRTAYVSRTSRVFGRGELVKDPKLIARRYLRS 176          
BLAST of CX673495 vs. ExPASy Swiss-Prot
Match: CNG10_ARATH (Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.187e-15
Identity = 45/117 (38.46%), Postives = 68/117 (58.12%), Query Frame = 2
Query:  440 PKDGRPASATFAHVFDPRSKRVQRLNRAFLLARGMSLAVDPLFFYALSIGRGGAPCLYMDGALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYVRS 790
            P     +S T  ++ +P+   +Q  N+ FL A  ++LA+DPLFFY + I      CL +D  L    ++LRT +DA ++ H+  QFR AY++  S V G G+LV D +AIA  Y+ S
Sbjct:   55 PDHKETSSVTRKNIINPQDSFLQNWNKIFLFACVVALAIDPLFFY-IPIVDSARHCLTLDSKLEIAASLLRTLIDAFYIIHIVFQFRTAYIAPSSRVFGRGELVDDAKAIALKYLSS 170          
BLAST of CX673495 vs. ExPASy Swiss-Prot
Match: CNGC6_ARATH (Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 4.162e-15
Identity = 44/103 (42.72%), Postives = 66/103 (64.08%), Query Frame = 2
Query:  479 VFDPRSKRVQRLNRAFLLARGMSLAVDPLFFYALSIGRGGAPCLYMDGALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYVR 787
            +FDP+ K +   N+ F+ +  ++++VDPLF Y L      A C+ +D  LA IVT +RT +D+ +LFH+ L+FR AYV+  S V G G+LV DP  IA  Y++
Sbjct:  103 IFDPQDKFLLLCNKLFVASCILAVSVDPLFLY-LPFINDKAKCVGIDRKLAIIVTTIRTVIDSFYLFHMALRFRTAYVAPSSRVFGRGELVIDPAQIAKRYLQ 204          
BLAST of CX673495 vs. ExPASy Swiss-Prot
Match: CNGC9_ARATH (Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.100e-15
Identity = 43/103 (41.75%), Postives = 65/103 (63.11%), Query Frame = 2
Query:  479 VFDPRSKRVQRLNRAFLLARGMSLAVDPLFFYALSIGRGGAPCLYMDGALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYVR 787
            +FDP+ K +   N+ F+ +  ++++VDPLF Y L   +    C+ +D  LA I T LRT +DA +LFH+ L+FR A+V+  S V G G+LV DP  IA  Y++
Sbjct:  103 IFDPQDKFLLLCNKLFVTSCILAVSVDPLFLY-LPFVKDNEKCIGIDRKLAIIATTLRTVIDAFYLFHMALRFRTAFVAPSSRVFGRGELVIDPAQIAKRYLQ 204          
BLAST of CX673495 vs. ExPASy Swiss-Prot
Match: CNGC8_ARATH (Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.582e-14
Identity = 43/102 (42.16%), Postives = 62/102 (60.78%), Query Frame = 2
Query:  479 VFDPRSKRVQRLNRAFLLARGMSLAVDPLFFYALSIGRGGAPCLYMDGALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYV 784
            +FDP+ K +   NR F+++  ++++VDPLFFY L I      C+ +D  LA   T LRT +D  +L  + LQFR AY++  S V G G+LV DP  IA  Y+
Sbjct:   97 IFDPQDKTLLLWNRMFVISCILAVSVDPLFFY-LPIVDNSKNCIGIDSKLAVTTTTLRTIIDVFYLTRMALQFRTAYIAPSSRVFGRGELVIDPAKIAERYL 197          
BLAST of CX673495 vs. ExPASy Swiss-Prot
Match: CNG20_ARATH (Probable cyclic nucleotide-gated ion channel 20, chloroplastic OS=Arabidopsis thaliana GN=CNGC20 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.339e-13
Identity = 37/103 (35.92%), Postives = 62/103 (60.19%), Query Frame = 2
Query:  479 VFDPRSKRVQRLNRAFLLARGMSLAVDPLFFYALSIGRGGAPCLYMDGALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYVR 787
            + +P +K VQ   + F L+  +++ +DPLFF+ + +      C+ +D  +      +R+  D +   ++ LQFRLAYV+RES VVG G+LV  P+ IA HY++
Sbjct:  192 IMNPHAKEVQTWTKFFALSCLLAIFIDPLFFFLIKVQEQNK-CIMIDWPMTKAFVAVRSVTDVIFTMNILLQFRLAYVARESTVVGAGQLVSHPKKIALHYLK 293          
The following BLAST results are available for this feature:
BLAST of CX673495 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
CNGC2_ARATH1.009e-6965.49Cyclic nucleotide-gated ion channel 2 OS=Arabidops... [more]
CNG18_ARATH1.690e-1641.38Putative cyclic nucleotide-gated ion channel 18 OS... [more]
CNG13_ARATH1.690e-1640.52Putative cyclic nucleotide-gated ion channel 13 OS... [more]
CNGC7_ARATH4.917e-1642.16Putative cyclic nucleotide-gated ion channel 7 OS=... [more]
CNG14_ARATH4.917e-1635.00Probable cyclic nucleotide-gated ion channel 14 OS... [more]
CNG10_ARATH3.187e-1538.46Probable cyclic nucleotide-gated ion channel 10 OS... [more]
CNGC6_ARATH4.162e-1542.72Probable cyclic nucleotide-gated ion channel 6 OS=... [more]
CNGC9_ARATH7.100e-1541.75Putative cyclic nucleotide-gated ion channel 9 OS=... [more]
CNGC8_ARATH1.582e-1442.16Putative cyclic nucleotide-gated ion channel 8 OS=... [more]
CNG20_ARATH1.339e-1335.92Probable cyclic nucleotide-gated ion channel 20, c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_23A07_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-23A07-B13-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX673495 ID=CX673495; Name=CX673495; organism=Citrus sinensis; type=EST; length=802bp
CCTAGGCCTCCCTAGCTCTCTTATAATATAATCCCTGCATCATACTGCTG
GTTGATTGATTGATTGAATTCAATTGGCCATTGTGCACCATCGTCGACCA
GTACCAGCACCAACACCAGCGCCTCCTTTCTCCTCCCATGGTTACTCCCT
CATCACCATGCCCTCTCACCCCAACTTCCCCTTCTCCCTGCCAAGGTGGA
TTATCGAACTGTTTCGAAGCAAGAAAGTTGATGGCGATCAAAATGGCGAA
AACAACAACGACGGCAACAGCGACGACAACAATCCAATATCAAACCACAA
CTTTGAATGCTATGCATGCACTCAAGTAGGGGTTCCGGTCTTTCACTCCA
CCAGCTGCGACCAAGCCCACCAGCCCGAATGGGAGGCCTCTGCCGGGTCC
TCCCTCGTCCCCATTCAGGCCCGTAGTAAGATCCTCGGCCCCAAGGACGG
CCGTCCTGCCTCAGCCACCTTCGCTCATGTGTTCGATCCTCGCAGCAAGC
GCGTGCAGAGACTCAACCGCGCGTTCCTCCTCGCACGTGGCATGTCTTTG
GCTGTGGACCCTTTGTTCTTCTATGCGCTGTCCATCGGCCGAGGCGGCGC
CCCGTGTTTGTACATGGACGGTGCCTTGGCGGCGATTGTAACCGTTCTTC
GCACGTGCGTTGACGCCGTCCATTTGTTTCACTTGTGGCTTCAGTTCAGG
CTGGCGTACGTCTCGAGGGAGTCGCTTGTTGTCGGATGCGGCAAGCTCGT
GTGGGACCCACGTGCCATCGCTTCTCATTACGTGCGGTCTCTCAAAGGAT
TT
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